Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14910

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,418,971	-		DDA3937_RS14900	0.79	-2.6
3,418,986	-		DDA3937_RS14900	0.80	-1.0
3,419,072	+		DDA3937_RS14900	0.87	+1.4
3,419,073	-		DDA3937_RS14900	0.87	-3.7
3,419,110	+				+1.0
3,419,110	+				+0.5
3,419,110	+				-0.6
3,419,111	-				-1.3
3,419,111	-				-1.7
3,419,111	-				+2.2
3,419,135	+				-1.3
3,419,135	+				+0.9
3,419,135	+				-2.7
3,419,136	-				+1.5
3,419,136	-				-0.9
3,419,144	+				-3.7
3,419,144	+				-0.8
3,419,145	-				-0.7
3,419,247	-				+1.8
3,419,249	-				+0.3
3,419,249	-				+0.8
3,419,249	-				-2.2
3,419,255	+				+2.2
3,419,256	-				-2.4
3,419,289	+				+0.7
3,419,290	-				-0.1
3,419,290	-				-3.2
3,419,356	+				-0.1
3,419,362	+				-1.5
3,419,364	+				-0.8
3,419,367	+				-1.0
3,419,368	-				+0.1
3,419,372	-				+0.2
3,419,397	-				+0.0
3,419,397	-				-2.2
3,419,461	+		DDA3937_RS14905	0.20	-2.1
3,419,488	-		DDA3937_RS14905	0.29	+1.3
3,419,491	-		DDA3937_RS14905	0.30	-1.5
3,419,515	+		DDA3937_RS14905	0.37	-1.5
3,419,572	-		DDA3937_RS14905	0.55	-1.6
3,419,592	+				-0.5
3,419,592	+		DDA3937_RS14905	0.62	-0.8
3,419,691	+				+0.4
3,419,692	-				+1.5
3,419,692	-				-1.1
3,419,712	+				-1.6
3,419,712	+				-0.1
3,419,712	+				-1.5
3,419,712	+				-1.5
3,419,713	-				+0.5
3,419,718	+				-2.2
3,419,718	+				+1.5
3,419,718	+				-2.5
3,419,718	+				-0.1
3,419,719	-				-2.9
3,419,719	-				+0.8
3,419,719	-				-1.3
3,419,735	+				-1.8
3,419,736	-				+0.5
3,419,737	+				-0.9
3,419,737	+				-1.8
3,419,738	-				+0.5
3,419,902	+				-2.9
3,419,903	-				+0.1
3,419,950	-				-2.2
3,419,965	+				-2.8
3,419,966	-				+1.2
3,419,966	-				-2.4
3,420,109	-		DDA3937_RS14910	0.14	-0.2
3,420,109	-				+0.5
3,420,178	-		DDA3937_RS14910	0.17	-0.8
3,420,279	-		DDA3937_RS14910	0.22	-2.0
3,420,288	+		DDA3937_RS14910	0.22	-3.1
3,420,288	+		DDA3937_RS14910	0.22	-1.3
3,420,289	-		DDA3937_RS14910	0.23	+1.9
3,420,369	+				+0.5
3,420,405	+		DDA3937_RS14910	0.28	-2.3
3,420,405	+		DDA3937_RS14910	0.28	-2.6
3,420,406	-		DDA3937_RS14910	0.28	-2.0
3,420,406	-		DDA3937_RS14910	0.28	-2.2
3,420,406	-		DDA3937_RS14910	0.28	-1.9
3,420,477	+		DDA3937_RS14910	0.32	-0.5
3,420,477	+		DDA3937_RS14910	0.32	-2.5
3,420,478	-		DDA3937_RS14910	0.32	-0.8
3,420,478	-		DDA3937_RS14910	0.32	-1.1
3,420,478	-		DDA3937_RS14910	0.32	-2.5
3,420,478	-		DDA3937_RS14910	0.32	-0.5
3,420,478	-		DDA3937_RS14910	0.32	-1.5
3,420,478	-		DDA3937_RS14910	0.32	-3.3
3,420,594	+		DDA3937_RS14910	0.37	-2.4
3,420,716	+		DDA3937_RS14910	0.43	-1.1
3,420,717	-		DDA3937_RS14910	0.43	-1.7
3,420,717	-		DDA3937_RS14910	0.43	-1.1
3,420,717	-		DDA3937_RS14910	0.43	-3.3
3,420,717	-		DDA3937_RS14910	0.43	-1.4
3,420,717	-		DDA3937_RS14910	0.43	-3.8
3,420,831	+		DDA3937_RS14910	0.49	-1.8
3,420,866	+		DDA3937_RS14910	0.51	-3.1
3,420,866	+		DDA3937_RS14910	0.51	-1.8
3,420,866	+		DDA3937_RS14910	0.51	-3.4
