Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13000

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS12995 and DDA3937_RS13000 are separated by 128 nucleotidesDDA3937_RS13000 and DDA3937_RS13005 are separated by 293 nucleotides DDA3937_RS12995: DDA3937_RS12995 - lipoprotein-releasing ABC transporter permease subunit LolC, at 2,963,213 to 2,964,415 _RS12995 DDA3937_RS13000: DDA3937_RS13000 - transcription-repair coupling factor, at 2,964,544 to 2,967,996 _RS13000 DDA3937_RS13005: DDA3937_RS13005 - EAL domain-containing protein, at 2,968,290 to 2,969,795 _RS13005 Position (kb) 2964 2965 2966 2967 2968Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2964.460 kb on - strandat 2964.463 kb on - strandat 2964.470 kb on - strandat 2964.470 kb on - strandat 2964.473 kb on - strandat 2964.476 kb on - strandat 2964.476 kb on - strandat 2964.476 kb on - strandat 2964.567 kb on + strandat 2964.567 kb on + strandat 2964.568 kb on - strandat 2964.568 kb on - strandat 2964.568 kb on - strandat 2964.705 kb on - strandat 2964.840 kb on - strandat 2964.964 kb on - strand, within DDA3937_RS13000at 2965.280 kb on - strand, within DDA3937_RS13000at 2965.369 kb on + strand, within DDA3937_RS13000at 2965.383 kb on + strand, within DDA3937_RS13000at 2965.383 kb on + strand, within DDA3937_RS13000at 2965.384 kb on - strand, within DDA3937_RS13000at 2965.521 kb on + strandat 2965.522 kb on - strand, within DDA3937_RS13000at 2965.556 kb on + strand, within DDA3937_RS13000at 2965.816 kb on + strand, within DDA3937_RS13000at 2965.848 kb on + strand, within DDA3937_RS13000at 2965.848 kb on + strand, within DDA3937_RS13000at 2965.848 kb on + strand, within DDA3937_RS13000at 2965.950 kb on + strand, within DDA3937_RS13000at 2965.977 kb on - strand, within DDA3937_RS13000at 2966.024 kb on - strand, within DDA3937_RS13000at 2966.068 kb on + strand, within DDA3937_RS13000at 2966.104 kb on + strand, within DDA3937_RS13000at 2966.105 kb on - strand, within DDA3937_RS13000at 2966.315 kb on - strand, within DDA3937_RS13000at 2966.315 kb on - strand, within DDA3937_RS13000at 2966.699 kb on + strand, within DDA3937_RS13000at 2966.700 kb on - strand, within DDA3937_RS13000at 2966.983 kb on + strand, within DDA3937_RS13000at 2966.983 kb on + strand, within DDA3937_RS13000at 2966.984 kb on - strand, within DDA3937_RS13000at 2966.987 kb on - strand, within DDA3937_RS13000at 2966.993 kb on - strand, within DDA3937_RS13000at 2967.277 kb on + strand, within DDA3937_RS13000at 2967.278 kb on - strand, within DDA3937_RS13000at 2967.283 kb on + strand, within DDA3937_RS13000at 2967.469 kb on + strand, within DDA3937_RS13000at 2967.469 kb on + strand, within DDA3937_RS13000at 2967.470 kb on - strand, within DDA3937_RS13000at 2967.470 kb on - strand, within DDA3937_RS13000at 2967.470 kb on - strand, within DDA3937_RS13000at 