Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11810

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,682,200	-		DDA3937_RS11805	0.47	+1.6
2,682,214	+				+0.5
2,682,214	+		DDA3937_RS11805	0.49	-0.5
2,682,235	-		DDA3937_RS11805	0.51	-2.5
2,682,235	-		DDA3937_RS11805	0.51	+1.4
2,682,235	-		DDA3937_RS11805	0.51	-1.7
2,682,381	+		DDA3937_RS11805	0.67	+1.9
2,682,382	-		DDA3937_RS11805	0.67	-0.5
2,682,382	-		DDA3937_RS11805	0.67	-2.2
2,682,385	-		DDA3937_RS11805	0.68	+2.9
2,682,443	+		DDA3937_RS11805	0.74	-2.2
2,682,455	-		DDA3937_RS11805	0.75	-0.1
2,682,595	-				+0.5
2,682,615	-				-1.5
2,682,615	-				-2.4
2,682,632	-				-0.3
2,682,632	-				-0.2
2,682,661	+				-2.3
2,682,671	+				+3.1
2,682,924	-				+0.7
2,682,940	-				-1.5
2,683,005	+				-0.7
2,683,030	+				-2.0
2,683,032	+				-2.9
2,683,320	+		DDA3937_RS11810	0.25	+2.3
2,683,349	-		DDA3937_RS11810	0.29	-0.4
2,683,520	+		DDA3937_RS11810	0.50	-1.8
2,683,520	+		DDA3937_RS11810	0.50	+1.2
2,683,520	+		DDA3937_RS11810	0.50	+0.5
2,683,520	+		DDA3937_RS11810	0.50	+0.6
2,683,521	-		DDA3937_RS11810	0.50	-1.7
2,683,521	-		DDA3937_RS11810	0.50	+0.5
2,683,521	-		DDA3937_RS11810	0.50	+1.6
2,683,627	-		DDA3937_RS11810	0.63	-0.7
2,683,794	-		DDA3937_RS11810	0.83	+2.2
2,684,009	+				+2.9
2,684,009	+				-0.1
2,684,009	+				-2.1
2,684,009	+				+1.6
2,684,009	+				+0.9
2,684,009	+				-0.1
2,684,009	+				+2.4
2,684,009	+				-1.7
2,684,009	+				-0.8
2,684,009	+				-1.3
2,684,009	+				+0.1
2,684,010	-				+2.1
2,684,010	-				+0.9
2,684,010	-				+0.9
2,684,010	-				-0.7
2,684,018	+				+0.0
2,684,018	+				-0.7
2,684,018	+				-2.0
2,684,018	+				+0.0
2,684,018	+				-1.7
2,684,019	-				+1.0
2,684,019	-				+0.1
2,684,019	-				+2.1
2,684,109	-		DDA3937_RS11815	0.11	-2.2
2,684,109	-		DDA3937_RS11815	0.11	+1.9
2,684,109	-		DDA3937_RS11815	0.11	+0.8
2,684,156	+		DDA3937_RS11815	0.15	-3.1
2,684,156	+		DDA3937_RS11815	0.15	-0.8
2,684,156	+		DDA3937_RS11815	0.15	+0.7
2,684,157	-		DDA3937_RS11815	0.15	-1.3
2,684,157	-		DDA3937_RS11815	0.15	-1.0
2,684,157	-		DDA3937_RS11815	0.15	-2.7
2,684,157	-		DDA3937_RS11815	0.15	+2.0
2,684,157	-		DDA3937_RS11815	0.15	-2.3
2,684,157	-		DDA3937_RS11815	0.15	+1.3
2,684,157	-		DDA3937_RS11815	0.15	-2.1
2,684,157	-		DDA3937_RS11815	0.15	-0.4
2,684,157	-		DDA3937_RS11815	0.15	+0.2
2,684,210	+		DDA3937_RS11815	0.19	+2.5
2,684,211	-				-1.1
2,684,225	+		DDA3937_RS11815	0.20	-2.2
2,684,225	+		DDA3937_RS11815	0.20	+2.6
2,684,225	+		DDA3937_RS11815	0.20	-2.5
2,684,225	+		DDA3937_RS11815	0.20	+0.3
2,684,225	+		DDA3937_RS11815	0.20	+0.8
2,684,225	+		DDA3937_RS11815	0.20	-2.2
2,684,225	+		DDA3937_RS11815	0.20	+0.5
2,684,225	+		DDA3937_RS11815	0.20	-1.7
2,684,225	+		DDA3937_RS11815	0.20	-2.0
