Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12625

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,872,266	+		DDA3937_RS12620	0.49	+1.6
2,872,267	-				+0.6
2,872,267	-		DDA3937_RS12620	0.49	+0.6
2,872,267	-				-0.7
2,872,282	-				+1.6
2,872,571	+		DDA3937_RS12620	0.78	+1.9
2,872,694	+				-0.7
2,872,783	-				+1.2
2,872,811	+				-1.4
2,872,812	-				+0.6
2,872,812	-				-2.2
2,872,813	+				+1.0
2,872,814	-				+1.2
2,872,814	-				+0.0
2,872,896	+				+0.6
2,872,896	+				-1.7
2,872,896	+				+0.2
2,872,897	-				-1.0
2,872,947	+				-1.2
2,872,947	+				-0.1
2,872,948	-				+2.0
2,872,948	-				+1.4
2,872,948	-				+0.1
2,872,948	-				+0.7
2,872,948	-				-0.1
2,872,948	-				+4.1
2,872,948	-				-2.0
2,872,948	-				-1.0
2,872,974	+				-2.1
2,872,974	+				-2.0
2,872,974	+				-1.1
2,872,974	+				-1.9
2,872,974	+				-0.9
2,872,974	+				-0.6
2,872,974	+				-0.1
2,872,974	+				+0.7
2,872,975	-				-1.6
2,872,978	+				-2.6
2,873,022	+				-2.6
2,873,023	-				-0.4
2,873,024	+				-3.3
2,873,031	+				-2.8
2,873,032	-				+1.7
2,873,044	-				-1.2
2,873,054	+				-0.4
2,873,067	-				+1.8
2,873,165	+				+0.5
2,873,165	+				+2.3
2,873,165	+				+0.1
2,873,166	-				+0.6
2,873,166	-				-0.7
2,873,200	+				-1.7
2,873,211	+				-2.6
2,873,211	+				+4.2
2,873,211	+				+0.2
2,873,219	+				+1.6
2,873,219	+				-0.1
2,873,220	-				+0.7
2,873,224	+				+0.6
2,873,224	+				+2.0
2,873,224	+				-1.9
2,873,225	-				+0.0
2,873,225	-				+0.9
2,873,225	-				+1.1
2,873,247	+				+1.4
2,873,247	+				-2.0
2,873,247	+				-1.7
2,873,247	+				-0.2
2,873,247	+				-1.4
2,873,247	+				-1.0
2,873,247	+				-3.2
2,873,247	+				-2.6
2,873,248	-				+0.0
2,873,248	-				-1.6
2,873,248	-				+2.3
2,873,248	-				-0.8
2,873,248	-				+3.1
2,873,248	-				-1.2
2,873,252	+				-3.1
2,873,252	+				+0.7
2,873,252	+				+0.3
2,873,253	-				-2.3
2,873,253	-				-1.4
2,873,350	+		DDA3937_RS12625	0.12	+0.9
2,873,350	+		DDA3937_RS12625	0.12	-1.3
2,873,350	+		DDA3937_RS12625	0.12	-0.3
2,873,350	+		DDA3937_RS12625	0.12	-2.4
2,873,351	-		DDA3937_RS12625	0.12	-0.4
2,873,360	+		DDA3937_RS12625	0.13	+1.1
2,873,360	+		DDA3937_RS12625	0.13	-2.2
2,873,360	+		DDA3937_RS12625	0.13	-1.0
2,873,360	+		DDA3937_RS12625	0.13	+0.5
2,873,361	-		DDA3937_RS12625	0.13	+0.8
2,873,361	-		DDA3937_RS12625	0.13	+1.5
2,873,361	-		DDA3937_RS12625	0.13	-2.2
2,873,364	-		DDA3937_RS12625	0.13	-1.4
2,873,364	-		DDA3937_RS12625	0.13	+0.8
2,873,364	-		DDA3937_RS12625	0.13	-2.6
2,873,364	-				+2.0
2,873,364	-		DDA3937_RS12625	0.13	-2.3
2,873,379	-		DDA3937_RS12625	0.14	-1.3
2,873,395	+		DDA3937_RS12625	0.16	+2.0
2,873,395	+		DDA3937_RS12625	0.16	+1.5
2,873,396	-		DDA3937_RS12625	0.16	-3.0
2,873,397	+		DDA3937_RS12625	0.16	-0.4
2,873,397	+		DDA3937_RS12625	0.16	+0.7
2,873,398	-		DDA3937_RS12625	0.16	-0.8
2,873,433	-		DDA3937_RS12625	0.19	-1.3
2,873,433	-		DDA3937_RS12625	0.19	-1.2
2,873,451	-		DDA3937_RS12625	0.21	-2.0
2,873,493	+		DDA3937_RS12625	0.24	+2.6
2,873,493	+		DDA3937_RS12625	0.24	-1.5
2,873,493	+		DDA3937_RS12625	0.24	-1.0
2,873,494	-		DDA3937_RS12625	0.24	-2.5
2,873,494	-		DDA3937_RS12625	0.24	-2.6
2,873,570	-		DDA3937_RS12625	0.31	+2.8
2,873,570	-		DDA3937_RS12625	0.31	-2.0
2,873,570	-		DDA3937_RS12625	0.31	+0.6
2,873,611	+		DDA3937_RS12625	0.34	+0.6
2,873,611	+		DDA3937_RS12625	0.34	-2.1