2967.470 kb on - strand, within DDA3937_RS13000at 2967.470 kb on - strand, within DDA3937_RS13000at 2967.822 kb on + strandat 2967.870 kb on + strandat 2967.949 kb on - strandat 2967.981 kb on + strandat 2967.981 kb on + strandat 2967.981 kb on + strandat 2967.981 kb on + strandat 2967.981 kb on + strandat 2967.981 kb on + strandat 2967.981 kb on + strandat 2967.981 kb on + strandat 2967.981 kb on + strandat 2967.981 kb on + strandat 2967.981 kb on + strandat 2967.981 kb on + strandat 2967.981 kb on + strandat 2967.981 kb on + strandat 2967.981 kb on + strandat 2967.982 kb on - strandat 2967.982 kb on - strandat 2967.982 kb on - strandat 2967.982 kb on - strandat 2967.982 kb on - strandat 2967.982 kb on - strandat 2967.982 kb on - strandat 2967.982 kb on - strandat 2967.982 kb on - strandat 2967.982 kb on - strandat 2967.982 kb on - strandat 2967.982 kb on - strandat 2967.982 kb on - strandat 2967.982 kb on - strandat 2967.982 kb on - strandat 2967.982 kb on - strandat 2967.982 kb on - strandat 2967.982 kb on - strandat 2967.982 kb on - strandat 2967.982 kb on - strandat 2967.982 kb on - strandat 2967.982 kb on - strandat 2967.982 kb on - strandat 2967.985 kb on + strandat 2967.985 kb on + strandat 2967.985 kb on + strandat 2967.985 kb on + strandat 2967.985 kb on + strandat 2967.985 kb on + strandat 2967.985 kb on + strandat 2967.985 kb on + strandat 2967.985 kb on + strandat 2967.986 kb on - strandat 2967.986 kb on - strandat 2967.986 kb on - strandat 2968.030 kb on + strandat 2968.054 kb on + strandat 2968.054 kb on + strandat 2968.055 kb on - strandat 2968.055 kb on - strandat 2968.055 kb on - strandat 2968.055 kb on - strandat 2968.055 kb on - strandat 2968.055 kb on - strandat 2968.056 kb on + strandat 2968.056 kb on + strandat 2968.056 kb on + strandat 2968.056 kb on + strandat 2968.056 kb on + strandat 2968.056 kb on + strandat 2968.056 kb on + strandat 2968.056 kb on + strandat 2968.056 kb on + strandat 2968.057 kb on - strandat 2968.057 kb on - strandat 2968.057 kb on - strandat 2968.057 kb on - strandat 2968.057 kb on - strandat 2968.057 kb on - strandat 2968.057 kb on - strandat 2968.057 kb on - strandat 2968.067 kb on + strandat 2968.081 kb on + strandat 2968.118 kb on + strandat 2968.197 kb on + strandat 2968.198 kb on - strandat 2968.226 kb on + strandat 2968.227 kb on - strandat 2968.227 kb on - strandat 2968.227 kb on - strandat 2968.261 kb on + strandat 2968.262 kb on - strandat 2968.262 kb on - strandat 2968.264 kb on - strandat 2968.264 kb on - strandat 2968.264 kb on - strandat 2968.264 kb on - strandat 2968.264 kb on - strandat 2968.264 kb on - strandat 2968.264 kb on - strandat 2968.283 kb on + strandat 2968.284 kb on - strandat 2968.296 kb on - strandat 2968.322 kb on - strandat 2968.354 kb on - strandat 2968.357 kb on - strandat 2968.357 kb on - strandat 2968.370 