Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12665

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,879,579	+				-0.4
2,879,607	-		DDA3937_RS12655	0.48	+1.3
2,879,607	-		DDA3937_RS12655	0.48	-2.2
2,879,696	+		DDA3937_RS12655	0.58	-1.3
2,879,744	+		DDA3937_RS12655	0.63	-1.4
2,879,745	-		DDA3937_RS12655	0.63	+0.9
2,879,745	-		DDA3937_RS12655	0.63	+0.6
2,879,748	-		DDA3937_RS12655	0.63	-0.9
2,879,748	-		DDA3937_RS12655	0.63	-2.1
2,879,750	-		DDA3937_RS12655	0.64	+2.0
2,879,750	-		DDA3937_RS12655	0.64	-0.7
2,879,756	+		DDA3937_RS12655	0.64	+1.6
2,879,757	-		DDA3937_RS12655	0.64	-1.2
2,879,804	+		DDA3937_RS12655	0.69	-1.9
2,879,804	+		DDA3937_RS12655	0.69	-0.3
2,879,805	-		DDA3937_RS12655	0.70	+0.0
2,879,805	-		DDA3937_RS12655	0.70	-2.3
2,879,809	+		DDA3937_RS12655	0.70	-0.9
2,879,810	-		DDA3937_RS12655	0.70	-0.7
2,879,810	-		DDA3937_RS12655	0.70	-2.4
2,879,810	-		DDA3937_RS12655	0.70	-0.7
2,879,810	-		DDA3937_RS12655	0.70	+0.0
2,879,810	-		DDA3937_RS12655	0.70	-0.3
2,879,810	-		DDA3937_RS12655	0.70	-2.0
2,879,813	+		DDA3937_RS12655	0.70	-2.2
2,879,837	+		DDA3937_RS12655	0.73	-1.7
2,879,838	-		DDA3937_RS12655	0.73	+1.7
2,879,843	+		DDA3937_RS12655	0.74	-0.7
2,879,846	+		DDA3937_RS12655	0.74	-2.0
2,879,847	-		DDA3937_RS12655	0.74	-0.6
2,879,847	-		DDA3937_RS12655	0.74	+0.3
2,879,847	-		DDA3937_RS12655	0.74	-1.7
2,879,847	-		DDA3937_RS12655	0.74	+1.6
2,879,889	+		DDA3937_RS12655	0.79	-1.6
2,879,889	+		DDA3937_RS12655	0.79	-1.4
2,879,897	+		DDA3937_RS12655	0.80	-2.7
2,879,898	-		DDA3937_RS12655	0.80	+2.6
2,879,902	+		DDA3937_RS12655	0.80	+0.6
2,879,902	+		DDA3937_RS12655	0.80	-1.2
2,879,902	+		DDA3937_RS12655	0.80	-0.1
2,879,970	-		DDA3937_RS12655	0.88	-2.2
2,880,023	+				+1.0
2,880,024	-				+2.2
2,880,028	-				+2.1
2,880,055	-				-0.0
2,880,087	-				-2.7
2,880,102	-				+0.0
2,880,102	-				-1.0
2,880,111	+				+1.8
2,880,134	+				-1.4
2,880,134	+				-1.0
2,880,134	+				+0.9
2,880,134	+				-1.6
2,880,134	+				+0.3
2,880,135	-				+0.3
2,880,211	-		DDA3937_RS12660	0.22	-2.2
2,880,211	-		DDA3937_RS12660	0.22	-1.0
2,880,476	+		DDA3937_RS12660	0.79	-1.5
2,880,477	-		DDA3937_RS12660	0.79	+0.9
2,880,477	-		DDA3937_RS12660	0.79	-1.9
2,880,584	-				-1.6
2,880,654	+				-0.7
2,880,655	-				-2.9
2,880,777	-		DDA3937_RS12665	0.18	+2.2
2,880,777	-		DDA3937_RS12665	0.18	-2.2
2,880,777	-		DDA3937_RS12665	0.18	+3.1
2,880,899	+		DDA3937_RS12665	0.28	-2.5
2,880,900	-		DDA3937_RS12665	0.28	+0.7
2,880,911	-		DDA3937_RS12665	0.29	-3.0