3,420,880	+		DDA3937_RS14910	0.51	-1.6
3,420,880	+		DDA3937_RS14910	0.51	-1.4
3,421,003	+		DDA3937_RS14910	0.57	-2.1
3,421,005	+		DDA3937_RS14910	0.57	-0.8
3,421,005	+		DDA3937_RS14910	0.57	-1.9
3,421,005	+		DDA3937_RS14910	0.57	-2.1
3,421,006	-		DDA3937_RS14910	0.57	-1.4
3,421,006	-		DDA3937_RS14910	0.57	+0.5
3,421,107	+		DDA3937_RS14910	0.62	-3.2
3,421,114	-		DDA3937_RS14910	0.63	-1.5
3,421,114	-		DDA3937_RS14910	0.63	+0.7
3,421,207	+		DDA3937_RS14910	0.67	-0.3
3,421,207	+		DDA3937_RS14910	0.67	-1.3
3,421,208	-		DDA3937_RS14910	0.67	-2.1
3,421,290	+		DDA3937_RS14910	0.71	-3.3
3,421,290	+		DDA3937_RS14910	0.71	-0.9
3,421,291	-		DDA3937_RS14910	0.71	-0.4
3,421,291	-		DDA3937_RS14910	0.71	-3.6
3,421,291	-		DDA3937_RS14910	0.71	-1.5
3,421,294	+		DDA3937_RS14910	0.71	-1.5
3,421,294	+		DDA3937_RS14910	0.71	-1.3
3,421,295	-		DDA3937_RS14910	0.71	-1.2
3,421,295	-		DDA3937_RS14910	0.71	-3.1
3,421,295	-		DDA3937_RS14910	0.71	-2.3
3,421,295	-		DDA3937_RS14910	0.71	-0.5
3,421,410	+		DDA3937_RS14910	0.77	-1.8
3,421,411	-		DDA3937_RS14910	0.77	-1.5
3,421,525	+		DDA3937_RS14910	0.83	-1.8
3,421,525	+		DDA3937_RS14910	0.83	-1.3
3,421,654	-		DDA3937_RS14910	0.89	-2.3
3,421,654	-		DDA3937_RS14910	0.89	-1.6
3,421,655	+		DDA3937_RS14910	0.89	-3.1
3,421,655	+		DDA3937_RS14910	0.89	+0.5
3,421,656	-		DDA3937_RS14910	0.89	-2.6
3,421,693	-				-1.1
3,421,732	+				-0.7
3,421,751	-				-2.4
3,421,823	-				-2.5
3,421,823	-				-0.1
3,421,825	-				-1.1
3,421,825	-				-1.6
3,421,825	-				-3.2
3,421,841	+				-1.3
3,421,871	-				-2.7
3,421,871	-				-1.8
3,421,871	-				-1.5
3,421,883	-				-1.1
3,421,883	-				-2.1
3,421,897	-				-1.6
3,421,897	-				+1.4
3,421,897	-				+1.0
3,421,916	+				-0.5
3,421,916	+				-2.5
3,421,917	-				-1.6
3,421,925	+				-2.8
3,421,970	+				-2.9
3,421,971	-				-0.5
3,422,016	+				-1.6
3,422,020	+				-0.5
3,422,020	+				+0.2
3,422,021	-				+0.6
3,422,024	+				-2.1
3,422,035	-				-0.3
3,422,063	+				-2.2
3,422,091	-				-1.1
3,422,094	+				-2.1
3,422,094	+				-1.8
3,422,095	-				-1.8
3,422,095	-				+0.7
3,422,114	+				+1.1
3,422,115	-				-1.8
3,422,115	-				-2.6
3,422,117	-				-0.8
3,422,117	-				-0.8
3,422,180	-		DDA3937_RS14915	0.13	+1.5
3,422,240	+		DDA3937_RS14915	0.18	-2.5
3,422,272	+		DDA3937_RS14915	0.21	+1.2
3,422,378	-		DDA3937_RS14915	0.30	-1.6
3,422,440	+		DDA3937_RS14915	0.35	-1.1
3,422,440	+				-0.8
3,422,441	-		DDA3937_RS14915	0.35	-0.8
3,422,441	-		DDA3937_RS14915	0.35	-0.5
3,422,441	-		DDA3937_RS14915	0.35	-0.5
3,422,551	-		DDA3937_RS14915	0.44	+3.6
3,422,752	+		DDA3937_RS14915	0.61	-2.5
3,422,752	+		DDA3937_RS14915	0.61	-1.5
3,422,752	+		DDA3937_RS14915	0.61	-1.0
3,422,753	-		DDA3937_RS14915	0.61	-1.9
3,422,783	-		DDA3937_RS14915	0.64	-1.5
3,422,783	-		DDA3937_RS14915	0.64	-1.5
3,422,787	+		DDA3937_RS14915	0.64	+0.4
3,422,787	+		DDA3937_RS14915	0.64	-0.1
3,422,788	-		DDA3937_RS14915	0.64	+1.5
3,422,788	-				+0.2