kb on + strandat 2968.370 kb on + strandat 2968.371 kb on - strandat 2968.389 kb on + strandat 2968.427 kb on + strandat 2968.428 kb on - strandat 2968.428 kb on - strandat 2968.514 kb on + strand, within DDA3937_RS13005at 2968.514 kb on + strand, within DDA3937_RS13005at 2968.515 kb on - strand, within DDA3937_RS13005at 2968.515 kb on - strand, within DDA3937_RS13005at 2968.515 kb on - strand, within DDA3937_RS13005at 2968.575 kb on + strand, within DDA3937_RS13005at 2968.575 kb on + strand, within DDA3937_RS13005at 2968.575 kb on + strand, within DDA3937_RS13005at 2968.575 kb on + strand, within DDA3937_RS13005at 2968.575 kb on + strand, within DDA3937_RS13005at 2968.576 kb on - strand, within DDA3937_RS13005at 2968.632 kb on - strand, within DDA3937_RS13005at 2968.688 kb on + strand, within DDA3937_RS13005at 2968.688 kb on + strand, within DDA3937_RS13005at 2968.688 kb on + strand, within DDA3937_RS13005at 2968.688 kb on + strand, within DDA3937_RS13005at 2968.688 kb on + strand, within DDA3937_RS13005at 2968.689 kb on - strandat 2968.689 kb on - strand, within DDA3937_RS13005at 2968.689 kb on - strand, within DDA3937_RS13005at 2968.692 kb on + strand, within DDA3937_RS13005at 2968.692 kb on + strand, within DDA3937_RS13005at 2968.692 kb on + strand, within DDA3937_RS13005at 2968.692 kb on + strandat 2968.693 kb on - strand, within DDA3937_RS13005at 2968.693 kb on - strand, within DDA3937_RS13005at 2968.693 kb on - strand, within DDA3937_RS13005at 2968.732 kb on + strand, within DDA3937_RS13005at 2968.732 kb on + strand, within DDA3937_RS13005at 2968.732 kb on + strand, within DDA3937_RS13005at 2968.732 kb on + strand, within DDA3937_RS13005at 2968.732 kb on + strand, within DDA3937_RS13005at 2968.732 kb on + strand, within DDA3937_RS13005at 2968.733 kb on - strand, within DDA3937_RS13005at 2968.733 kb on - strand, within DDA3937_RS13005at 2968.733 kb on - strand, within DDA3937_RS13005at 2968.733 kb on - strand, within DDA3937_RS13005at 2968.733 kb on - strand, within DDA3937_RS13005at 2968.733 kb on - strand, within DDA3937_RS13005at 2968.805 kb on + strand, within DDA3937_RS13005at 2968.826 kb on + strand, within DDA3937_RS13005at 2968.826 kb on + strand, within DDA3937_RS13005at 2968.827 kb on - strand, within DDA3937_RS13005at 2968.841 kb on + strand, within DDA3937_RS13005at 2968.868 kb on + strand, within DDA3937_RS13005at 2968.869 kb on - strand, within DDA3937_RS13005at 2968.872 kb on - strand, within DDA3937_RS13005at 2968.923 kb on + strand, within DDA3937_RS13005at 2968.923 kb on + strand, within DDA3937_RS13005at 2968.923 kb on + strand, within DDA3937_RS13005at 2968.923 kb on + strandat 2968.923 kb on + strand, within DDA3937_RS13005at 2968.924 kb on - strand, within DDA3937_RS13005at 2968.924 kb on - strand, within DDA3937_RS13005

