Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14030

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS14025 and DDA3937_RS14030 are separated by 304 nucleotidesDDA3937_RS14030 and DDA3937_RS14035 are separated by 202 nucleotides DDA3937_RS14025: DDA3937_RS14025 - glycosyltransferase, at 3,201,721 to 3,202,968 _RS14025 DDA3937_RS14030: DDA3937_RS14030 - gamma-glutamyltransferase, at 3,203,273 to 3,205,036 _RS14030 DDA3937_RS14035: DDA3937_RS14035 - methyl-accepting chemotaxis protein, at 3,205,239 to 3,206,840 _RS14035 Position (kb) 3203 3204 3205 3206Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3202.331 kb on + strand, within DDA3937_RS14025at 3202.332 kb on - strand, within DDA3937_RS14025at 3202.332 kb on - strand, within DDA3937_RS14025at 3202.332 kb on - strand, within DDA3937_RS14025at 3202.473 kb on - strand, within DDA3937_RS14025at 3202.623 kb on + strand, within DDA3937_RS14025at 3202.623 kb on + strand, within DDA3937_RS14025at 3202.623 kb on + strand, within DDA3937_RS14025at 3202.624 kb on - strand, within DDA3937_RS14025at 3202.624 kb on - strand, within DDA3937_RS14025at 3202.624 kb on - strand, within DDA3937_RS14025at 3202.624 kb on - strand, within DDA3937_RS14025at 3202.626 kb on + strand, within DDA3937_RS14025at 3202.627 kb on - strand, within DDA3937_RS14025at 3202.627 kb on - strand, within DDA3937_RS14025at 3202.639 kb on + strand, within DDA3937_RS14025at 3202.825 kb on - strand, within DDA3937_RS14025at 3202.825 kb on - strand, within DDA3937_RS14025at 3202.875 kb on + strandat 3202.876 kb on - strandat 3202.942 kb on + strandat 3202.942 kb on + strandat 3202.978 kb on + strandat 3202.978 kb on + strandat 3202.978 kb on + strandat 3202.979 kb on - strandat 3202.979 kb on - strandat 3202.979 kb on - strandat 3202.979 kb on - strandat 3202.979 kb on - strandat 3202.979 kb on - strandat 3202.979 kb on - strandat 3202.979 kb on - strandat 3202.979 kb on - strandat 3203.072 kb on - strandat 3203.072 kb on - strandat 3203.074 kb on - strandat 3203.074 kb on - strandat 3203.102 kb on + strandat 3203.102 kb on + strandat 3203.102 kb on + strandat 3203.103 kb on - strandat 3203.103 kb on - strandat 3203.103 kb on - strandat 3203.103 kb on - strandat 3203.160 kb on + strandat 3203.161 kb on - strandat 3203.192 kb on + strandat 3203.205 kb on + strandat 3203.206 kb on - strandat 3203.272 kb on + strandat 3203.272 kb on + strandat 3203.272 kb on + strandat 3203.272 kb on + strandat 3203.273 kb on - strandat 3203.273 kb on - strandat 3203.273 kb on - strandat 3203.273 kb on - strandat 3203.301 kb on + strandat 3203.374 kb on + strandat 3203.375 kb on - strandat 3203.419 kb on + strandat 3203.551 kb on + strand, within DDA3937_RS14030at 3203.551 kb on + strand, within DDA3937_RS14030at 3203.551 kb on + strand, within DDA3937_RS14030at 3203.551 kb on + strand, within DDA3937_RS14030at 3203.551 kb on + strand, within DDA3937_RS14030at 3203.552 kb on - strand, within DDA3937_RS14030at 3203.552 kb on - strand, within DDA3937_RS14030at 3203.552 kb on - strand, within DDA3937_RS14030at 3203.599 kb on + strand, within DDA3937_RS14030at 3203.599 kb on + strand, within DDA3937_RS14030at 3203.599 kb on + strand, within DDA3937_RS14030at 3203.599 kb on + strand, within DDA3937_RS14030at 3203.599 kb on + strand, within DDA3937_RS14030at 3203.600 kb on - strand, within DDA3937_RS14030at 3203.600 kb on - strand, within DDA3937_RS14030at 3203.600 kb on - strand, within DDA3937_RS14030at 3203.600 kb on - strand, within DDA3937_RS14030at 3203.600 kb on - strand, within DDA3937_RS14030at 3203.603 kb on + strand, within DDA3937_RS14030at 3203.603 kb on + strand, within DDA3937_RS14030at 3203.603 kb on + strand, within DDA3937_RS14030at 3203.603 kb on + strand, within DDA3937_RS14030at 3203.604 kb on - strand, within DDA3937_RS14030at 3203.604 kb on - strand, within DDA3937_RS14030at 3203.604 kb on - strand, within DDA3937_RS14030at 3203.604 kb on - strand, within DDA3937_RS14030at 3203.604 kb on - strand, within DDA3937_RS14030at 3203.604 kb on - strand, within DDA3937_RS14030at 3203.620 kb on + strand, within DDA3937_RS14030at 3203.620 kb on + strand, within DDA3937_RS14030at 3203.621 kb on - strand, within DDA3937_RS14030at 3203.621 kb on - strand, within DDA3937_RS14030at 3203.645 kb on + strand, within DDA3937_RS14030at 3203.646 kb on - strand, within DDA3937_RS14030at 3203.651 kb on + strand, within DDA3937_RS14030at 3203.708 kb on + strand, within DDA3937_RS14030at 3203.709 kb on - strand, within DDA3937_RS14030at 3203.709 kb on - strand, within DDA3937_RS14030at 3203.746 kb on + strand, within DDA3937_RS14030at 3203.746 kb on + strand, within DDA3937_RS14030at 3203.748 kb on + strand, within DDA3937_RS14030at 3203.748 kb on + strand, within DDA3937_RS14030at 3203.748 kb on + strand, within DDA3937_RS14030at 3203.749 kb on - strand, within DDA3937_RS14030at 3203.749 kb on - strand, within DDA3937_RS14030at 3203.749 kb on - strand, within DDA3937_RS14030at 3203.749 kb on - strand, within DDA3937_RS14030at 3203.749 kb on - strand, within DDA3937_RS14030at 3203.771 kb on - strand, within DDA3937_RS14030at 3203.845 kb on + strand, within DDA3937_RS14030at 3203.845 kb on + strand, within DDA3937_RS14030at 3203.845 kb on + strand, within DDA3937_RS14030at 3203.846 kb on - strand, within DDA3937_RS14030at 3203.846 kb on - strand, within DDA3937_RS14030at 3203.846 kb on - strand, within DDA3937_RS14030at 3203.914 kb on + strand, within DDA3937_RS14030at 3203.915 kb on - strand, within DDA3937_RS14030at 3203.919 kb on + strand, within DDA3937_RS14030at 3204.072 kb on - strand, within DDA3937_RS14030at 3204.155 kb on + strand, within DDA3937_RS14030at 3204.178 kb on + strand, within DDA3937_RS14030at 3204.202 kb on + strand, within DDA3937_RS14030at 3204.227 kb on + strand, within DDA3937_RS14030at 3204.227 kb on + strand, within DDA3937_RS14030at 3204.227 kb on + strand, within DDA3937_RS14030at 3204.228 kb on - strand, within DDA3937_RS14030at 3204.228 kb on - strand, within DDA3937_RS14030at 3204.245 kb on + strand, within DDA3937_RS14030at 3204.245 kb on + strand, within DDA3937_RS14030at 3204.245 kb on + strand, within DDA3937_RS14030at 3204.246 kb on - strand, within DDA3937_RS14030at 3204.246 kb on - strand, within DDA3937_RS14030at 3204.302 kb on + strand, within DDA3937_RS14030at 3204.302 kb on + strand, within DDA3937_RS14030at 3204.302 kb on + strand, within DDA3937_RS14030at 3204.303 kb on - strand, within DDA3937_RS14030at 3204.480 kb on + strand, within DDA3937_RS14030at 3204.555 kb on - strand, within DDA3937_RS14030at 3204.715 kb on + strand, within DDA3937_RS14030at 3204.780 kb on + strand, within DDA3937_RS14030at 