Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13645

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,103,541	+				-0.8
3,103,558	+				-3.4
3,103,559	-				-0.3
3,103,559	-				+2.6
3,103,563	+				+0.2
3,103,563	+				-1.3
3,103,563	+				-0.8
3,103,563	+				+0.9
3,103,564	-				-0.1
3,103,564	-				-1.3
3,103,564	-				-2.5
3,103,564	-				-2.6
3,103,564	-				+0.1
3,103,588	+				-2.0
3,103,589	-				+1.0
3,103,601	+				-3.1
3,103,602	-				+0.3
3,103,602	-				-0.8
3,103,631	+				+1.2
3,103,631	+				+2.1
3,103,632	-				+2.3
3,103,632	-				-1.6
3,103,632	-				-3.9
3,103,657	+				+2.4
3,103,658	-				-0.4
3,103,659	+				-1.0
3,103,659	+				-2.4
3,103,659	+				-2.4
3,103,660	-				+1.6
3,103,660	-				-1.0
3,103,660	-				-1.6
3,103,660	-				-1.4
3,103,692	-				-1.4
3,103,731	+				-2.0
3,103,732	-				-1.6
3,103,732	-				+2.1
3,103,732	-				+1.7
3,103,795	-				+0.6
3,103,795	-				+1.5
3,103,795	-				-2.0
3,103,813	-				-1.0
3,103,813	-				-1.4
3,103,912	+				+2.2
3,103,912	+				-1.0
3,103,912	+				-0.6
3,103,912	+				-0.7
3,103,916	+				-0.0
3,103,917	-				+2.7
3,103,950	+				+1.4
3,103,965	-				+0.6
3,104,370	+				-2.4
3,104,373	-				-1.8
3,104,373	-				+0.9
3,104,381	-				+0.8
3,104,497	+				+1.4
3,104,522	+				+2.2
3,104,522	+				-0.4
3,104,544	+				+2.6
3,104,622	+				-2.1
3,104,622	+				-1.0
3,104,625	+				-1.9
3,104,625	+				-0.4
3,104,625	+				+1.1
3,104,628	+				+1.6
3,104,629	-				-1.6
3,104,629	-				+1.4
3,104,629	-				+2.1
3,104,629	-				-2.1
3,104,631	+				+0.3
3,104,631	+				-0.2
3,104,631	+				+0.9
3,104,632	-				-1.0
3,104,632	-				+0.3
3,104,632	-				-2.0
3,104,632	-				-1.5
3,104,632	-				-4.3
3,104,632	-				+0.8
3,104,642	-				+1.8
3,104,644	+				+0.6
3,104,644	+				-1.3
3,104,645	-				-1.5
3,104,645	-				+1.1
3,104,645	-				-1.3
3,104,656	-				+2.1
3,104,656	-				+1.3
3,104,683	-		DDA3937_RS13645	0.10	-2.4
3,104,683	-		DDA3937_RS13645	0.10	-0.4
3,104,686	+		DDA3937_RS13645	0.11	-2.4
3,104,694	+		DDA3937_RS13645	0.11	-1.8
3,104,694	+		DDA3937_RS13645	0.11	-0.8
3,104,694	+		DDA3937_RS13645	0.11	+2.9
3,104,694	+		DDA3937_RS13645	0.11	-0.8
3,104,695	-		DDA3937_RS13645	0.11	+0.5
3,104,696	+		DDA3937_RS13645	0.11	-1.1
3,104,801	-		DDA3937_RS13645	0.19	+0.9
3,104,828	+		DDA3937_RS13645	0.21	-0.5
3,104,844	+		DDA3937_RS13645	0.22	+1.4
3,104,844	+		DDA3937_RS13645	0.22	-0.0
3,105,067	+		DDA3937_RS13645	0.38	-0.3
3,105,067	+		DDA3937_RS13645	0.38	-0.8
3,105,067	+		DDA3937_RS13645	0.38	-1.0
3,105,068	-		DDA3937_RS13645	0.38	+3.0
3,105,068	-		DDA3937_RS13645	0.38	+2.1
3,105,068	-		DDA3937_RS13645	0.38	+0.7
3,105,073	-		DDA3937_RS13645	0.38	-1.3
3,105,084	+		DDA3937_RS13645	0.39	-1.3
3,105,084	+		DDA3937_RS13645	0.39	-0.4
3,105,087	+		DDA3937_RS13645	0.39	-0.4
3,105,087	+		DDA3937_RS13645	0.39	+1.5
3,105,088	-		DDA3937_RS13645	0.39	+1.0
3,105,088	-		DDA3937_RS13645	0.39	-0.0
