Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13660

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,106,915	-		DDA3937_RS13655	0.12	-2.7
3,106,965	+		DDA3937_RS13655	0.19	+0.5
3,106,965	+		DDA3937_RS13655	0.19	-2.1
3,106,966	-		DDA3937_RS13655	0.19	+0.6
3,107,012	-		DDA3937_RS13655	0.25	-2.5
3,107,024	-		DDA3937_RS13655	0.27	-1.6
3,107,121	+		DDA3937_RS13655	0.40	+0.7
3,107,129	-		DDA3937_RS13655	0.41	+0.9
3,107,129	-		DDA3937_RS13655	0.41	-1.4
3,107,152	+		DDA3937_RS13655	0.44	-0.4
3,107,206	+		DDA3937_RS13655	0.52	-2.9
3,107,207	-		DDA3937_RS13655	0.52	-0.0
3,107,221	+		DDA3937_RS13655	0.54	+0.4
3,107,248	+		DDA3937_RS13655	0.58	+3.6
3,107,249	-		DDA3937_RS13655	0.58	-1.6
3,107,249	-		DDA3937_RS13655	0.58	+1.7
3,107,305	+		DDA3937_RS13655	0.66	-1.6
3,107,306	-		DDA3937_RS13655	0.66	+0.7
3,107,306	-		DDA3937_RS13655	0.66	-0.6
3,107,333	+		DDA3937_RS13655	0.69	+2.5
3,107,334	-		DDA3937_RS13655	0.70	-2.4
3,107,353	+		DDA3937_RS13655	0.72	-0.8
3,107,353	+		DDA3937_RS13655	0.72	-1.4
3,107,354	-		DDA3937_RS13655	0.72	-2.7
3,107,384	+		DDA3937_RS13655	0.76	+0.2
3,107,384	+				+0.6
3,107,385	-		DDA3937_RS13655	0.77	-1.4
3,107,431	+		DDA3937_RS13655	0.83	-2.4
3,107,440	+		DDA3937_RS13655	0.84	-2.3
3,107,440	+		DDA3937_RS13655	0.84	-0.0
3,107,441	-		DDA3937_RS13655	0.84	-1.6
3,107,441	-		DDA3937_RS13655	0.84	-1.5
3,107,441	-		DDA3937_RS13655	0.84	-1.6
3,107,441	-		DDA3937_RS13655	0.84	-1.0
3,107,441	-		DDA3937_RS13655	0.84	-2.6
3,107,441	-		DDA3937_RS13655	0.84	-1.4
3,107,442	+		DDA3937_RS13655	0.84	-2.0
3,107,442	+		DDA3937_RS13655	0.84	+0.3
3,107,442	+		DDA3937_RS13655	0.84	+2.0
3,107,442	+		DDA3937_RS13655	0.84	-0.0
3,107,442	+		DDA3937_RS13655	0.84	+0.2
3,107,442	+		DDA3937_RS13655	0.84	-0.4
3,107,442	+		DDA3937_RS13655	0.84	+2.4
3,107,442	+		DDA3937_RS13655	0.84	+0.6
3,107,442	+		DDA3937_RS13655	0.84	+0.0
3,107,442	+		DDA3937_RS13655	0.84	-3.7
3,107,443	-		DDA3937_RS13655	0.85	+0.1
3,107,443	-		DDA3937_RS13655	0.85	+0.2
3,107,443	-		DDA3937_RS13655	0.85	-0.4
3,107,443	-		DDA3937_RS13655	0.85	+0.6
3,107,443	-		DDA3937_RS13655	0.85	+1.6
3,107,443	-		DDA3937_RS13655	0.85	+0.4
3,107,450	-		DDA3937_RS13655	0.86	-0.6
3,107,554	+				-1.3
3,107,554	+				-1.9
3,107,554	+				-0.8
3,107,554	+				-1.3
3,107,555	-				-1.0
3,107,555	-				+1.1
3,107,555	-				-0.8
3,107,555	-				-1.3
3,107,562	-				-1.0
3,107,590	+				-1.0
3,107,624	+				-1.0
3,107,624	+				-2.4
3,107,624	+				+0.8
3,107,624	+				-1.4
3,107,625	-				-0.1
3,107,625	-				-0.8
3,107,625	-				-0.8
3,107,628	+				+2.6
3,107,657	+				-0.4
3,107,657	+				-2.4
3,107,658	-				-1.0
3,107,693	+				-0.4
3,107,693	+				+0.2
3,107,693	+				-3.1
3,107,693	+				-0.4
3,107,693	+				-2.3
3,107,693	+				-2.0
3,107,693	+				+2.0
3,107,693	+				-0.4
3,107,693	+				-1.0
3,107,693	+				-1.4
3,107,693	+				+0.6
3,107,693	+				-1.4
3,107,694	-				+0.4
3,107,694	-				-0.4
3,107,694	-				+0.7
3,107,694	-				-1.9
3,107,694	-				+1.7
3,107,694	-				-0.8
3,107,694	-				-1.4
3,107,694	-				+3.7
3,107,700	-				+1.0
3,107,745	+				+0.4
3,107,746	-				-0.8
3,107,748	+				-1.4
3,107,748	+				+0.0
3,107,748	+				-1.9
3,107,749	-				-2.1
3,107,749	-				-2.9
3,107,749	-				+1.2
3,107,749	-				+0.7
3,107,749	-				-2.7
3,107,768	+				+1.2
3,107,768	+				-0.0
3,107,783	+				+1.6
