Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13010

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,968,923	+		DDA3937_RS13005	0.42	-2.6
2,968,923	+		DDA3937_RS13005	0.42	+0.6
2,968,923	+		DDA3937_RS13005	0.42	+2.0
2,968,923	+				+0.6
2,968,923	+		DDA3937_RS13005	0.42	+0.0
2,968,924	-		DDA3937_RS13005	0.42	-0.1
2,968,924	-		DDA3937_RS13005	0.42	+2.7
2,969,007	+		DDA3937_RS13005	0.48	-2.2
2,969,007	+		DDA3937_RS13005	0.48	+1.1
2,969,007	+		DDA3937_RS13005	0.48	+1.0
2,969,008	-		DDA3937_RS13005	0.48	+0.4
2,969,008	-				+0.6
2,969,008	-		DDA3937_RS13005	0.48	+0.9
2,969,009	+		DDA3937_RS13005	0.48	-1.8
2,969,009	+		DDA3937_RS13005	0.48	+3.6
2,969,009	+		DDA3937_RS13005	0.48	-0.7
2,969,009	+		DDA3937_RS13005	0.48	-1.2
2,969,009	+		DDA3937_RS13005	0.48	+0.3
2,969,009	+		DDA3937_RS13005	0.48	-1.4
2,969,010	-		DDA3937_RS13005	0.48	-1.2
2,969,010	-		DDA3937_RS13005	0.48	+0.0
2,969,010	-		DDA3937_RS13005	0.48	-0.4
2,969,010	-		DDA3937_RS13005	0.48	-2.7
2,969,010	-				+0.0
2,969,013	+		DDA3937_RS13005	0.48	+0.9
2,969,014	-		DDA3937_RS13005	0.48	+0.6
2,969,037	+		DDA3937_RS13005	0.50	+0.0
2,969,082	+		DDA3937_RS13005	0.53	-2.4
2,969,083	-		DDA3937_RS13005	0.53	-1.5
2,969,085	+				+1.6
2,969,085	+		DDA3937_RS13005	0.53	+0.6
2,969,086	-		DDA3937_RS13005	0.53	+0.4
2,969,086	-		DDA3937_RS13005	0.53	-1.1
2,969,086	-		DDA3937_RS13005	0.53	-1.2
2,969,086	-		DDA3937_RS13005	0.53	+0.9
2,969,096	+		DDA3937_RS13005	0.54	-2.7
2,969,122	-		DDA3937_RS13005	0.55	-2.0
2,969,169	-		DDA3937_RS13005	0.58	-1.4
2,969,236	+		DDA3937_RS13005	0.63	-2.0
2,969,310	-		DDA3937_RS13005	0.68	-1.1
2,969,342	+		DDA3937_RS13005	0.70	-2.3
2,969,342	+		DDA3937_RS13005	0.70	+0.2
2,969,342	+		DDA3937_RS13005	0.70	+0.8
2,969,343	-		DDA3937_RS13005	0.70	+2.9
2,969,433	-		DDA3937_RS13005	0.76	+0.4
2,969,527	-		DDA3937_RS13005	0.82	+0.6
2,969,527	-		DDA3937_RS13005	0.82	+2.8
2,969,733	+				-1.7
2,969,733	+				+0.0
2,969,733	+				+0.8
2,969,733	+				+0.6
2,969,734	-				+1.6
2,969,734	-				-4.0
2,969,734	-				+0.0
2,969,839	+				-2.5
2,969,858	-				-0.1
2,969,858	-				-1.0
2,969,858	-				+1.1
2,969,939	+				-0.7
2,969,939	+				+0.3
2,969,940	-				+0.0
2,969,940	-				-1.2
2,970,017	+				-2.0
2,970,203	+		DDA3937_RS13010	0.21	+1.1
2,970,203	+		DDA3937_RS13010	0.21	+1.6
2,970,203	+		DDA3937_RS13010	0.21	-0.6
2,970,203	+		DDA3937_RS13010	0.21	+1.1
2,970,203	+		DDA3937_RS13010	0.21	+0.5
2,970,203	+		DDA3937_RS13010	0.21	+1.2
2,970,310	+		DDA3937_RS13010	0.29	+1.9
2,970,310	+		DDA3937_RS13010	0.29	+0.4
2,970,310	+		DDA3937_RS13010	0.29	+0.0
2,970,311	-		DDA3937_RS13010	0.29	+2.1
2,970,311	-		DDA3937_RS13010	0.29	+0.0
2,970,818	+		DDA3937_RS13010	0.66	+2.9
2,970,818	+		DDA3937_RS13010	0.66	-0.4
2,970,920	+		DDA3937_RS13010	0.74	-0.4
2,971,069	+		DDA3937_RS13010	0.85	+1.5
2,971,069	+		DDA3937_RS13010	0.85	+3.0
2,971,069	+		DDA3937_RS13010	0.85	+1.9
2,971,070	-		DDA3937_RS13010	0.85	-2.2