3204.794 kb on + strand, within DDA3937_RS14030at 3204.795 kb on - strand, within DDA3937_RS14030at 3204.795 kb on - strand, within DDA3937_RS14030at 3204.797 kb on + strand, within DDA3937_RS14030at 3204.798 kb on - strand, within DDA3937_RS14030at 3204.798 kb on - strand, within DDA3937_RS14030at 3204.798 kb on - strand, within DDA3937_RS14030at 3204.798 kb on - strand, within DDA3937_RS14030at 3204.837 kb on + strand, within DDA3937_RS14030at 3205.031 kb on + strandat 3205.032 kb on - strandat 3205.211 kb on - strandat 3205.211 kb on - strandat 3205.211 kb on - strandat 3205.220 kb on - strandat 3205.240 kb on + strandat 3205.247 kb on + strandat 3205.249 kb on + strandat 3205.249 kb on + strandat 3205.250 kb on - strandat 3205.250 kb on - strandat 3205.250 kb on - strandat 3205.250 kb on - strandat 3205.250 kb on - strandat 3205.250 kb on - strandat 3205.250 kb on - strandat 3205.250 kb on - strandat 3205.257 kb on + strandat 3205.258 kb on - strandat 3205.258 kb on - strandat 3205.784 kb on + strand, within DDA3937_RS14035at 3205.785 kb on - strand, within DDA3937_RS14035at 3205.785 kb on - strand, within DDA3937_RS14035at 3205.785 kb on - strand, within DDA3937_RS14035

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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3,202,331 + DDA3937_RS14025 0.49 -0.1
3,202,332 - DDA3937_RS14025 0.49 -1.5
3,202,332 - DDA3937_RS14025 0.49 -1.6
3,202,332 - DDA3937_RS14025 0.49 +0.1
3,202,473 - DDA3937_RS14025 0.60 +0.7
3,202,623 + DDA3937_RS14025 0.72 +0.9
3,202,623 + DDA3937_RS14025 0.72 +0.4
3,202,623 + DDA3937_RS14025 0.72 -1.3
3,202,624 - DDA3937_RS14025 0.72 -0.0
3,202,624 - DDA3937_RS14025 0.72 -0.0
3,202,624 - DDA3937_RS14025 0.72 +0.7
3,202,624 - DDA3937_RS14025 0.72 -1.0
3,202,626 + DDA3937_RS14025 0.73 -1.3
3,202,627 - DDA3937_RS14025 0.73 +1.0
3,202,627 - DDA3937_RS14025 0.73 -0.4
3,202,639 + DDA3937_RS14025 0.74 -0.0
3,202,825 - DDA3937_RS14025 0.88 -2.6
3,202,825 - DDA3937_RS14025 0.88 +1.7
3,202,875 + -0.8
3,202,876 - +0.5
3,202,942 + +0.6
3,202,942 + +1.5
3,202,978 + -0.8
3,202,978 + -2.3
3,202,978 + -2.9
3,202,979 - -0.1
3,202,979 - +0.6
3,202,979 - -0.2
3,202,979 - -0.0
3,202,979 - +3.0
3,202,979 - -0.5
3,202,979 - -2.7
3,202,979 - -1.8
3,202,979 - -0.8
3,203,072 - +1.2
3,203,072 - +0.4
3,203,074 - -0.8
3,203,074 - -0.3
3,203,102 + -3.5
3,203,102 + -0.6
3,203,102 + +1.0
3,203,103 - -0.0
3,203,103 - +2.6
3,203,103 - -1.6
3,203,103 - -1.3
3,203,160 + -1.8
3,203,161 - -0.8
3,203,192 + +0.7
3,203,205 + -1.3
3,203,206 - -1.3
3,203,272 + +1.6
3,203,272 + -0.0
3,203,272 + +1.3
3,203,272 + -1.8
3,203,273 - +1.2
3,203,273 - -0.7
3,203,273 - -1.3
3,203,273 - +1.2
3,203,301 + -1.3
3,203,374 + -1.2
3,203,375 - -1.5
3,203,419 + -3.1
3,203,551 + DDA3937_RS14030 0.16 -1.5
3,203,551 + DDA3937_RS14030 0.16 -0.2
3,203,551 + DDA3937_RS14030 0.16 -1.0
3,203,551 + DDA3937_RS14030 0.16 -2.5
3,203,551 + DDA3937_RS14030 0.16 -2.2
3,203,552 - DDA3937_RS14030 0.16 +0.5
3,203,552 - DDA3937_RS14030 0.16 +0.8
3,203,552 - DDA3937_RS14030 0.16 -1.0
3,203,599 + DDA3937_RS14030 0.18 -0.0
3,203,599 + DDA3937_RS14030 0.18 +1.5
3,203,599 + DDA3937_RS14030 0.18 +0.5
3,203,599 + DDA3937_RS14030 0.18 -0.0
3,203,599 + DDA3937_RS14030 0.18 -1.0
3,203,600 - DDA3937_RS14030 0.19 -0.5
3,203,600 - DDA3937_RS14030 0.19 +0.6
3,203,600 - DDA3937_RS14030 0.19 +1.1
