Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12285

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,791,662	+				-0.2
2,791,662	+				+0.1
2,791,663	-				+1.4
2,791,681	+				-1.6
2,791,681	-				-1.0
2,791,940	+		DDA3937_RS12275	0.48	-2.1
2,791,941	-		DDA3937_RS12275	0.48	+1.6
2,791,941	-		DDA3937_RS12275	0.48	+2.3
2,791,941	-		DDA3937_RS12275	0.48	-0.0
2,791,973	+		DDA3937_RS12275	0.53	+0.9
2,791,973	+		DDA3937_RS12275	0.53	-3.2
2,791,973	+		DDA3937_RS12275	0.53	-1.9
2,791,973	+		DDA3937_RS12275	0.53	+1.4
2,791,973	+		DDA3937_RS12275	0.53	-1.9
2,791,973	+		DDA3937_RS12275	0.53	-1.0
2,791,974	-		DDA3937_RS12275	0.53	-2.5
2,792,117	+		DDA3937_RS12275	0.77	+0.6
2,792,117	+		DDA3937_RS12275	0.77	-2.3
2,792,117	+		DDA3937_RS12275	0.77	+0.2
2,792,117	+		DDA3937_RS12275	0.77	-3.1
2,792,118	-		DDA3937_RS12275	0.77	-1.6
2,792,225	-				-1.8
2,792,262	+				-2.8
2,792,492	-		DDA3937_RS12280	0.47	-0.5
2,792,529	+				+1.8
2,792,647	+				-0.8
2,792,647	+				+2.1
2,792,647	+				+0.1
2,792,655	+				-1.0
2,792,655	+				+1.7
2,792,656	-				+1.8
2,792,869	+				+0.3
2,792,870	-				-0.7
2,792,870	-				-1.2
2,792,870	-				+0.6
2,792,871	+				-2.3
2,792,871	+				+0.8
2,792,871	+				-1.9
2,792,871	+				-1.0
2,792,871	+				+4.7
2,792,872	-				+0.7
2,792,872	-				+2.0
2,792,948	+		DDA3937_RS12285	0.11	-1.2
2,792,949	-		DDA3937_RS12285	0.11	+0.0
2,793,032	-		DDA3937_RS12285	0.15	+1.6
2,793,107	+		DDA3937_RS12285	0.17	-1.4
2,793,213	+		DDA3937_RS12285	0.21	-1.8
2,793,214	-		DDA3937_RS12285	0.22	+2.1
2,793,229	-		DDA3937_RS12285	0.22	-1.2
2,793,229	-		DDA3937_RS12285	0.22	-1.2
2,793,728	+		DDA3937_RS12285	0.41	-1.0
2,793,964	+		DDA3937_RS12285	0.50	-2.5
2,794,020	+		DDA3937_RS12285	0.52	-0.0
2,794,020	+		DDA3937_RS12285	0.52	-2.4
2,794,020	+		DDA3937_RS12285	0.52	+1.3
2,794,020	+		DDA3937_RS12285	0.52	+2.7
2,794,020	+		DDA3937_RS12285	0.52	+1.6
2,794,020	+		DDA3937_RS12285	0.52	-2.4
2,794,020	+		DDA3937_RS12285	0.52	+0.2
2,794,021	-		DDA3937_RS12285	0.52	-2.3
2,794,021	-		DDA3937_RS12285	0.52	-1.4
2,794,021	-		DDA3937_RS12285	0.52	+2.4
2,794,149	-		DDA3937_RS12285	0.57	+1.9
2,794,151	+		DDA3937_RS12285	0.57	+0.9
2,794,152	-		DDA3937_RS12285	0.58	-1.8
2,794,354	+		DDA3937_RS12285	0.65	+1.3
2,794,354	+		DDA3937_RS12285	0.65	-1.2
2,794,354	+		DDA3937_RS12285	0.65	-1.0
2,794,355	-		DDA3937_RS12285	0.65	+2.6
2,794,401	+		DDA3937_RS12285	0.67	+2.6
2,794,401	+		DDA3937_RS12285	0.67	-1.4
2,794,402	-		DDA3937_RS12285	0.67	+1.9
2,794,402	-		DDA3937_RS12285	0.67	-0.4
2,794,402	-		DDA3937_RS12285	0.67	+1.4
2,794,467	+		DDA3937_RS12285	0.70	+1.2
2,794,467	+		DDA3937_RS12285	0.70	-2.1
