Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11355

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,578,033	-				-3.7
2,578,064	+				+0.2
2,578,065	-				+0.7
2,578,076	+				-0.6
2,578,076	+				+3.5
2,578,077	-				-1.8
2,578,077	-				-1.1
2,578,077	-				-1.2
2,578,109	+				+0.1
2,578,110	-				-1.7
2,578,165	+				+0.9
2,578,165	+				-0.1
2,578,165	+				-1.2
2,578,165	+				-0.8
2,578,166	-				+1.2
2,578,233	+		DDA3937_RS11350	0.15	-1.3
2,578,331	+		DDA3937_RS11350	0.25	+0.8
2,578,359	+		DDA3937_RS11350	0.29	-0.3
2,578,360	-		DDA3937_RS11350	0.29	+0.7
2,578,374	+		DDA3937_RS11350	0.30	+0.1
2,578,375	-		DDA3937_RS11350	0.30	+0.1
2,578,375	-		DDA3937_RS11350	0.30	-2.5
2,578,375	-		DDA3937_RS11350	0.30	-2.5
2,578,375	-		DDA3937_RS11350	0.30	-0.2
2,578,375	-		DDA3937_RS11350	0.30	+1.1
2,578,375	-		DDA3937_RS11350	0.30	-2.6
2,578,385	+		DDA3937_RS11350	0.31	+1.7
2,578,385	+		DDA3937_RS11350	0.31	-3.1
2,578,385	+		DDA3937_RS11350	0.31	-2.4
2,578,386	-		DDA3937_RS11350	0.32	+2.2
2,578,395	+		DDA3937_RS11350	0.33	+1.9
2,578,395	+		DDA3937_RS11350	0.33	-1.8
2,578,396	-		DDA3937_RS11350	0.33	-1.4
2,578,528	+		DDA3937_RS11350	0.47	-2.0
2,578,529	-		DDA3937_RS11350	0.47	-0.8
2,578,545	+		DDA3937_RS11350	0.49	+1.2
2,578,545	+		DDA3937_RS11350	0.49	-0.8
2,578,546	-		DDA3937_RS11350	0.49	-0.7
2,578,546	-		DDA3937_RS11350	0.49	-1.3
2,578,546	-		DDA3937_RS11350	0.49	+0.1
2,578,581	+		DDA3937_RS11350	0.53	-0.5
2,578,581	+		DDA3937_RS11350	0.53	+2.5
2,578,581	+		DDA3937_RS11350	0.53	-0.5
2,578,582	-		DDA3937_RS11350	0.53	-0.3
2,578,582	-		DDA3937_RS11350	0.53	-2.3
2,578,582	-		DDA3937_RS11350	0.53	-1.1
2,578,593	+		DDA3937_RS11350	0.54	-0.3
2,578,593	+		DDA3937_RS11350	0.54	-2.4
2,578,593	+		DDA3937_RS11350	0.54	-0.8
2,578,594	-		DDA3937_RS11350	0.55	+0.0
2,578,594	-		DDA3937_RS11350	0.55	-1.5
2,578,594	-		DDA3937_RS11350	0.55	-1.3
2,578,594	-		DDA3937_RS11350	0.55	+0.7
2,578,594	-		DDA3937_RS11350	0.55	-1.6
2,578,594	-		DDA3937_RS11350	0.55	+2.0
2,578,723	-		DDA3937_RS11350	0.69	+0.1
2,578,815	+		DDA3937_RS11350	0.79	+0.6
2,578,815	+		DDA3937_RS11350	0.79	-1.5
2,578,815	+		DDA3937_RS11350	0.79	-1.8
2,578,815	+		DDA3937_RS11350	0.79	-3.3
2,578,821	+		DDA3937_RS11350	0.80	-1.2
2,578,865	+		DDA3937_RS11350	0.85	-1.7
2,578,934	+				-2.7
2,578,934	+				+1.4
2,578,934	+				-1.0
2,578,935	-				-0.1
2,578,935	-				-1.1
2,578,963	-				-2.1
2,579,001	+				+0.9
2,579,013	+				+0.1
2,579,014	-				-1.8
2,579,014	-				-1.6
2,579,124	-				-0.5
2,579,269	+		DDA3937_RS11355	0.22	-2.3
2,579,269	+		DDA3937_RS11355	0.22	+0.6
2,579,269	+		DDA3937_RS11355	0.22	-1.1
2,579,270	-		DDA3937_RS11355	0.22	-0.7
2,579,270	-		DDA3937_RS11355	0.22	-0.1
2,579,270	-		DDA3937_RS11355	0.22	+0.2
2,579,270	-		DDA3937_RS11355	0.22	-1.3
2,579,286	+		DDA3937_RS11355	0.24	-0.8
2,579,286	+		DDA3937_RS11355	0.24	+1.1
2,579,451	-		DDA3937_RS11355	0.38	-1.4
2,579,544	+		DDA3937_RS11355	0.47	-0.8
2,579,545	-		DDA3937_RS11355	0.47	-0.2
2,579,545	-		DDA3937_RS11355	0.47	+0.1
2,579,545	-		DDA3937_RS11355	0.47	-0.7
