Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11990

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,727,387	-		DDA3937_RS11985	0.71	+1.5
2,727,388	+		DDA3937_RS11985	0.71	+2.0
2,727,388	+		DDA3937_RS11985	0.71	-1.3
2,727,388	+		DDA3937_RS11985	0.71	-0.5
2,727,389	-		DDA3937_RS11985	0.71	-4.5
2,727,389	-		DDA3937_RS11985	0.71	-1.3
2,727,389	-		DDA3937_RS11985	0.71	+0.8
2,727,442	+		DDA3937_RS11985	0.73	+1.0
2,727,442	+		DDA3937_RS11985	0.73	-1.7
2,727,442	+		DDA3937_RS11985	0.73	+2.0
2,727,442	+				-0.1
2,727,442	+		DDA3937_RS11985	0.73	-1.2
2,727,442	+		DDA3937_RS11985	0.73	-3.0
2,727,442	+		DDA3937_RS11985	0.73	-0.5
2,727,442	+		DDA3937_RS11985	0.73	+0.8
2,727,443	-		DDA3937_RS11985	0.73	+0.5
2,727,443	-		DDA3937_RS11985	0.73	-1.3
2,727,443	-		DDA3937_RS11985	0.73	+1.8
2,727,443	-		DDA3937_RS11985	0.73	+1.8
2,727,481	+		DDA3937_RS11985	0.74	-2.2
2,727,482	-		DDA3937_RS11985	0.74	+1.2
2,727,571	+		DDA3937_RS11985	0.78	-3.0
2,727,571	+		DDA3937_RS11985	0.78	-0.5
2,727,572	-		DDA3937_RS11985	0.78	+0.2
2,727,572	-		DDA3937_RS11985	0.78	-2.1
2,727,670	+		DDA3937_RS11985	0.82	-2.0
2,727,670	+		DDA3937_RS11985	0.82	+0.8
2,727,671	-		DDA3937_RS11985	0.82	+0.1
2,727,671	-		DDA3937_RS11985	0.82	+1.6
2,727,671	-		DDA3937_RS11985	0.82	+0.8
2,727,671	-		DDA3937_RS11985	0.82	-2.7
2,727,671	-		DDA3937_RS11985	0.82	+2.2
2,727,797	+		DDA3937_RS11985	0.86	-0.4
2,727,958	+				+1.5
2,727,959	-				+1.0
2,727,960	+				+1.1
2,728,166	+				+0.7
2,728,218	+				-1.3
2,728,218	+				+0.7
2,728,218	+				+1.0
2,728,218	+				-2.6
2,728,218	+				-3.0
2,728,219	-				+2.8
2,728,223	+				-0.5
2,728,243	+				+0.8
2,728,243	+				+1.1
2,728,244	-				-2.0
2,728,244	-				-1.1
2,728,244	-				-1.1
2,728,244	-				+0.5
2,728,244	-				-1.3
2,728,277	-				-1.1
2,728,277	-				-2.4
2,728,321	+				-1.5
2,728,321	+				+1.3
2,728,321	+				-1.7
2,728,321	+				+0.7
2,728,321	+				-0.3
2,728,321	+				-1.0
2,728,322	-				-1.3
2,728,322	-				+0.5
2,728,322	-				-1.5
2,728,394	-				+1.4
2,728,394	-				+0.9
2,728,396	+				-0.5
2,728,397	-				+1.5
2,728,559	+		DDA3937_RS11990	0.20	-1.1
2,728,559	+		DDA3937_RS11990	0.20	+0.5
2,728,559	+		DDA3937_RS11990	0.20	-1.8
2,728,559	+		DDA3937_RS11990	0.20	-3.7
2,728,559	+		DDA3937_RS11990	0.20	-1.1
2,728,560	-		DDA3937_RS11990	0.20	-2.3
2,728,698	+		DDA3937_RS11990	0.30	-0.8
2,728,715	+		DDA3937_RS11990	0.31	-1.0
2,728,716	-		DDA3937_RS11990	0.31	-1.5
2,728,737	+		DDA3937_RS11990	0.33	+1.0
2,728,997	+		DDA3937_RS11990	0.51	-4.0
2,729,231	+		DDA3937_RS11990	0.67	-1.8