3,107,784	-				-1.4
3,107,784	-				-0.8
3,107,784	-				-0.5
3,107,787	-				+1.1
3,107,787	-				+0.4
3,107,822	-				+1.6
3,107,822	-				+0.4
3,107,822	-				+2.4
3,107,855	+				-2.3
3,107,868	+				+0.6
3,107,869	-				-2.6
3,107,872	+				+0.9
3,107,872	+				-0.4
3,107,873	-				-0.8
3,107,873	-				+1.1
3,107,892	-				-1.5
3,107,892	-				-2.0
3,107,978	+		DDA3937_RS13660	0.13	-1.4
3,107,979	-		DDA3937_RS13660	0.13	-1.2
3,108,034	+		DDA3937_RS13660	0.17	-0.3
3,108,078	+		DDA3937_RS13660	0.21	-0.8
3,108,078	+		DDA3937_RS13660	0.21	+0.4
3,108,079	-		DDA3937_RS13660	0.21	-2.5
3,108,155	-		DDA3937_RS13660	0.27	+0.4
3,108,211	+		DDA3937_RS13660	0.31	+0.7
3,108,212	-		DDA3937_RS13660	0.31	+1.7
3,108,251	-		DDA3937_RS13660	0.34	-0.4
3,108,261	+		DDA3937_RS13660	0.35	+1.7
3,108,262	-		DDA3937_RS13660	0.35	-3.1
3,108,278	-		DDA3937_RS13660	0.36	-0.8
3,108,278	-		DDA3937_RS13660	0.36	-0.9
3,108,278	-		DDA3937_RS13660	0.36	-1.4
3,108,341	+		DDA3937_RS13660	0.41	-0.4
3,108,350	-		DDA3937_RS13660	0.42	-2.8
3,108,385	+		DDA3937_RS13660	0.45	+0.6
3,108,385	+		DDA3937_RS13660	0.45	-1.3
3,108,386	-		DDA3937_RS13660	0.45	-2.0
3,108,386	-		DDA3937_RS13660	0.45	-1.6
3,108,393	+		DDA3937_RS13660	0.45	-0.9
3,108,393	+		DDA3937_RS13660	0.45	-1.0
3,108,393	+		DDA3937_RS13660	0.45	-2.3
3,108,394	-		DDA3937_RS13660	0.45	+1.7
3,108,394	-		DDA3937_RS13660	0.45	-0.7
3,108,409	+		DDA3937_RS13660	0.47	-1.3
3,108,451	+				-0.0
3,108,512	+		DDA3937_RS13660	0.55	-3.1
3,108,512	+		DDA3937_RS13660	0.55	-1.0
3,108,512	+		DDA3937_RS13660	0.55	-0.8
3,108,579	-		DDA3937_RS13660	0.60	-0.4
3,108,653	-		DDA3937_RS13660	0.66	+0.1
3,108,736	+		DDA3937_RS13660	0.72	-1.6
3,108,739	+		DDA3937_RS13660	0.72	-2.4
3,108,739	+		DDA3937_RS13660	0.72	-1.6
3,108,740	-		DDA3937_RS13660	0.72	-0.9
3,108,876	+		DDA3937_RS13660	0.83	-0.8
3,108,876	+				-0.0
3,108,876	+		DDA3937_RS13660	0.83	-2.4
3,108,876	+		DDA3937_RS13660	0.83	-2.3
3,108,877	-		DDA3937_RS13660	0.83	-0.7
3,108,877	-		DDA3937_RS13660	0.83	-1.4
3,108,877	-		DDA3937_RS13660	0.83	-2.1
3,108,877	-				+0.6
3,108,877	-		DDA3937_RS13660	0.83	+1.2
3,108,880	+		DDA3937_RS13660	0.83	-1.0
3,108,881	-		DDA3937_RS13660	0.83	-0.0
3,108,881	-		DDA3937_RS13660	0.83	-1.0
3,108,881	-		DDA3937_RS13660	0.83	-3.3
3,108,881	-		DDA3937_RS13660	0.83	-1.3
3,109,006	+				-2.0
3,109,006	+				-0.0
3,109,006	+				-0.4
3,109,079	+				-0.0
3,109,080	-				+2.7
3,109,080	-				+0.2
3,109,080	-				-0.8
3,109,080	-				+1.6
3,109,087	+				-1.4
3,109,109	-				+0.1
3,109,109	-				+0.9
3,109,116	+				-0.1
3,109,183	+				-3.1
3,109,184	-				-1.3
3,109,229	+				+0.0
3,109,306	-				+0.6
3,109,426	+				+0.3
3,109,427	-				+0.6
3,109,466	+				-0.4
3,109,466	+				+0.6
3,109,467	-				+0.6
3,109,487	+				+1.0
3,109,488	-				-1.0
3,109,605	-		DDA3937_RS13665	0.14	-1.4
3,109,637	-		DDA3937_RS13665	0.16	-2.8
3,109,661	+		DDA3937_RS13665	0.17	+1.6
3,109,662	-		DDA3937_RS13665	0.17	+1.0
3,109,707	+		DDA3937_RS13665	0.18	-1.9
3,109,875	+		DDA3937_RS13665	0.25	+1.4
3,109,875	+		DDA3937_RS13665	0.25	-0.4
3,109,876	-		DDA3937_RS13665	0.25	+2.0
3,109,933	-		DDA3937_RS13665	0.27	+1.6
3,109,946	+		DDA3937_RS13665	0.28	-1.0
3,109,947	-		DDA3937_RS13665	0.28	-1.7
3,109,947	-		DDA3937_RS13665	0.28	+1.1
3,109,975	+		DDA3937_RS13665	0.29	-0.6
3,109,975	+		DDA3937_RS13665	0.29	-0.1