Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13820

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,142,774	+				+1.4
3,142,774	+				+0.8
3,142,807	+				-1.3
3,142,815	-				-0.6
3,142,827	+				+0.5
3,142,827	+				-1.9
3,142,827	+				+2.0
3,142,907	-				+0.9
3,143,007	+		DDA3937_RS13810	0.38	-1.6
3,143,008	-		DDA3937_RS13810	0.39	+1.6
3,143,008	-		DDA3937_RS13810	0.39	-2.3
3,143,008	-		DDA3937_RS13810	0.39	-3.1
3,143,016	+		DDA3937_RS13810	0.43	-2.8
3,143,016	+		DDA3937_RS13810	0.43	+1.5
3,143,016	+		DDA3937_RS13810	0.43	-0.8
3,143,017	-		DDA3937_RS13810	0.44	-1.4
3,143,017	-		DDA3937_RS13810	0.44	-0.3
3,143,017	-		DDA3937_RS13810	0.44	+2.2
3,143,017	-		DDA3937_RS13810	0.44	+3.8
3,143,104	+		DDA3937_RS13810	0.88	-1.8
3,143,142	+				-2.0
3,143,203	-		DDA3937_RS13815	0.10	-3.0
3,143,226	-		DDA3937_RS13815	0.14	-1.3
3,143,226	-		DDA3937_RS13815	0.14	+1.4
3,143,283	+				+0.2
3,143,339	+		DDA3937_RS13815	0.34	+1.0
3,143,339	+		DDA3937_RS13815	0.34	+0.5
3,143,340	-		DDA3937_RS13815	0.34	-3.0
3,143,357	+		DDA3937_RS13815	0.37	+1.2
3,143,448	+		DDA3937_RS13815	0.52	-2.7
3,143,449	-		DDA3937_RS13815	0.52	-2.3
3,143,500	+		DDA3937_RS13815	0.61	+1.9
3,143,673	+				+0.3
3,143,673	+				-1.9
3,143,674	-				-2.3
3,143,674	-				-0.8
3,143,674	-				-1.6
3,143,676	-				-3.9
3,143,749	+		DDA3937_RS13820	0.15	+3.0
3,143,792	-		DDA3937_RS13820	0.36	-2.3
3,143,814	+		DDA3937_RS13820	0.46	-1.9
3,143,815	-		DDA3937_RS13820	0.47	+0.9
3,143,815	-		DDA3937_RS13820	0.47	-1.9
3,143,815	-		DDA3937_RS13820	0.47	+1.5
3,143,815	-		DDA3937_RS13820	0.47	-0.8
3,143,819	+		DDA3937_RS13820	0.49	+3.0
3,143,819	+		DDA3937_RS13820	0.49	+0.8
3,143,902	+		DDA3937_RS13820	0.88	-3.5
3,143,903	-		DDA3937_RS13820	0.89	-0.4
3,143,903	-		DDA3937_RS13820	0.89	-2.3
3,143,927	+				+2.6
3,143,931	-				+2.6
3,143,937	-				+0.0
3,143,937	-				-3.3
3,143,938	+				-3.1
3,143,939	-				-1.3
3,143,950	+				-1.3
3,143,987	+				+1.2
3,143,996	+				-0.4
3,144,026	+				-2.3
3,144,027	-				+1.3
3,144,035	-				-2.4
3,144,037	+				+2.2
3,144,044	+				+2.1
3,144,074	-				+2.1
3,144,109	-				-0.1
3,144,109	-				+1.5
3,144,109	-				-1.7
3,144,114	+				-1.8
3,144,114	+				-1.8
3,144,115	-				-1.6
3,144,136	+				-3.3
3,144,173	+				+1.6
3,144,173	+				-0.8
3,144,174	-				-1.8
3,144,174	-				-0.4
3,144,174	-				-1.1
3,144,174	-				-1.8
3,144,198	+				-2.0
3,144,252	+				+1.6
3,144,252	+				-0.4
3,144,253	-				-1.5
3,144,253	-				+0.1
3,144,253	-				-1.3
3,144,320	+				-3.0
3,144,320	+				+0.2
3,144,320	+				-0.7
3,144,320	+				-1.0
3,144,321	-				-1.4
3,144,324	-				-1.0
3,144,324	-				-0.0
3,144,324	-				+0.3
3,144,324	-				-2.4
3,144,324	-				-3.3
3,144,373	-		DDA3937_RS13825	0.12	+0.7
3,144,448	-		DDA3937_RS13825	0.16	+2.1