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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2,964,460 - +1.8
2,964,463 - +2.4
2,964,470 - -2.3
2,964,470 - -3.4
2,964,473 - -0.7
2,964,476 - +1.2
2,964,476 - -2.1
2,964,476 - +0.7
2,964,567 + -0.2
2,964,567 + +1.8
2,964,568 - +0.0
2,964,568 - -2.9
2,964,568 - -2.0
2,964,705 - -0.1
2,964,840 - +0.3
2,964,964 - DDA3937_RS13000 0.12 +2.4
2,965,280 - DDA3937_RS13000 0.21 -1.0
2,965,369 + DDA3937_RS13000 0.24 +1.2
2,965,383 + DDA3937_RS13000 0.24 -0.5
2,965,383 + DDA3937_RS13000 0.24 -1.5
2,965,384 - DDA3937_RS13000 0.24 +2.8
2,965,521 + +0.0
2,965,522 - DDA3937_RS13000 0.28 -1.4
2,965,556 + DDA3937_RS13000 0.29 -1.8
2,965,816 + DDA3937_RS13000 0.37 -0.4
2,965,848 + DDA3937_RS13000 0.38 +1.7
2,965,848 + DDA3937_RS13000 0.38 +2.6
2,965,848 + DDA3937_RS13000 0.38 -1.2
2,965,950 + DDA3937_RS13000 0.41 +0.2
2,965,977 - DDA3937_RS13000 0.42 +1.1
2,966,024 - DDA3937_RS13000 0.43 +3.5
2,966,068 + DDA3937_RS13000 0.44 +0.9
2,966,104 + DDA3937_RS13000 0.45 -1.7
2,966,105 - DDA3937_RS13000 0.45 -1.5
2,966,315 - DDA3937_RS13000 0.51 -0.7
2,966,315 - DDA3937_RS13000 0.51 +0.0
2,966,699 + DDA3937_RS13000 0.62 -1.4
2,966,700 - DDA3937_RS13000 0.62 +0.8
2,966,983 + DDA3937_RS13000 0.71 -1.5
2,966,983 + DDA3937_RS13000 0.71 +1.1
2,966,984 - DDA3937_RS13000 0.71 +0.8
2,966,987 - DDA3937_RS13000 0.71 -0.1
2,966,993 - DDA3937_RS13000 0.71 +2.5
2,967,277 + DDA3937_RS13000 0.79 +2.5
2,967,278 - DDA3937_RS13000 0.79 +0.4
2,967,283 + DDA3937_RS13000 0.79 -1.5
2,967,469 + DDA3937_RS13000 0.85 +0.9
2,967,469 + DDA3937_RS13000 0.85 +0.6
2,967,470 - DDA3937_RS13000 0.85 -1.8
2,967,470 - DDA3937_RS13000 0.85 -1.4
2,967,470 - DDA3937_RS13000 0.85 +1.5
2,967,470 - DDA3937_RS13000 0.85 +2.6
2,967,470 - DDA3937_RS13000 0.85 -1.7
2,967,822 + +3.6
2,967,870 + +0.6
2,967,949 - +0.3
2,967,981 + +1.9
2,967,981 + +0.9
2,967,981 + +0.0
2,967,981 + -1.0
2,967,981 + -1.7
2,967,981 + -0.4
2,967,981 + +0.5
2,967,981 + -2.2
2,967,981 + +1.4
2,967,981 + +0.6
2,967,981 + -2.1
2,967,981 + -1.0
2,967,981 + +1.0
2,967,981 + -0.9
2,967,981 + -0.7
2,967,982 - -2.5
2,967,982 - -1.4
2,967,982 - +1.8
2,967,982 - +1.6
2,967,982 - -1.8
2,967,982 - -2.3
2,967,982 - +2.6
2,967,982 - -1.4
2,967,982 - +1.2
2,967,982 - +2.5
2,967,982 - -1.7
2,967,982 - -1.0
2,967,982 - +1.5
2,967,982 - +1.3
2,967,982 - +0.8
2,967,982 - -1.0
2,967,982 - +0.0
2,967,982 - -0.4
2,967,982 - -1.0
2,967,982 - -1.2
2,967,982 - -1.4
2,967,982 - +1.5
2,967,982 - +0.5
2,967,985 + -1.8
2,967,985 + -2.2
2,967,985 + +1.6
2,967,985 + -0.0
2,967,985 + +1.0
2,967,985 + +1.6
2,967,985 + +1.2
2,967,985 + +3.0
2,967,985 + -1.0
2,967,986 - +1.5
2,967,986 - +0.4
2,967,986 - -0.7
2,968,030 + -0.7
2,968,054 + +0.8
2,968,054 + +1.3
2,968,055 - +1.4
2,968,055 - +0.2
2,968,055 - +0.3
2,968,055 - +2.8
2,968,055 - -2.4
2,968,055 - -1.4
2,968,056 + +0.8
2,968,056 + -1.5
