Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14405

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,301,281	+				-2.6
3,301,281	+				-0.5
3,301,282	-				-0.5
3,301,287	+				+0.4
3,301,303	+				-0.1
3,301,390	+				-2.9
3,301,390	+				+2.8
3,301,390	+				+0.5
3,301,390	+				-2.8
3,301,391	-				-2.5
3,301,391	-				-1.6
3,301,391	-				-0.1
3,301,391	-				-2.8
3,301,391	-				-0.4
3,301,391	-				-3.4
3,301,391	-				-0.8
3,301,391	-				-1.6
3,301,393	+				-1.2
3,301,394	-				+1.1
3,301,448	+		DDA3937_RS14400	0.11	-0.8
3,301,448	+		DDA3937_RS14400	0.11	-0.5
3,301,448	+		DDA3937_RS14400	0.11	-0.8
3,301,448	+		DDA3937_RS14400	0.11	+1.1
3,301,448	+		DDA3937_RS14400	0.11	-0.5
3,301,448	+		DDA3937_RS14400	0.11	+0.5
3,301,449	-		DDA3937_RS14400	0.11	+0.4
3,301,449	-				-0.1
3,301,449	-		DDA3937_RS14400	0.11	-1.1
3,301,449	-		DDA3937_RS14400	0.11	+0.8
3,301,453	+		DDA3937_RS14400	0.12	-3.3
3,301,469	+		DDA3937_RS14400	0.14	-1.2
3,301,469	+		DDA3937_RS14400	0.14	+0.3
3,301,469	+		DDA3937_RS14400	0.14	-0.1
3,301,469	+		DDA3937_RS14400	0.14	+2.9
3,301,469	+		DDA3937_RS14400	0.14	+0.5
3,301,469	+		DDA3937_RS14400	0.14	+3.7
3,301,469	+		DDA3937_RS14400	0.14	-3.5
3,301,470	-		DDA3937_RS14400	0.15	-0.6
3,301,470	-		DDA3937_RS14400	0.15	-2.6
3,301,470	-		DDA3937_RS14400	0.15	-0.3
3,301,473	+		DDA3937_RS14400	0.15	-2.3
3,301,473	+		DDA3937_RS14400	0.15	-3.1
3,301,473	+		DDA3937_RS14400	0.15	-1.1
3,301,474	-		DDA3937_RS14400	0.15	-1.2
3,301,474	-		DDA3937_RS14400	0.15	-1.5
3,301,474	-		DDA3937_RS14400	0.15	-1.9
3,301,474	-		DDA3937_RS14400	0.15	+0.2
3,301,474	-		DDA3937_RS14400	0.15	-1.3
3,301,474	-		DDA3937_RS14400	0.15	+2.0
3,301,474	-		DDA3937_RS14400	0.15	-3.2
3,301,610	-		DDA3937_RS14400	0.37	+0.7
3,301,634	+		DDA3937_RS14400	0.41	-1.9
3,301,634	+		DDA3937_RS14400	0.41	-2.9
3,301,635	-		DDA3937_RS14400	0.41	-1.1
3,301,635	-		DDA3937_RS14400	0.41	+0.3
3,301,635	-		DDA3937_RS14400	0.41	-0.6
3,301,635	-		DDA3937_RS14400	0.41	-0.5
3,301,649	+		DDA3937_RS14400	0.43	+0.5
3,301,649	+		DDA3937_RS14400	0.43	-1.8
3,301,738	+		DDA3937_RS14400	0.57	+0.2
3,301,739	-		DDA3937_RS14400	0.57	-1.8
3,301,798	+		DDA3937_RS14400	0.67	+0.2
3,301,798	+		DDA3937_RS14400	0.67	-0.1
3,301,798	+		DDA3937_RS14400	0.67	-1.1
3,301,808	+		DDA3937_RS14400	0.68	+1.0
3,301,808	+		DDA3937_RS14400	0.68	-0.1
3,301,809	-		DDA3937_RS14400	0.68	+1.5
3,301,809	-				+4.3
3,301,809	-		DDA3937_RS14400	0.68	-1.5
3,301,812	+		DDA3937_RS14400	0.69	-0.5
3,301,852	+		DDA3937_RS14400	0.75	-0.1
3,301,852	+		DDA3937_RS14400	0.75	-1.9
3,301,853	-		DDA3937_RS14400	0.75	-1.6
3,301,853	-		DDA3937_RS14400	0.75	+0.6
3,301,876	+		DDA3937_RS14400	0.79	-1.2
3,301,876	+		DDA3937_RS14400	0.79	+0.0
3,301,877	-		DDA3937_RS14400	0.79	+0.0
3,301,889	+		DDA3937_RS14400	0.81	-0.1
3,301,889	+		DDA3937_RS14400	0.81	-1.1
3,301,890	-		DDA3937_RS14400	0.81	+1.0
3,301,890	-		DDA3937_RS14400	0.81	-1.3
3,301,890	-		DDA3937_RS14400	0.81	+1.5
3,301,892	+		DDA3937_RS14400	0.82	-0.9
3,301,892	+		DDA3937_RS14400	0.82	+0.5
3,301,892	+		DDA3937_RS14400	0.82	+0.7
3,301,892	+		DDA3937_RS14400	0.82	-0.1
3,301,892	+		DDA3937_RS14400	0.82	-1.6
3,301,892	+		DDA3937_RS14400	0.82	-0.5