2,684,225	+		DDA3937_RS11815	0.20	+0.3
2,684,226	-		DDA3937_RS11815	0.20	-0.7
2,684,226	-		DDA3937_RS11815	0.20	-2.1
2,684,226	-		DDA3937_RS11815	0.20	-1.4
2,684,226	-		DDA3937_RS11815	0.20	-3.3
2,684,226	-		DDA3937_RS11815	0.20	-1.3
2,684,227	-		DDA3937_RS11815	0.21	+1.1
2,684,282	+		DDA3937_RS11815	0.25	-2.1
2,684,282	+		DDA3937_RS11815	0.25	-0.1
2,684,282	+		DDA3937_RS11815	0.25	+1.1
2,684,282	+		DDA3937_RS11815	0.25	-0.8
2,684,282	+		DDA3937_RS11815	0.25	-0.5
2,684,282	+		DDA3937_RS11815	0.25	+0.8
2,684,282	+		DDA3937_RS11815	0.25	-0.3
2,684,282	+		DDA3937_RS11815	0.25	+1.4
2,684,283	-		DDA3937_RS11815	0.25	+1.8
2,684,283	-		DDA3937_RS11815	0.25	-0.6
2,684,283	-		DDA3937_RS11815	0.25	+0.4
2,684,283	-		DDA3937_RS11815	0.25	-0.2
2,684,283	-		DDA3937_RS11815	0.25	-2.1
2,684,283	-		DDA3937_RS11815	0.25	-0.6
2,684,283	-		DDA3937_RS11815	0.25	-1.5
2,684,283	-		DDA3937_RS11815	0.25	+0.6
2,684,312	+		DDA3937_RS11815	0.27	+1.2
2,684,312	+		DDA3937_RS11815	0.27	-1.3
2,684,360	+		DDA3937_RS11815	0.31	-1.5
2,684,360	+		DDA3937_RS11815	0.31	-0.1
2,684,376	+		DDA3937_RS11815	0.32	-1.5
2,684,455	+		DDA3937_RS11815	0.38	-1.1
2,684,455	+		DDA3937_RS11815	0.38	+1.6
2,684,456	-		DDA3937_RS11815	0.39	-0.5
2,684,456	-		DDA3937_RS11815	0.39	-1.7
2,684,456	-		DDA3937_RS11815	0.39	-0.4
2,684,456	-		DDA3937_RS11815	0.39	-0.3
2,684,629	+		DDA3937_RS11815	0.52	+0.1
2,684,629	+		DDA3937_RS11815	0.52	-2.4
2,684,629	+		DDA3937_RS11815	0.52	-1.3
2,684,630	-		DDA3937_RS11815	0.52	-0.0
2,684,630	-		DDA3937_RS11815	0.52	-1.1
2,684,630	-		DDA3937_RS11815	0.52	-3.4
2,684,630	-				+3.8
2,684,639	+		DDA3937_RS11815	0.53	+1.6
2,684,639	+		DDA3937_RS11815	0.53	-0.4
2,684,639	+		DDA3937_RS11815	0.53	+1.9
2,684,639	+		DDA3937_RS11815	0.53	+0.2
2,684,639	+		DDA3937_RS11815	0.53	-1.1
2,684,639	+		DDA3937_RS11815	0.53	-2.6
2,684,639	+		DDA3937_RS11815	0.53	+1.6
2,684,639	+		DDA3937_RS11815	0.53	+0.8
2,684,639	+		DDA3937_RS11815	0.53	+1.1
2,684,639	+		DDA3937_RS11815	0.53	-0.4
2,684,639	+		DDA3937_RS11815	0.53	-1.3
2,684,640	-		DDA3937_RS11815	0.53	-1.5
2,684,640	-		DDA3937_RS11815	0.53	-0.1
2,684,640	-		DDA3937_RS11815	0.53	+0.8
2,684,640	-		DDA3937_RS11815	0.53	-1.8
2,684,640	-		DDA3937_RS11815	0.53	+0.6
2,684,640	-		DDA3937_RS11815	0.53	-2.1
2,684,640	-		DDA3937_RS11815	0.53	+0.3
2,684,640	-		DDA3937_RS11815	0.53	-0.4
2,684,718	-		DDA3937_RS11815	0.59	+0.8
2,684,720	+		DDA3937_RS11815	0.59	+1.0
2,684,720	+		DDA3937_RS11815	0.59	+0.2
2,684,721	-		DDA3937_RS11815	0.59	-0.6
2,684,727	+		DDA3937_RS11815	0.60	+0.9
2,684,727	+		DDA3937_RS11815	0.60	-0.9
2,684,839	-		DDA3937_RS11815	0.69	-1.5
2,684,856	+		DDA3937_RS11815	0.70	-1.3
2,684,857	-		DDA3937_RS11815	0.70	+1.7
2,684,883	-		DDA3937_RS11815	0.72	+0.9