Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14035

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,204,245	+		DDA3937_RS14030	0.55	+1.0
3,204,245	+		DDA3937_RS14030	0.55	-2.5
3,204,245	+		DDA3937_RS14030	0.55	-0.0
3,204,246	-		DDA3937_RS14030	0.55	+1.8
3,204,246	-		DDA3937_RS14030	0.55	-3.3
3,204,302	+		DDA3937_RS14030	0.58	-3.0
3,204,302	+		DDA3937_RS14030	0.58	+0.5
3,204,302	+		DDA3937_RS14030	0.58	-0.8
3,204,303	-		DDA3937_RS14030	0.58	+0.5
3,204,480	+		DDA3937_RS14030	0.68	-2.9
3,204,555	-		DDA3937_RS14030	0.73	-1.3
3,204,715	+		DDA3937_RS14030	0.82	+0.9
3,204,780	+		DDA3937_RS14030	0.85	-2.8
3,204,794	+		DDA3937_RS14030	0.86	+1.8
3,204,795	-		DDA3937_RS14030	0.86	+4.1
3,204,795	-		DDA3937_RS14030	0.86	-1.5
3,204,797	+		DDA3937_RS14030	0.86	+1.3
3,204,798	-		DDA3937_RS14030	0.86	+2.8
3,204,798	-		DDA3937_RS14030	0.86	-1.2
3,204,798	-		DDA3937_RS14030	0.86	-1.6
3,204,798	-		DDA3937_RS14030	0.86	+1.4
3,204,837	+		DDA3937_RS14030	0.89	+0.4
3,205,031	+				+0.8
3,205,032	-				-2.4
3,205,211	-				+4.9
3,205,211	-				+0.2
3,205,211	-				+1.7
3,205,220	-				-0.0
3,205,240	+				+0.4
3,205,247	+				-0.3
3,205,249	+				+2.5
3,205,249	+				+0.3
3,205,250	-				+0.6
3,205,250	-				-1.8
3,205,250	-				-0.8
3,205,250	-				-2.3
3,205,250	-				+0.4
3,205,250	-				-2.4
3,205,250	-				+2.1
3,205,250	-				+1.1
3,205,257	+				+2.5
3,205,258	-				+1.0
3,205,258	-				+1.0
3,205,784	+		DDA3937_RS14035	0.34	+0.4
3,205,785	-		DDA3937_RS14035	0.34	+1.8
3,205,785	-		DDA3937_RS14035	0.34	+1.3
3,205,785	-		DDA3937_RS14035	0.34	-0.1
3,206,144	+		DDA3937_RS14035	0.56	-2.2
3,206,144	+		DDA3937_RS14035	0.56	-2.2
3,206,144	+		DDA3937_RS14035	0.56	-0.6
3,206,145	-		DDA3937_RS14035	0.57	+0.5
3,206,145	-		DDA3937_RS14035	0.57	+0.8
3,206,145	-		DDA3937_RS14035	0.57	+1.3
3,206,145	-		DDA3937_RS14035	0.57	-1.6
3,206,149	+		DDA3937_RS14035	0.57	-2.6
3,206,150	-		DDA3937_RS14035	0.57	+1.9
3,206,150	-		DDA3937_RS14035	0.57	-1.8
3,206,216	+		DDA3937_RS14035	0.61	-2.4
3,206,320	+		DDA3937_RS14035	0.67	-2.3
3,206,320	+		DDA3937_RS14035	0.67	+0.0
3,206,320	+		DDA3937_RS14035	0.67	-2.3
3,206,320	+		DDA3937_RS14035	0.67	-1.9
3,206,320	+		DDA3937_RS14035	0.67	+2.8
3,206,321	-		DDA3937_RS14035	0.68	-2.6
3,206,321	-		DDA3937_RS14035	0.68	-2.0
3,206,321	-		DDA3937_RS14035	0.68	+0.5
3,206,321	-		DDA3937_RS14035	0.68	-0.9
3,206,321	-		DDA3937_RS14035	0.68	-1.5
3,206,402	+		DDA3937_RS14035	0.73	+0.4
3,206,403	-		DDA3937_RS14035	0.73	-0.6
3,206,410	+		DDA3937_RS14035	0.73	-2.7
3,206,411	-		DDA3937_RS14035	0.73	+2.3
3,206,482	+		DDA3937_RS14035	0.78	-0.3
3,206,539	+		DDA3937_RS14035	0.81	-3.1