2,880,931	+		DDA3937_RS12665	0.31	-2.1
2,880,931	+		DDA3937_RS12665	0.31	-1.4
2,880,932	-		DDA3937_RS12665	0.31	-3.6
2,880,932	-		DDA3937_RS12665	0.31	+0.4
2,880,969	+		DDA3937_RS12665	0.34	-2.2
2,881,013	+		DDA3937_RS12665	0.38	-2.0
2,881,013	+		DDA3937_RS12665	0.38	-1.7
2,881,013	+				+0.0
2,881,014	-		DDA3937_RS12665	0.38	-0.1
2,881,014	-		DDA3937_RS12665	0.38	-1.6
2,881,030	+		DDA3937_RS12665	0.39	+1.7
2,881,030	+		DDA3937_RS12665	0.39	-1.4
2,881,030	+		DDA3937_RS12665	0.39	-0.4
2,881,030	+		DDA3937_RS12665	0.39	-0.9
2,881,030	+		DDA3937_RS12665	0.39	+2.9
2,881,030	+		DDA3937_RS12665	0.39	-0.2
2,881,031	-		DDA3937_RS12665	0.39	-1.9
2,881,043	+		DDA3937_RS12665	0.40	-1.9
2,881,043	+		DDA3937_RS12665	0.40	-1.2
2,881,043	+		DDA3937_RS12665	0.40	+2.1
2,881,044	-		DDA3937_RS12665	0.40	-1.2
2,881,044	-				-0.7
2,881,083	+		DDA3937_RS12665	0.44	+1.2
2,881,170	-		DDA3937_RS12665	0.51	+2.3
2,881,194	+		DDA3937_RS12665	0.53	-1.7
2,881,198	-		DDA3937_RS12665	0.54	+0.3
2,881,251	+		DDA3937_RS12665	0.58	+2.1
2,881,251	+		DDA3937_RS12665	0.58	-3.1
2,881,251	+		DDA3937_RS12665	0.58	-2.2
2,881,255	-		DDA3937_RS12665	0.58	+0.0
2,881,467	+		DDA3937_RS12665	0.76	-3.0
2,881,467	+				-1.0
2,881,467	+		DDA3937_RS12665	0.76	+1.2
2,881,467	+		DDA3937_RS12665	0.76	-3.1
2,881,468	-		DDA3937_RS12665	0.77	-1.0
2,881,468	-		DDA3937_RS12665	0.77	+0.0
2,881,468	-		DDA3937_RS12665	0.77	+3.0
2,881,562	-		DDA3937_RS12665	0.85	-3.0
2,881,604	-		DDA3937_RS12665	0.88	-3.0
2,881,648	-				-1.1
2,881,734	+				-2.3
2,881,763	-				-1.0
2,881,767	+				-0.6
2,881,866	+		DDA3937_RS12670	0.14	-1.2
2,881,866	+		DDA3937_RS12670	0.14	+1.1
2,881,867	-		DDA3937_RS12670	0.15	-1.2
2,881,867	-		DDA3937_RS12670	0.15	+0.3
2,881,885	+		DDA3937_RS12670	0.17	+1.0
2,881,955	-		DDA3937_RS12670	0.24	-3.1
2,882,022	-		DDA3937_RS12670	0.31	-0.3
2,882,059	+		DDA3937_RS12670	0.35	-1.0
2,882,196	-		DDA3937_RS12670	0.50	-2.9
2,882,250	-		DDA3937_RS12670	0.56	-0.3
2,882,261	-		DDA3937_RS12670	0.57	+1.4
2,882,261	-		DDA3937_RS12670	0.57	-1.7
2,882,339	-		DDA3937_RS12670	0.66	-2.8
2,882,352	-		DDA3937_RS12670	0.67	-0.4
2,882,399	-		DDA3937_RS12670	0.72	-2.8
2,882,399	-		DDA3937_RS12670	0.72	+0.8
2,882,437	+		DDA3937_RS12670	0.76	-1.2
2,882,438	-		DDA3937_RS12670	0.77	+0.9
2,882,475	-		DDA3937_RS12670	0.81	-0.8
2,882,567	+				+0.0
2,882,568	-				+2.5
2,882,579	+				+1.0
2,882,580	-				-0.4
2,882,684	+				-0.0
2,882,684	+				-2.6
2,882,685	-				+2.1