2,794,467	+		DDA3937_RS12285	0.70	-0.8
2,794,468	-		DDA3937_RS12285	0.70	+1.1
2,794,468	-		DDA3937_RS12285	0.70	-1.2
2,794,468	-		DDA3937_RS12285	0.70	+0.3
2,794,468	-				+4.1
2,794,468	-		DDA3937_RS12285	0.70	-1.8
2,794,468	-		DDA3937_RS12285	0.70	-0.4
2,794,468	-		DDA3937_RS12285	0.70	+0.2
2,794,558	+		DDA3937_RS12285	0.73	+0.9
2,794,558	+		DDA3937_RS12285	0.73	+0.1
2,794,558	+		DDA3937_RS12285	0.73	+0.7
2,794,558	+		DDA3937_RS12285	0.73	+0.1
2,794,559	-		DDA3937_RS12285	0.73	+1.6
2,794,766	+		DDA3937_RS12285	0.81	-2.0
2,794,766	+		DDA3937_RS12285	0.81	-2.0
2,794,767	-		DDA3937_RS12285	0.81	-1.2
2,794,767	-		DDA3937_RS12285	0.81	-1.6
2,794,850	-		DDA3937_RS12285	0.84	-1.2
2,794,850	-		DDA3937_RS12285	0.84	+0.9
2,794,865	+		DDA3937_RS12285	0.85	-1.0
2,794,865	+		DDA3937_RS12285	0.85	-1.9
2,794,866	-		DDA3937_RS12285	0.85	-0.2
2,794,866	-		DDA3937_RS12285	0.85	-1.2
2,794,866	-				-1.0
2,794,866	-		DDA3937_RS12285	0.85	+0.6
2,794,866	-		DDA3937_RS12285	0.85	+2.2
2,794,924	+		DDA3937_RS12285	0.87	+2.2
2,794,925	-		DDA3937_RS12285	0.87	-0.4
2,794,925	-		DDA3937_RS12285	0.87	-1.3
2,795,139	+				-0.9
2,795,262	+				+1.8
2,795,263	-				-2.5
2,795,290	+				-0.0
2,795,290	+				+3.6
2,795,290	+				-2.8
2,795,291	-				+0.8
2,795,322	-				-1.0
2,795,405	+				-2.4
2,795,406	-				+1.5
2,795,486	+				+1.2
2,795,486	+				-2.4
2,795,486	+				-0.5
2,795,486	+				+2.3
2,795,486	+				-1.4
2,795,487	-				+0.7
2,795,487	-				-1.6
2,795,487	-				+1.5
2,795,498	+				-2.2
2,795,508	+				+1.3
2,795,519	+				+0.4
2,795,520	-				+0.5
2,795,520	-				+0.1
2,795,576	-				+0.0
2,795,652	+				-0.8
2,795,652	+				-0.2
2,795,653	-				-1.1
2,795,653	-				+1.3
2,795,653	-				+1.8
2,795,653	-				+1.8
2,795,722	-		DDA3937_RS12290	0.10	-1.9
2,795,724	+		DDA3937_RS12290	0.10	-2.8
2,795,724	+		DDA3937_RS12290	0.10	+0.7
2,795,724	+		DDA3937_RS12290	0.10	-0.6
2,795,725	-		DDA3937_RS12290	0.10	+5.2
2,795,725	-		DDA3937_RS12290	0.10	+2.4
2,795,725	-		DDA3937_RS12290	0.10	+1.1
2,795,725	-		DDA3937_RS12290	0.10	-1.5
2,795,742	+		DDA3937_RS12290	0.12	+1.0
2,795,743	-		DDA3937_RS12290	0.12	+2.4
2,795,776	-		DDA3937_RS12290	0.14	-0.2
2,795,780	+		DDA3937_RS12290	0.14	-0.8
2,795,780	+		DDA3937_RS12290	0.14	+1.5
2,795,781	-		DDA3937_RS12290	0.14	-1.0
2,795,781	-		DDA3937_RS12290	0.14	-2.2
2,795,839	+		DDA3937_RS12290	0.18	-0.5
2,795,893	+		DDA3937_RS12290	0.21	+1.1
2,795,893	+		DDA3937_RS12290	0.21	-3.7
2,795,894	-		DDA3937_RS12290	0.21	-1.3
2,795,894	-		DDA3937_RS12290	0.21	+0.5
2,795,894	-		DDA3937_RS12290	0.21	+3.7
2,796,010	+		DDA3937_RS12290	0.29	-3.6
2,796,076	+		DDA3937_RS12290	0.33	+3.2
2,796,076	+		DDA3937_RS12290	0.33	+0.4