2,729,231	+		DDA3937_RS11990	0.67	-2.1
2,729,231	+				-1.1
2,729,254	+		DDA3937_RS11990	0.68	-0.9
2,729,335	-		DDA3937_RS11990	0.74	+0.2
2,729,335	-		DDA3937_RS11990	0.74	-2.5
2,729,695	+				+3.0
2,729,695	+				+2.4
2,729,695	+				+0.2
2,729,695	+				+0.3
2,729,695	+				-2.6
2,729,696	-				-3.3
2,729,696	-				+1.2
2,729,764	-				-2.8
2,729,764	-				-0.2
2,729,764	-				-1.3
2,729,764	-				-0.8
2,729,764	-				-3.0
2,729,764	-				+0.8
2,729,766	-				+1.5
2,729,775	-				-2.7
2,729,891	+				+4.6
2,729,892	-				-3.0
2,729,899	+				-1.5
2,729,899	+				+0.2
2,729,990	+				-0.7
2,730,031	+				-1.5
2,730,031	+				-1.5
2,730,031	+				-1.7
2,730,031	+				-3.1
2,730,031	+				-0.5
2,730,050	+				+2.4
2,730,051	-				+0.9
2,730,051	-				-2.8
2,730,051	-				+0.2
2,730,080	+				-0.1
2,730,080	+				-1.3
2,730,080	+				+0.5
2,730,080	+				-0.8
2,730,081	-				+0.5
2,730,081	-				-0.1
2,730,081	-				+0.8
2,730,081	-				-0.7
2,730,108	+		DDA3937_RS11995	0.14	+2.6
2,730,109	-		DDA3937_RS11995	0.15	+1.2
2,730,119	+		DDA3937_RS11995	0.20	-1.1
2,730,147	+		DDA3937_RS11995	0.34	-3.2
2,730,147	+		DDA3937_RS11995	0.34	-1.3
2,730,147	+		DDA3937_RS11995	0.34	-0.5
2,730,147	+		DDA3937_RS11995	0.34	+1.8
2,730,147	+		DDA3937_RS11995	0.34	-1.3
2,730,147	+		DDA3937_RS11995	0.34	-1.1
2,730,147	+		DDA3937_RS11995	0.34	+1.9
2,730,147	+		DDA3937_RS11995	0.34	+1.0
2,730,147	+		DDA3937_RS11995	0.34	-0.9
2,730,148	-		DDA3937_RS11995	0.35	+0.3
2,730,148	-		DDA3937_RS11995	0.35	-0.4
2,730,148	-		DDA3937_RS11995	0.35	-1.4
2,730,148	-		DDA3937_RS11995	0.35	+1.2
2,730,148	-		DDA3937_RS11995	0.35	+0.4
2,730,148	-		DDA3937_RS11995	0.35	-0.9
2,730,148	-		DDA3937_RS11995	0.35	+1.2
2,730,148	-		DDA3937_RS11995	0.35	-1.5
2,730,148	-		DDA3937_RS11995	0.35	-2.2
2,730,148	-		DDA3937_RS11995	0.35	-0.5
2,730,148	-		DDA3937_RS11995	0.35	-3.0
2,730,148	-				-0.5
2,730,148	-		DDA3937_RS11995	0.35	+1.1
2,730,237	+		DDA3937_RS11995	0.81	-0.5
2,730,301	-				-2.2
2,730,301	-				-0.4
2,730,301	-				-1.3
2,730,387	+				-1.1
2,730,387	+				-1.7
2,730,421	-				-2.0
2,730,461	-				-0.2
2,730,480	+				-2.5
2,730,481	-				+0.5
2,730,547	+				-2.4
2,730,547	+				+0.6
2,730,547	+				+1.4
2,730,547	+				-2.2
2,730,547	+				-1.3
2,730,548	-				+0.2
2,730,548	-				-0.5
2,730,548	-				+1.2
2,730,548	-				-2.0
2,730,590	-				+0.4
2,730,598	+				-1.3
2,730,599	+				-2.1
2,730,599	+				+1.9
2,730,599	+				-2.2
2,730,599	+				+0.5
2,730,599	+				-2.8
2,730,599	+				+0.7
2,730,599	+				+2.5
2,730,600	-				+0.7
2,730,600	-				+0.3
2,730,600	-				+0.8