2,968,056 + +0.9
2,968,056 + +1.9
2,968,056 + -0.7
2,968,056 + +1.0
2,968,056 + -0.4
2,968,056 + +2.2
2,968,056 + +0.1
2,968,057 - +2.0
2,968,057 - -2.5
2,968,057 - -1.0
2,968,057 - -3.0
2,968,057 - -2.4
2,968,057 - -1.2
2,968,057 - +1.5
2,968,057 - -0.3
2,968,067 + -0.7
2,968,081 + +0.6
2,968,118 + -1.0
2,968,197 + -2.1
2,968,198 - +1.4
2,968,226 + -1.0
2,968,227 - +1.8
2,968,227 - -2.2
2,968,227 - -1.0
2,968,261 + +1.6
2,968,262 - -2.7
2,968,262 - -0.7
2,968,264 - +0.5
2,968,264 - +0.6
2,968,264 - -1.2
2,968,264 - -1.2
2,968,264 - +1.9
2,968,264 - +1.8
2,968,264 - -1.2
2,968,283 + +2.6
2,968,284 - -0.7
2,968,296 - -2.2
2,968,322 - +0.2
2,968,354 - -1.4
2,968,357 - -0.1
2,968,357 - +0.3
2,968,370 + -2.1
2,968,370 + -1.2
2,968,371 - +2.0
2,968,389 + -1.0
2,968,427 + +0.2
2,968,428 - +2.9
2,968,428 - -0.7
2,968,514 + DDA3937_RS13005 0.15 -2.4
2,968,514 + DDA3937_RS13005 0.15 +2.4
2,968,515 - DDA3937_RS13005 0.15 -0.4
2,968,515 - DDA3937_RS13005 0.15 -2.0
2,968,515 - DDA3937_RS13005 0.15 +2.4
2,968,575 + DDA3937_RS13005 0.19 +1.9
2,968,575 + DDA3937_RS13005 0.19 +2.2
2,968,575 + DDA3937_RS13005 0.19 -1.0
2,968,575 + DDA3937_RS13005 0.19 -0.2
2,968,575 + DDA3937_RS13005 0.19 -1.1
2,968,576 - DDA3937_RS13005 0.19 +1.4
2,968,632 - DDA3937_RS13005 0.23 -2.5
2,968,688 + DDA3937_RS13005 0.26 -0.4
2,968,688 + DDA3937_RS13005 0.26 -1.8
2,968,688 + DDA3937_RS13005 0.26 -3.0
2,968,688 + DDA3937_RS13005 0.26 -1.4
2,968,688 + DDA3937_RS13005 0.26 -1.8
2,968,689 - +0.6
2,968,689 - DDA3937_RS13005 0.26 +0.0
2,968,689 - DDA3937_RS13005 0.26 +1.6
2,968,692 + DDA3937_RS13005 0.27 -3.6
2,968,692 + DDA3937_RS13005 0.27 +1.0
2,968,692 + DDA3937_RS13005 0.27 +0.2
2,968,692 + -0.4
2,968,693 - DDA3937_RS13005 0.27 -2.2
2,968,693 - DDA3937_RS13005 0.27 -1.2
2,968,693 - DDA3937_RS13005 0.27 -1.4
2,968,732 + DDA3937_RS13005 0.29 +0.8
2,968,732 + DDA3937_RS13005 0.29 +2.5
2,968,732 + DDA3937_RS13005 0.29 +2.4
2,968,732 + DDA3937_RS13005 0.29 -0.4
2,968,732 + DDA3937_RS13005 0.29 -2.1
2,968,732 + DDA3937_RS13005 0.29 +0.8
2,968,733 - DDA3937_RS13005 0.29 -0.7
2,968,733 - DDA3937_RS13005 0.29 +2.5
2,968,733 - DDA3937_RS13005 0.29 +4.3
2,968,733 - DDA3937_RS13005 0.29 -1.3
2,968,733 - DDA3937_RS13005 0.29 -1.4
2,968,733 - DDA3937_RS13005 0.29 -1.8
2,968,805 + DDA3937_RS13005 0.34 -2.8
2,968,826 + DDA3937_RS13005 0.36 +1.5
2,968,826 + DDA3937_RS13005 0.36 -2.8
2,968,827 - DDA3937_RS13005 0.36 +1.0
2,968,841 + DDA3937_RS13005 0.37 -1.8
2,968,868 + DDA3937_RS13005 0.38 +0.0
2,968,869 - DDA3937_RS13005 0.38 +0.2
2,968,872 - DDA3937_RS13005 0.39 -1.7
2,968,923 + DDA3937_RS13005 0.42 -2.6
2,968,923 + DDA3937_RS13005 0.42 +0.6
2,968,923 + DDA3937_RS13005 0.42 +2.0
2,968,923 + +0.6
2,968,923 + DDA3937_RS13005 0.42 +0.0
2,968,924 - DDA3937_RS13005 0.42 -0.1
2,968,924 - DDA3937_RS13005 0.42 +2.7

Or see this region's nucleotide sequence