Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13000

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,964,460	-				+1.8
2,964,463	-				+2.4
2,964,470	-				-2.3
2,964,470	-				-3.4
2,964,473	-				-0.7
2,964,476	-				+1.2
2,964,476	-				-2.1
2,964,476	-				+0.7
2,964,567	+				-0.2
2,964,567	+				+1.8
2,964,568	-				+0.0
2,964,568	-				-2.9
2,964,568	-				-2.0
2,964,705	-				-0.1
2,964,840	-				+0.3
2,964,964	-		DDA3937_RS13000	0.12	+2.4
2,965,280	-		DDA3937_RS13000	0.21	-1.0
2,965,369	+		DDA3937_RS13000	0.24	+1.2
2,965,383	+		DDA3937_RS13000	0.24	-0.5
2,965,383	+		DDA3937_RS13000	0.24	-1.5
2,965,384	-		DDA3937_RS13000	0.24	+2.8
2,965,521	+				+0.0
2,965,522	-		DDA3937_RS13000	0.28	-1.4
2,965,556	+		DDA3937_RS13000	0.29	-1.8
2,965,816	+		DDA3937_RS13000	0.37	-0.4
2,965,848	+		DDA3937_RS13000	0.38	+1.7
2,965,848	+		DDA3937_RS13000	0.38	+2.6
2,965,848	+		DDA3937_RS13000	0.38	-1.2
2,965,950	+		DDA3937_RS13000	0.41	+0.2
2,965,977	-		DDA3937_RS13000	0.42	+1.1
2,966,024	-		DDA3937_RS13000	0.43	+3.5
2,966,068	+		DDA3937_RS13000	0.44	+0.9
2,966,104	+		DDA3937_RS13000	0.45	-1.7
2,966,105	-		DDA3937_RS13000	0.45	-1.5
2,966,315	-		DDA3937_RS13000	0.51	-0.7
2,966,315	-		DDA3937_RS13000	0.51	+0.0
2,966,699	+		DDA3937_RS13000	0.62	-1.4
2,966,700	-		DDA3937_RS13000	0.62	+0.8
2,966,983	+		DDA3937_RS13000	0.71	-1.5
2,966,983	+		DDA3937_RS13000	0.71	+1.1
2,966,984	-		DDA3937_RS13000	0.71	+0.8
2,966,987	-		DDA3937_RS13000	0.71	-0.1
2,966,993	-		DDA3937_RS13000	0.71	+2.5
2,967,277	+		DDA3937_RS13000	0.79	+2.5
2,967,278	-		DDA3937_RS13000	0.79	+0.4
2,967,283	+		DDA3937_RS13000	0.79	-1.5
2,967,469	+		DDA3937_RS13000	0.85	+0.9
2,967,469	+		DDA3937_RS13000	0.85	+0.6
2,967,470	-		DDA3937_RS13000	0.85	-1.8
2,967,470	-		DDA3937_RS13000	0.85	-1.4
2,967,470	-		DDA3937_RS13000	0.85	+1.5
2,967,470	-		DDA3937_RS13000	0.85	+2.6
2,967,470	-		DDA3937_RS13000	0.85	-1.7
2,967,822	+				+3.6
2,967,870	+				+0.6
2,967,949	-				+0.3
2,967,981	+				+1.9
2,967,981	+				+0.9
2,967,981	+				+0.0
2,967,981	+				-1.0
2,967,981	+				-1.7
2,967,981	+				-0.4
2,967,981	+				+0.5
2,967,981	+				-2.2
2,967,981	+				+1.4
2,967,981	+				+0.6
2,967,981	+				-2.1
2,967,981	+				-1.0
2,967,981	+				+1.0
2,967,981	+				-0.9
2,967,981	+				-0.7
2,967,982	-				-2.5
2,967,982	-				-1.4
2,967,982	-				+1.8
2,967,982	-				+1.6
2,967,982	-				-1.8
2,967,982	-				-2.3
2,967,982	-				+2.6
2,967,982	-				-1.4
2,967,982	-				+1.2
2,967,982	-				+2.5
2,967,982	-				-1.7
2,967,982	-				-1.0
2,967,982	-				+1.5
2,967,982	-				+1.3
2,967,982	-				+0.8
2,967,982	-				-1.0
2,967,982	-				+0.0
2,967,982	-				-0.4
2,967,982	-				-1.0
2,967,982	-				-1.2
2,967,982	-				-1.4
2,967,982	-				+1.5
2,967,982	-				+0.5
2,967,985	+				-1.8
2,967,985	+				-2.2
2,967,985	+				+1.6
2,967,985	+				-0.0
2,967,985	+				+1.0
2,967,985	+				+1.6
2,967,985	+				+1.2
2,967,985	+				+3.0
2,967,985	+				-1.0
2,967,986	-				+1.5
2,967,986	-				+0.4
2,967,986	-				-0.7
2,968,030	+				-0.7
2,968,054	+				+0.8
2,968,054	+				+1.3
2,968,055	-				+1.4
2,968,055	-				+0.2
2,968,055	-				+0.3
2,968,055	-				+2.8