3,144,479	+		DDA3937_RS13825	0.18	+1.0
3,144,479	+		DDA3937_RS13825	0.18	-0.6
3,144,480	-		DDA3937_RS13825	0.18	-1.0
3,144,480	-		DDA3937_RS13825	0.18	-0.0
3,144,480	-		DDA3937_RS13825	0.18	-1.3
3,144,480	-		DDA3937_RS13825	0.18	+1.2
3,144,480	-		DDA3937_RS13825	0.18	-3.5
3,144,480	-		DDA3937_RS13825	0.18	+1.0
3,144,516	-		DDA3937_RS13825	0.20	+1.5
3,144,541	-		DDA3937_RS13825	0.21	+3.6
3,144,541	-		DDA3937_RS13825	0.21	-0.8
3,144,575	-		DDA3937_RS13825	0.23	-1.3
3,144,590	+		DDA3937_RS13825	0.24	+1.4
3,144,600	+		DDA3937_RS13825	0.24	-2.4
3,144,600	+		DDA3937_RS13825	0.24	+1.4
3,144,600	+				-0.4
3,144,600	+		DDA3937_RS13825	0.24	-2.1
3,144,600	+		DDA3937_RS13825	0.24	-1.6
3,144,600	+		DDA3937_RS13825	0.24	-1.4
3,144,600	+		DDA3937_RS13825	0.24	+0.1
3,144,601	-		DDA3937_RS13825	0.24	-0.8
3,144,601	-		DDA3937_RS13825	0.24	-1.5
3,144,601	-		DDA3937_RS13825	0.24	-1.9
3,144,601	-		DDA3937_RS13825	0.24	-1.0
3,144,601	-		DDA3937_RS13825	0.24	+1.8
3,144,601	-		DDA3937_RS13825	0.24	-2.5
3,144,608	+		DDA3937_RS13825	0.25	+0.3
3,144,608	+		DDA3937_RS13825	0.25	-1.6
3,144,608	+		DDA3937_RS13825	0.25	-1.9
3,144,608	+		DDA3937_RS13825	0.25	+1.4
3,144,608	+		DDA3937_RS13825	0.25	-2.0
3,144,608	+		DDA3937_RS13825	0.25	-3.3
3,144,608	+		DDA3937_RS13825	0.25	-1.6
3,144,608	+		DDA3937_RS13825	0.25	+1.0
3,144,608	+		DDA3937_RS13825	0.25	-0.0
3,144,608	+		DDA3937_RS13825	0.25	-0.4
3,144,608	+		DDA3937_RS13825	0.25	+1.1
3,144,609	-		DDA3937_RS13825	0.25	-2.1
3,144,609	-		DDA3937_RS13825	0.25	-1.3
3,144,609	-		DDA3937_RS13825	0.25	-3.2
3,144,609	-		DDA3937_RS13825	0.25	-1.8
3,144,609	-		DDA3937_RS13825	0.25	-2.6
3,144,609	-				-0.4
3,144,609	-		DDA3937_RS13825	0.25	+0.1
3,144,609	-		DDA3937_RS13825	0.25	-1.2
3,144,609	-		DDA3937_RS13825	0.25	-0.0
3,144,660	+		DDA3937_RS13825	0.27	-0.8
3,144,661	-		DDA3937_RS13825	0.27	-2.3
3,144,661	-		DDA3937_RS13825	0.27	-1.8
3,144,661	-		DDA3937_RS13825	0.27	+1.4
3,144,661	-		DDA3937_RS13825	0.27	-1.5
3,144,678	+		DDA3937_RS13825	0.28	-2.6
3,144,678	+		DDA3937_RS13825	0.28	-2.0
3,144,692	+		DDA3937_RS13825	0.29	+1.6
3,144,693	-		DDA3937_RS13825	0.29	-2.7
3,144,693	-		DDA3937_RS13825	0.29	-1.6
3,144,693	-		DDA3937_RS13825	0.29	-2.7
3,144,807	+		DDA3937_RS13825	0.35	+0.6
3,144,901	+		DDA3937_RS13825	0.40	-1.0
3,144,901	+				-0.0
3,144,902	-		DDA3937_RS13825	0.40	-0.4
3,144,903	+		DDA3937_RS13825	0.40	-3.3
3,144,903	+		DDA3937_RS13825	0.40	+0.6
3,144,903	+				+2.4
3,144,903	+		DDA3937_RS13825	0.40	-3.6
3,144,903	+		DDA3937_RS13825	0.40	+0.3
3,144,903	+		DDA3937_RS13825	0.40	+2.1
3,144,903	+		DDA3937_RS13825	0.40	+0.6
3,144,904	-		DDA3937_RS13825	0.40	+2.2
3,144,904	-		DDA3937_RS13825	0.40	-0.8
3,144,904	-		DDA3937_RS13825	0.40	-3.0
3,144,904	-		DDA3937_RS13825	0.40	+0.1