3,301,892	+		DDA3937_RS14400	0.82	+0.6
3,301,892	+		DDA3937_RS14400	0.82	+0.6
3,302,056	+				-2.9
3,302,056	+				+0.1
3,302,057	-				+0.2
3,302,057	-				-2.1
3,302,057	-				-2.1
3,302,075	-				+1.3
3,302,075	-				+0.8
3,302,075	-				-1.8
3,302,097	+				-0.9
3,302,098	-				-0.1
3,302,098	-				-1.7
3,302,098	-				-0.1
3,302,103	-				-0.2
3,302,158	-				-0.5
3,302,158	-				-2.1
3,302,158	-				-2.7
3,302,185	+				+0.5
3,302,185	+				-0.2
3,302,185	+				-2.9
3,302,186	-				+2.8
3,302,186	-				-0.7
3,302,186	-				-1.5
3,302,227	-				+0.6
3,302,252	+				-0.6
3,302,263	-				-2.3
3,302,263	-				-2.2
3,302,280	-				+1.0
3,302,280	-				-2.1
3,302,280	-				+1.5
3,302,287	+				-1.5
3,302,287	+				+1.8
3,302,288	-				-2.2
3,302,313	-				-0.1
3,302,359	+				-0.5
3,302,360	-				-3.3
3,302,365	+				-2.2
3,302,365	+				-1.1
3,302,365	+				+1.1
3,302,366	-				-1.6
3,302,366	-				-1.5
3,302,368	+				-0.3
3,302,368	+				-0.3
3,302,552	+		DDA3937_RS14405	0.30	+1.8
3,302,552	+		DDA3937_RS14405	0.30	-3.5
3,302,552	+		DDA3937_RS14405	0.30	-3.0
3,302,628	+		DDA3937_RS14405	0.38	+0.9
3,302,687	+		DDA3937_RS14405	0.45	+2.7
3,302,862	+		DDA3937_RS14405	0.64	-3.6
3,302,862	+		DDA3937_RS14405	0.64	+1.7
3,302,863	-		DDA3937_RS14405	0.64	+0.0
3,302,863	-		DDA3937_RS14405	0.64	-1.6
3,302,888	+		DDA3937_RS14405	0.67	+0.8
3,302,900	+		DDA3937_RS14405	0.68	-2.4
3,302,900	+		DDA3937_RS14405	0.68	+1.4
3,302,901	-		DDA3937_RS14405	0.68	+0.5
3,302,908	-		DDA3937_RS14405	0.69	-1.3
3,303,230	+				-2.1
3,303,231	+				+0.8
3,303,232	-				-1.2
3,303,232	-				-1.5
3,303,398	-		DDA3937_RS14410	0.22	+3.7
3,303,398	-		DDA3937_RS14410	0.22	+1.7
3,303,517	+		DDA3937_RS14410	0.37	-1.6
3,303,517	+		DDA3937_RS14410	0.37	-0.0
3,303,559	-		DDA3937_RS14410	0.43	+1.5
3,303,713	+		DDA3937_RS14410	0.62	-2.4
3,303,713	+		DDA3937_RS14410	0.62	-1.1
3,303,743	+		DDA3937_RS14410	0.66	-1.6
3,303,743	+				-0.8
3,303,743	+		DDA3937_RS14410	0.66	-1.3
3,303,743	+		DDA3937_RS14410	0.66	-1.5
3,303,743	+		DDA3937_RS14410	0.66	-2.2
3,303,743	+		DDA3937_RS14410	0.66	-1.1
3,303,744	-		DDA3937_RS14410	0.66	+0.4
3,303,744	-		DDA3937_RS14410	0.66	-1.6
3,303,744	-		DDA3937_RS14410	0.66	-2.2
3,303,744	-		DDA3937_RS14410	0.66	+1.0
3,303,744	-		DDA3937_RS14410	0.66	+1.3
3,303,761	+				+0.5
3,303,762	-		DDA3937_RS14410	0.69	-2.7
3,303,904	+		DDA3937_RS14410	0.87	-0.1
3,303,904	+		DDA3937_RS14410	0.87	-0.1
3,303,904	+		DDA3937_RS14410	0.87	+0.4
3,303,926	+				+0.6
3,303,968	-				-2.5
3,303,972	-				-0.1
3,303,972	-				-0.9
3,303,972	-				+1.6
3,303,991	+				-1.4
3,303,992	-				-2.2
3,303,994	+				-0.8
3,303,995	-				-1.8
3,303,995	-				-3.9
3,303,995	-				+0.0
3,304,028	-				+1.5
3,304,114	+		DDA3937_RS14415	0.12	+0.5
3,304,114	+		DDA3937_RS14415	0.12	+1.8
3,304,114	+		DDA3937_RS14415	0.12	-0.5
3,304,114	+		DDA3937_RS14415	0.12	-1.5
3,304,115	-		DDA3937_RS14415	0.12	-2.6
3,304,115	-		DDA3937_RS14415	0.12	-1.1
3,304,115	-		DDA3937_RS14415	0.12	-0.7
3,304,115	-		DDA3937_RS14415	0.12	-3.0
3,304,153	+		DDA3937_RS14415	0.18	-2.7
3,304,153	+		DDA3937_RS14415	0.18	+2.1
3,304,153	+		DDA3937_RS14415	0.18	-0.8
3,304,154	-		DDA3937_RS14415	0.18	-1.7
3,304,154	-		DDA3937_RS14415	0.18	-2.1