2,968,055	-				-2.4
2,968,055	-				-1.4
2,968,056	+				+0.8
2,968,056	+				-1.5
2,968,056	+				+0.9
2,968,056	+				+1.9
2,968,056	+				-0.7
2,968,056	+				+1.0
2,968,056	+				-0.4
2,968,056	+				+2.2
2,968,056	+				+0.1
2,968,057	-				+2.0
2,968,057	-				-2.5
2,968,057	-				-1.0
2,968,057	-				-3.0
2,968,057	-				-2.4
2,968,057	-				-1.2
2,968,057	-				+1.5
2,968,057	-				-0.3
2,968,067	+				-0.7
2,968,081	+				+0.6
2,968,118	+				-1.0
2,968,197	+				-2.1
2,968,198	-				+1.4
2,968,226	+				-1.0
2,968,227	-				+1.8
2,968,227	-				-2.2
2,968,227	-				-1.0
2,968,261	+				+1.6
2,968,262	-				-2.7
2,968,262	-				-0.7
2,968,264	-				+0.5
2,968,264	-				+0.6
2,968,264	-				-1.2
2,968,264	-				-1.2
2,968,264	-				+1.9
2,968,264	-				+1.8
2,968,264	-				-1.2
2,968,283	+				+2.6
2,968,284	-				-0.7
2,968,296	-				-2.2
2,968,322	-				+0.2
2,968,354	-				-1.4
2,968,357	-				-0.1
2,968,357	-				+0.3
2,968,370	+				-2.1
2,968,370	+				-1.2
2,968,371	-				+2.0
2,968,389	+				-1.0
2,968,427	+				+0.2
2,968,428	-				+2.9
2,968,428	-				-0.7
2,968,514	+		DDA3937_RS13005	0.15	-2.4
2,968,514	+		DDA3937_RS13005	0.15	+2.4
2,968,515	-		DDA3937_RS13005	0.15	-0.4
2,968,515	-		DDA3937_RS13005	0.15	-2.0
2,968,515	-		DDA3937_RS13005	0.15	+2.4
2,968,575	+		DDA3937_RS13005	0.19	+1.9
2,968,575	+		DDA3937_RS13005	0.19	+2.2
2,968,575	+		DDA3937_RS13005	0.19	-1.0
2,968,575	+		DDA3937_RS13005	0.19	-0.2
2,968,575	+		DDA3937_RS13005	0.19	-1.1
2,968,576	-		DDA3937_RS13005	0.19	+1.4
2,968,632	-		DDA3937_RS13005	0.23	-2.5
2,968,688	+		DDA3937_RS13005	0.26	-0.4
2,968,688	+		DDA3937_RS13005	0.26	-1.8
2,968,688	+		DDA3937_RS13005	0.26	-3.0
2,968,688	+		DDA3937_RS13005	0.26	-1.4
2,968,688	+		DDA3937_RS13005	0.26	-1.8
2,968,689	-				+0.6
2,968,689	-		DDA3937_RS13005	0.26	+0.0
2,968,689	-		DDA3937_RS13005	0.26	+1.6
2,968,692	+		DDA3937_RS13005	0.27	-3.6
2,968,692	+		DDA3937_RS13005	0.27	+1.0
2,968,692	+		DDA3937_RS13005	0.27	+0.2
2,968,692	+				-0.4
2,968,693	-		DDA3937_RS13005	0.27	-2.2
2,968,693	-		DDA3937_RS13005	0.27	-1.2
2,968,693	-		DDA3937_RS13005	0.27	-1.4
2,968,732	+		DDA3937_RS13005	0.29	+0.8
2,968,732	+		DDA3937_RS13005	0.29	+2.5
2,968,732	+		DDA3937_RS13005	0.29	+2.4
2,968,732	+		DDA3937_RS13005	0.29	-0.4
2,968,732	+		DDA3937_RS13005	0.29	-2.1
2,968,732	+		DDA3937_RS13005	0.29	+0.8
2,968,733	-		DDA3937_RS13005	0.29	-0.7
2,968,733	-		DDA3937_RS13005	0.29	+2.5
2,968,733	-		DDA3937_RS13005	0.29	+4.3
2,968,733	-		DDA3937_RS13005	0.29	-1.3
2,968,733	-		DDA3937_RS13005	0.29	-1.4
2,968,733	-		DDA3937_RS13005	0.29	-1.8
2,968,805	+		DDA3937_RS13005	0.34	-2.8
2,968,826	+		DDA3937_RS13005	0.36	+1.5
2,968,826	+		DDA3937_RS13005	0.36	-2.8
2,968,827	-		DDA3937_RS13005	0.36	+1.0
2,968,841	+		DDA3937_RS13005	0.37	-1.8
2,968,868	+		DDA3937_RS13005	0.38	+0.0
2,968,869	-		DDA3937_RS13005	0.38	+0.2
2,968,872	-		DDA3937_RS13005	0.39	-1.7
2,968,923	+		DDA3937_RS13005	0.42	-2.6
2,968,923	+		DDA3937_RS13005	0.42	+0.6
2,968,923	+		DDA3937_RS13005	0.42	+2.0
2,968,923	+				+0.6
2,968,923	+		DDA3937_RS13005	0.42	+0.0
2,968,924	-		DDA3937_RS13005	0.42	-0.1
2,968,924	-		DDA3937_RS13005	0.42	+2.7