2,971,070	-		DDA3937_RS13010	0.85	+1.3
2,971,070	-		DDA3937_RS13010	0.85	-1.0
2,971,127	+		DDA3937_RS13010	0.89	-1.5
2,971,127	+		DDA3937_RS13010	0.89	-0.7
2,971,127	+		DDA3937_RS13010	0.89	+0.7
2,971,128	-		DDA3937_RS13010	0.89	-1.0
2,971,128	-				+0.0
2,971,284	-				+2.7
2,971,302	+				-1.0
2,971,302	+				-2.1
2,971,302	+				+1.3
2,971,302	+				+1.8
2,971,302	+				+1.2
2,971,303	-				+1.2
2,971,313	+				-1.0
2,971,314	-				+2.4
2,971,317	+				-1.8
2,971,317	+				-2.0
2,971,318	-				+1.7
2,971,318	-				+0.6
2,971,318	-				+0.0
2,971,318	-				+0.5
2,971,318	-				+2.5
2,971,318	-				+2.4
2,971,318	-				-2.3
2,971,318	-				-1.4
2,971,320	+				+2.4
2,971,320	+				-1.4
2,971,320	+				-0.2
2,971,320	+				+1.5
2,971,321	-				-2.9
2,971,321	-				-0.4
2,971,321	-				-0.3
2,971,336	+				-0.4
2,971,336	+				+0.7
2,971,336	+				-1.8
2,971,403	-				-2.1
2,971,546	-		DDA3937_RS13015	0.23	+1.6
2,971,618	+		DDA3937_RS13015	0.32	-1.6
2,971,618	+		DDA3937_RS13015	0.32	-1.5
2,971,618	+		DDA3937_RS13015	0.32	+0.1
2,971,618	+		DDA3937_RS13015	0.32	-0.8
2,971,619	-		DDA3937_RS13015	0.32	-2.4
2,971,647	-		DDA3937_RS13015	0.36	+1.1
2,971,647	-		DDA3937_RS13015	0.36	-2.0
2,971,655	-		DDA3937_RS13015	0.37	+1.8
2,971,734	+		DDA3937_RS13015	0.46	+0.8
2,971,734	+		DDA3937_RS13015	0.46	+0.5
2,971,734	+		DDA3937_RS13015	0.46	-2.1
2,971,735	-		DDA3937_RS13015	0.46	-0.4
2,971,735	-		DDA3937_RS13015	0.46	-1.1
2,971,735	-		DDA3937_RS13015	0.46	-1.7
2,971,945	+		DDA3937_RS13015	0.72	+1.0
2,971,949	+		DDA3937_RS13015	0.73	-0.4
2,971,950	-		DDA3937_RS13015	0.73	-1.8
2,971,950	-		DDA3937_RS13015	0.73	-0.6
2,971,950	-		DDA3937_RS13015	0.73	+0.4
2,971,950	-		DDA3937_RS13015	0.73	-0.7
2,971,996	+		DDA3937_RS13015	0.78	-1.4
2,972,001	-		DDA3937_RS13015	0.79	+0.9
2,972,066	+		DDA3937_RS13015	0.87	+1.5
2,972,067	-		DDA3937_RS13015	0.87	-1.3
2,972,097	+				-1.0
2,972,098	-				-2.0
2,972,144	-				-2.5
2,972,144	-				+1.6
2,972,171	+				+0.1
2,972,171	+				-1.5
2,972,171	+				+1.4
2,972,171	+				+0.6
2,972,171	+				-0.1
2,972,171	+				+1.6
2,972,171	+				+0.7
2,972,171	+				+1.2
2,972,171	+				+0.0
2,972,171	+				-2.3
2,972,171	+				-1.8
2,972,171	+				+1.7
2,972,171	+				-0.7
2,972,171	+				-2.3
2,972,172	-				-1.5
2,972,172	-				-2.5
2,972,172	-				-1.6
2,972,172	-				+1.9
2,972,172	-				+1.4
2,972,172	-				-2.0
2,972,172	-				-0.2
2,972,172	-				-3.5
2,972,172	-				-1.2
2,972,172	-				-2.8
2,972,172	-				-0.7
2,972,172	-				+1.3
2,972,172	-				+0.3
2,972,172	-				-1.0
2,972,172	-				+0.8
2,972,172	-				-0.8
2,972,172	-				-0.4
2,972,173	+				-0.7
2,972,173	+				+1.1
2,972,173	+				-3.5
2,972,173	+				+0.6
2,972,173	+				-0.9
2,972,173	+				-1.8
2,972,173	+				+0.8
2,972,173	+				+2.7
2,972,174	-				+1.0
2,972,174	-				-2.5
2,972,174	-				+0.1
2,972,174	-				+2.4
2,972,174	-				-1.7
2,972,193	-				+0.6
2,972,200	+				-1.4
2,972,208	+				-1.8
2,972,254	-				-2.4