3,206,539	+		DDA3937_RS14035	0.81	-2.0
3,206,539	+		DDA3937_RS14035	0.81	+1.3
3,206,539	+		DDA3937_RS14035	0.81	-1.3
3,206,540	-		DDA3937_RS14035	0.81	+4.6
3,206,615	+		DDA3937_RS14035	0.86	-2.7
3,206,616	-		DDA3937_RS14035	0.86	-2.5
3,206,616	-		DDA3937_RS14035	0.86	+1.2
3,206,649	-		DDA3937_RS14035	0.88	-0.2
3,206,649	-		DDA3937_RS14035	0.88	+0.0
3,206,723	-				-1.9
3,206,723	-				-2.9
3,206,723	-				+0.3
3,206,723	-				-1.0
3,206,781	-				+0.8
3,206,820	+				+0.1
3,206,821	-				-0.0
3,206,878	+				+1.5
3,206,878	+				-1.3
3,206,878	+				+3.2
3,206,878	+				+1.5
3,206,878	+				-0.4
3,206,878	+				+1.3
3,206,878	+				-2.4
3,206,878	+				+0.3
3,206,878	+				+2.5
3,206,879	-				-2.6
3,206,879	-				+0.1
3,206,898	+				+2.0
3,206,898	+				+1.4
3,206,899	-				-0.5
3,206,899	-				-1.3
3,206,899	-				+1.4
3,206,935	-				-1.3
3,206,950	-				-2.6
3,207,069	+				+0.5
3,207,069	+				-1.6
3,207,070	-				-0.9
3,207,070	-				-2.6
3,207,077	+				-2.1
3,207,125	-				-1.3
3,207,150	-				+0.1
3,207,179	+				+2.6
3,207,262	-				+0.6
3,207,459	-				-0.1
3,207,468	+		DDA3937_RS14040	0.25	+1.1
3,207,468	+		DDA3937_RS14040	0.25	+1.7
3,207,468	+		DDA3937_RS14040	0.25	+0.2
3,207,468	+		DDA3937_RS14040	0.25	+0.1
3,207,468	+				+2.5
3,207,468	+		DDA3937_RS14040	0.25	+1.7
3,207,468	+		DDA3937_RS14040	0.25	-0.8
3,207,468	+		DDA3937_RS14040	0.25	-1.4
3,207,469	-		DDA3937_RS14040	0.25	-0.3
3,207,469	-		DDA3937_RS14040	0.25	-1.6
3,207,469	-		DDA3937_RS14040	0.25	+1.0
3,207,511	+		DDA3937_RS14040	0.29	+1.8
3,207,512	-		DDA3937_RS14040	0.29	+0.3
3,207,559	+		DDA3937_RS14040	0.34	+0.9
3,207,560	-		DDA3937_RS14040	0.34	-0.8
3,207,560	-		DDA3937_RS14040	0.34	-3.1
3,207,588	+		DDA3937_RS14040	0.36	-0.2
3,207,589	-		DDA3937_RS14040	0.37	-0.1
3,207,592	+		DDA3937_RS14040	0.37	-1.9
3,207,619	+		DDA3937_RS14040	0.40	-0.8
3,207,619	+		DDA3937_RS14040	0.40	+1.5
3,207,620	-		DDA3937_RS14040	0.40	-0.5
3,207,724	+		DDA3937_RS14040	0.50	+1.9
3,207,724	+		DDA3937_RS14040	0.50	-0.5
3,207,724	+				-0.1
3,207,724	+		DDA3937_RS14040	0.50	-1.6
3,207,724	+		DDA3937_RS14040	0.50	-2.2
3,207,724	+		DDA3937_RS14040	0.50	-1.9
3,207,725	-		DDA3937_RS14040	0.50	+0.0
3,207,725	-		DDA3937_RS14040	0.50	+0.5
3,207,725	-		DDA3937_RS14040	0.50	-0.3
3,207,729	+		DDA3937_RS14040	0.50	+1.1
3,207,729	+		DDA3937_RS14040	0.50	+0.5
3,207,729	+		DDA3937_RS14040	0.50	-1.2
3,207,730	-		DDA3937_RS14040	0.50	-0.9
3,207,730	-		DDA3937_RS14040	0.50	-1.7
3,207,730	-		DDA3937_RS14040	0.50	+0.0
3,207,730	-		DDA3937_RS14040	0.50	-1.5
3,207,730	-		DDA3937_RS14040	0.50	+0.7
3,207,830	-		DDA3937_RS14040	0.60	+1.5