3,203,600 - DDA3937_RS14030 0.19 -2.3
3,203,600 - DDA3937_RS14030 0.19 -1.0
3,203,603 + DDA3937_RS14030 0.19 +0.3
3,203,603 + DDA3937_RS14030 0.19 +1.6
3,203,603 + DDA3937_RS14030 0.19 +0.2
3,203,603 + DDA3937_RS14030 0.19 +1.0
3,203,604 - DDA3937_RS14030 0.19 -2.7
3,203,604 - DDA3937_RS14030 0.19 -0.2
3,203,604 - DDA3937_RS14030 0.19 +1.4
3,203,604 - DDA3937_RS14030 0.19 +2.3
3,203,604 - DDA3937_RS14030 0.19 -2.3
3,203,604 - DDA3937_RS14030 0.19 +3.4
3,203,620 + DDA3937_RS14030 0.20 +0.5
3,203,620 + DDA3937_RS14030 0.20 -0.8
3,203,621 - DDA3937_RS14030 0.20 +0.2
3,203,621 - DDA3937_RS14030 0.20 +0.4
3,203,645 + DDA3937_RS14030 0.21 -0.2
3,203,646 - DDA3937_RS14030 0.21 -1.3
3,203,651 + DDA3937_RS14030 0.21 -0.2
3,203,708 + DDA3937_RS14030 0.25 +0.8
3,203,709 - DDA3937_RS14030 0.25 -0.4
3,203,709 - DDA3937_RS14030 0.25 -1.8
3,203,746 + DDA3937_RS14030 0.27 -0.4
3,203,746 + DDA3937_RS14030 0.27 +2.5
3,203,748 + DDA3937_RS14030 0.27 -0.1
3,203,748 + DDA3937_RS14030 0.27 -2.9
3,203,748 + DDA3937_RS14030 0.27 +1.6
3,203,749 - DDA3937_RS14030 0.27 +1.0
3,203,749 - DDA3937_RS14030 0.27 +0.5
3,203,749 - DDA3937_RS14030 0.27 +0.6
3,203,749 - DDA3937_RS14030 0.27 -2.4
3,203,749 - DDA3937_RS14030 0.27 -0.1
3,203,771 - DDA3937_RS14030 0.28 +1.0
3,203,845 + DDA3937_RS14030 0.32 -1.0
3,203,845 + DDA3937_RS14030 0.32 -1.8
3,203,845 + DDA3937_RS14030 0.32 -0.6
3,203,846 - DDA3937_RS14030 0.32 -1.2
3,203,846 - DDA3937_RS14030 0.32 -0.3
3,203,846 - DDA3937_RS14030 0.32 -0.1
3,203,914 + DDA3937_RS14030 0.36 -1.6
3,203,915 - DDA3937_RS14030 0.36 -2.5
3,203,919 + DDA3937_RS14030 0.37 +2.4
3,204,072 - DDA3937_RS14030 0.45 -0.5
3,204,155 + DDA3937_RS14030 0.50 -2.8
3,204,178 + DDA3937_RS14030 0.51 +1.0
3,204,202 + DDA3937_RS14030 0.53 +2.2
3,204,227 + DDA3937_RS14030 0.54 +1.7
3,204,227 + DDA3937_RS14030 0.54 +0.6
3,204,227 + DDA3937_RS14030 0.54 -1.3
3,204,228 - DDA3937_RS14030 0.54 +1.1
3,204,228 - DDA3937_RS14030 0.54 -1.6
3,204,245 + DDA3937_RS14030 0.55 +1.0
3,204,245 + DDA3937_RS14030 0.55 -2.5
3,204,245 + DDA3937_RS14030 0.55 -0.0
3,204,246 - DDA3937_RS14030 0.55 +1.8
3,204,246 - DDA3937_RS14030 0.55 -3.3
3,204,302 + DDA3937_RS14030 0.58 -3.0
3,204,302 + DDA3937_RS14030 0.58 +0.5
3,204,302 + DDA3937_RS14030 0.58 -0.8
3,204,303 - DDA3937_RS14030 0.58 +0.5
3,204,480 + DDA3937_RS14030 0.68 -2.9
3,204,555 - DDA3937_RS14030 0.73 -1.3
3,204,715 + DDA3937_RS14030 0.82 +0.9
3,204,780 + DDA3937_RS14030 0.85 -2.8
3,204,794 + DDA3937_RS14030 0.86 +1.8
3,204,795 - DDA3937_RS14030 0.86 +4.1
3,204,795 - DDA3937_RS14030 0.86 -1.5
3,204,797 + DDA3937_RS14030 0.86 +1.3
3,204,798 - DDA3937_RS14030 0.86 +2.8
3,204,798 - DDA3937_RS14030 0.86 -1.2
3,204,798 - DDA3937_RS14030 0.86 -1.6
3,204,798 - DDA3937_RS14030 0.86 +1.4
3,204,837 + DDA3937_RS14030 0.89 +0.4
3,205,031 + +0.8
3,205,032 - -2.4
3,205,211 - +4.9
3,205,211 - +0.2
3,205,211 - +1.7
3,205,220 - -0.0
3,205,240 + +0.4
3,205,247 + -0.3
3,205,249 + +2.5
3,205,249 + +0.3
3,205,250 - +0.6
3,205,250 - -1.8
3,205,250 - -0.8
3,205,250 - -2.3
3,205,250 - +0.4
3,205,250 - -2.4
3,205,250 - +2.1
3,205,250 - +1.1
3,205,257 + +2.5
3,205,258 - +1.0
3,205,258 - +1.0
3,205,784 + DDA3937_RS14035 0.34 +0.4
3,205,785 - DDA3937_RS14035 0.34 +1.8
3,205,785 - DDA3937_RS14035 0.34 +1.3
3,205,785 - DDA3937_RS14035 0.34 -0.1

Or see this region's nucleotide sequence