2,873,611	+		DDA3937_RS12625	0.34	+1.5
2,873,612	-		DDA3937_RS12625	0.34	+1.1
2,873,620	+		DDA3937_RS12625	0.35	+2.2
2,873,620	+		DDA3937_RS12625	0.35	-0.8
2,873,620	+		DDA3937_RS12625	0.35	+0.6
2,873,620	+		DDA3937_RS12625	0.35	+0.6
2,873,620	+		DDA3937_RS12625	0.35	-0.2
2,873,621	-		DDA3937_RS12625	0.35	-2.6
2,873,621	-		DDA3937_RS12625	0.35	-2.0
2,873,621	-		DDA3937_RS12625	0.35	+0.5
2,873,621	-		DDA3937_RS12625	0.35	+0.7
2,873,621	-		DDA3937_RS12625	0.35	+0.6
2,873,621	-		DDA3937_RS12625	0.35	+1.3
2,873,621	-		DDA3937_RS12625	0.35	-3.4
2,873,621	-		DDA3937_RS12625	0.35	-1.6
2,873,621	-		DDA3937_RS12625	0.35	-2.4
2,873,860	-		DDA3937_RS12625	0.56	-1.3
2,873,860	-		DDA3937_RS12625	0.56	-0.6
2,873,860	-		DDA3937_RS12625	0.56	+0.5
2,873,884	-		DDA3937_RS12625	0.58	-2.6
2,873,913	+		DDA3937_RS12625	0.60	+1.8
2,873,913	+		DDA3937_RS12625	0.60	+0.3
2,873,913	+		DDA3937_RS12625	0.60	+3.5
2,873,930	+		DDA3937_RS12625	0.62	-0.9
2,873,930	+		DDA3937_RS12625	0.62	-1.2
2,873,976	-		DDA3937_RS12625	0.66	-0.5
2,874,018	+		DDA3937_RS12625	0.69	-0.6
2,874,018	+		DDA3937_RS12625	0.69	+2.6
2,874,019	-		DDA3937_RS12625	0.70	-0.2
2,874,019	-		DDA3937_RS12625	0.70	+2.1
2,874,019	-		DDA3937_RS12625	0.70	+0.8
2,874,044	+		DDA3937_RS12625	0.72	+2.1
2,874,044	+		DDA3937_RS12625	0.72	-0.7
2,874,050	+		DDA3937_RS12625	0.72	+0.2
2,874,070	+		DDA3937_RS12625	0.74	-0.7
2,874,070	+		DDA3937_RS12625	0.74	-1.8
2,874,070	+		DDA3937_RS12625	0.74	-2.6
2,874,070	+		DDA3937_RS12625	0.74	-3.1
2,874,070	+		DDA3937_RS12625	0.74	+1.4
2,874,071	-		DDA3937_RS12625	0.74	-0.4
2,874,071	-		DDA3937_RS12625	0.74	-2.4
2,874,071	-		DDA3937_RS12625	0.74	+1.6
2,874,071	-		DDA3937_RS12625	0.74	-2.1
2,874,071	-		DDA3937_RS12625	0.74	+0.0
2,874,071	-		DDA3937_RS12625	0.74	-0.7
2,874,071	-		DDA3937_RS12625	0.74	-1.2
2,874,071	-		DDA3937_RS12625	0.74	-2.8
2,874,071	-		DDA3937_RS12625	0.74	+2.0
2,874,130	+		DDA3937_RS12625	0.79	-0.9
2,874,130	+		DDA3937_RS12625	0.79	-1.1
2,874,130	+		DDA3937_RS12625	0.79	-2.6
2,874,169	+		DDA3937_RS12625	0.82	+0.5
2,874,169	+		DDA3937_RS12625	0.82	+1.0
2,874,169	+		DDA3937_RS12625	0.82	-3.4
2,874,169	+		DDA3937_RS12625	0.82	-1.1
2,874,170	-		DDA3937_RS12625	0.83	-0.4
2,874,170	-		DDA3937_RS12625	0.83	+0.1
2,874,170	-		DDA3937_RS12625	0.83	-1.7
2,874,177	+		DDA3937_RS12625	0.83	+0.6
2,874,177	+		DDA3937_RS12625	0.83	+1.1
2,874,178	-		DDA3937_RS12625	0.83	-1.1
2,874,193	+				+0.6
2,874,194	-		DDA3937_RS12625	0.85	-0.6
2,874,252	+		DDA3937_RS12625	0.90	-1.2
2,874,252	+		DDA3937_RS12625	0.90	-1.2
2,874,252	+		DDA3937_RS12625	0.90	-0.6
2,874,252	+		DDA3937_RS12625	0.90	+0.7
2,874,253	-		DDA3937_RS12625	0.90	-1.2
2,874,265	+				-0.4
2,874,268	+				-1.8
2,874,269	-				+1.2
2,874,323	+				-2.4
2,874,323	+				-1.6
2,874,323	+				+1.2
2,874,324	-				+1.4
2,874,324	-				-1.0
2,874,324	-				+0.4
2,874,324	-				-2.5
2,874,326	+				-0.3
2,874,326	+				+0.9
2,874,326	+				+3.1
2,874,327	-				-0.7
2,874,344	+				+2.0
2,874,345	-				+1.6
2,874,370	+				+0.0
2,874,370	+				-0.5
2,874,371	-				-0.7
2,874,470	-				+0.6
2,875,194	-				-2.1
2,875,215	+				+0.8
2,875,216	-				-1.4
2,875,337	+				-0.7
2,875,337	+				-2.9
2,875,338	-				-0.2
2,875,338	-				+0.6
2,875,364	+				+1.4
2,875,364	+				-2.0
2,875,365	-				-2.7
2,875,365	-				-0.7
2,875,365	-				-1.3
2,875,365	-				-0.3