3,105,090	+		DDA3937_RS13645	0.39	-1.3
3,105,091	-		DDA3937_RS13645	0.39	-0.2
3,105,104	+		DDA3937_RS13645	0.40	-1.6
3,105,105	-		DDA3937_RS13645	0.40	-0.2
3,105,105	-		DDA3937_RS13645	0.40	+0.3
3,105,219	+		DDA3937_RS13645	0.48	-2.5
3,105,220	-		DDA3937_RS13645	0.48	-2.7
3,105,220	-		DDA3937_RS13645	0.48	+2.5
3,105,255	-		DDA3937_RS13645	0.51	-2.5
3,105,261	+		DDA3937_RS13645	0.51	+1.4
3,105,261	+		DDA3937_RS13645	0.51	-1.0
3,105,277	-		DDA3937_RS13645	0.52	-1.6
3,105,301	+		DDA3937_RS13645	0.54	-1.6
3,105,331	-		DDA3937_RS13645	0.56	+0.8
3,105,367	-		DDA3937_RS13645	0.59	-1.8
3,105,385	-		DDA3937_RS13645	0.60	-1.9
3,105,385	-		DDA3937_RS13645	0.60	+0.8
3,105,385	-		DDA3937_RS13645	0.60	+3.5
3,105,389	-		DDA3937_RS13645	0.60	-1.3
3,105,445	-		DDA3937_RS13645	0.64	+2.4
3,105,499	-		DDA3937_RS13645	0.68	+0.7
3,105,499	-		DDA3937_RS13645	0.68	-0.4
3,105,499	-		DDA3937_RS13645	0.68	-0.2
3,105,502	+		DDA3937_RS13645	0.68	+0.8
3,105,551	-		DDA3937_RS13645	0.72	+1.0
3,105,551	-		DDA3937_RS13645	0.72	+1.3
3,105,573	+		DDA3937_RS13645	0.73	-3.0
3,105,599	+		DDA3937_RS13645	0.75	+0.6
3,105,604	+		DDA3937_RS13645	0.75	+1.4
3,105,615	+		DDA3937_RS13645	0.76	-2.4
3,105,616	-		DDA3937_RS13645	0.76	-1.3
3,105,619	+		DDA3937_RS13645	0.76	-2.4
3,105,646	+		DDA3937_RS13645	0.78	-0.0
3,105,646	+		DDA3937_RS13645	0.78	-1.0
3,105,647	-		DDA3937_RS13645	0.78	-0.0
3,105,693	+		DDA3937_RS13645	0.82	-1.4
3,105,694	-		DDA3937_RS13645	0.82	+0.8
3,105,694	-		DDA3937_RS13645	0.82	+0.2
3,105,721	+		DDA3937_RS13645	0.84	-0.4
3,105,832	-				-0.4
3,105,836	+				-2.1
3,105,901	-				-1.3
3,105,964	+				+1.4
3,106,118	+				+0.5
3,106,119	-				-0.4
3,106,140	-				+0.1
3,106,155	+				-2.0
3,106,156	-				-2.6
3,106,160	-				+0.7
3,106,242	-		DDA3937_RS13650	0.13	-2.4
3,106,257	-		DDA3937_RS13650	0.16	-0.8
3,106,262	+		DDA3937_RS13650	0.17	-2.0
3,106,302	+		DDA3937_RS13650	0.24	+1.6
3,106,304	+		DDA3937_RS13650	0.25	-1.4
3,106,304	+		DDA3937_RS13650	0.25	+0.1
3,106,304	+		DDA3937_RS13650	0.25	-0.8
3,106,308	+		DDA3937_RS13650	0.25	+0.6
3,106,308	+		DDA3937_RS13650	0.25	-3.1
3,106,317	-		DDA3937_RS13650	0.27	+2.2
3,106,330	-		DDA3937_RS13650	0.29	+1.0
3,106,336	-		DDA3937_RS13650	0.31	-1.4
3,106,421	+		DDA3937_RS13650	0.46	+1.7
3,106,428	+		DDA3937_RS13650	0.48	-2.9
3,106,442	+		DDA3937_RS13650	0.50	-0.4
3,106,442	+		DDA3937_RS13650	0.50	-0.8
3,106,443	-		DDA3937_RS13650	0.50	-3.0
3,106,446	+		DDA3937_RS13650	0.51	-0.0
3,106,446	+				-0.0
3,106,447	-		DDA3937_RS13650	0.51	-2.1
3,106,511	+		DDA3937_RS13650	0.63	-0.3
3,106,531	+		DDA3937_RS13650	0.66	+3.6
3,106,586	-		DDA3937_RS13650	0.77	-1.8
3,106,619	-		DDA3937_RS13650	0.83	-2.3
3,106,635	+		DDA3937_RS13650	0.86	+1.0
3,106,635	+		DDA3937_RS13650	0.86	+0.6
3,106,636	-		DDA3937_RS13650	0.86	-0.0
3,106,741	+				-1.0
3,106,743	+				+1.2
3,106,746	-				-0.4
3,106,915	-		DDA3937_RS13655	0.12	-2.7