2,579,560	-		DDA3937_RS11355	0.48	-2.6
2,579,568	-		DDA3937_RS11355	0.49	-2.8
2,579,600	-		DDA3937_RS11355	0.52	-0.6
2,579,643	+		DDA3937_RS11355	0.55	-0.1
2,579,644	-		DDA3937_RS11355	0.56	-1.5
2,579,698	+		DDA3937_RS11355	0.60	-1.7
2,579,804	+		DDA3937_RS11355	0.70	-1.1
2,579,812	+		DDA3937_RS11355	0.70	+2.0
2,579,813	-		DDA3937_RS11355	0.71	-2.1
2,579,813	-		DDA3937_RS11355	0.71	+1.3
2,579,849	+		DDA3937_RS11355	0.74	-1.8
2,579,849	+		DDA3937_RS11355	0.74	-1.5
2,579,849	+		DDA3937_RS11355	0.74	-1.1
2,579,850	-		DDA3937_RS11355	0.74	+2.2
2,579,850	-		DDA3937_RS11355	0.74	+4.6
2,579,850	-		DDA3937_RS11355	0.74	+1.5
2,579,857	+		DDA3937_RS11355	0.74	-0.2
2,579,857	+		DDA3937_RS11355	0.74	-0.1
2,579,857	+		DDA3937_RS11355	0.74	-2.2
2,579,858	-		DDA3937_RS11355	0.75	+0.1
2,579,896	+		DDA3937_RS11355	0.78	-2.3
2,579,952	-		DDA3937_RS11355	0.83	-0.6
2,579,982	+		DDA3937_RS11355	0.86	-0.2
2,579,986	+		DDA3937_RS11355	0.86	-3.1
2,579,986	+		DDA3937_RS11355	0.86	-0.3
2,579,987	-		DDA3937_RS11355	0.86	+0.5
2,579,987	-		DDA3937_RS11355	0.86	+2.0
2,579,987	-		DDA3937_RS11355	0.86	-1.8
2,579,987	-		DDA3937_RS11355	0.86	+1.2
2,579,987	-		DDA3937_RS11355	0.86	+1.0
2,580,011	+		DDA3937_RS11355	0.88	-0.1
2,580,106	-				-3.5
2,580,151	+				-0.3
2,580,152	-				-2.2
2,580,152	-				-0.8
2,580,152	-				-1.1
2,580,154	-				-2.5
2,580,175	+				-0.8
2,580,176	-				-0.6
2,580,176	-				-1.8
2,580,176	-				-0.5
2,580,345	+		DDA3937_RS11360	0.14	+2.3
2,580,345	+		DDA3937_RS11360	0.14	-1.8
2,580,346	-		DDA3937_RS11360	0.14	+0.0
2,580,422	+		DDA3937_RS11360	0.20	+2.6
2,580,423	-		DDA3937_RS11360	0.20	-2.5
2,580,468	+		DDA3937_RS11360	0.24	-1.6
2,580,468	+		DDA3937_RS11360	0.24	-0.4
2,580,541	+		DDA3937_RS11360	0.30	+2.2
2,580,591	+		DDA3937_RS11360	0.33	-1.2
2,580,591	+		DDA3937_RS11360	0.33	+0.1
2,580,591	+		DDA3937_RS11360	0.33	+1.5
2,580,591	+		DDA3937_RS11360	0.33	-0.1
2,580,591	+		DDA3937_RS11360	0.33	-1.3
2,580,594	+		DDA3937_RS11360	0.34	-1.8
2,580,594	+		DDA3937_RS11360	0.34	-0.1
2,580,595	-		DDA3937_RS11360	0.34	-1.7
2,580,595	-		DDA3937_RS11360	0.34	-1.5
2,580,747	+		DDA3937_RS11360	0.45	+1.2
2,580,748	-		DDA3937_RS11360	0.46	-1.8
2,580,748	-		DDA3937_RS11360	0.46	-3.3
2,580,763	-		DDA3937_RS11360	0.47	-1.3
2,580,778	+		DDA3937_RS11360	0.48	-0.8
2,580,883	-		DDA3937_RS11360	0.56	-1.3
2,580,885	+		DDA3937_RS11360	0.56	+1.4
2,580,886	-		DDA3937_RS11360	0.56	-0.8
2,580,886	-		DDA3937_RS11360	0.56	+0.5
2,580,886	-		DDA3937_RS11360	0.56	-1.1
2,580,886	-		DDA3937_RS11360	0.56	-2.4
2,580,912	+		DDA3937_RS11360	0.58	-2.3
2,580,912	+		DDA3937_RS11360	0.58	+3.6
2,580,913	-		DDA3937_RS11360	0.58	+0.5
2,580,913	-		DDA3937_RS11360	0.58	+1.0
2,580,913	-		DDA3937_RS11360	0.58	+0.9
2,580,913	-		DDA3937_RS11360	0.58	-1.8
2,580,933	-		DDA3937_RS11360	0.60	-1.5
2,580,954	+		DDA3937_RS11360	0.61	+0.7
2,580,954	+		DDA3937_RS11360	0.61	+0.2
2,580,954	+		DDA3937_RS11360	0.61	+0.7
2,580,954	+		DDA3937_RS11360	0.61	+0.8
2,580,954	+		DDA3937_RS11360	0.61	-2.0
2,580,955	-		DDA3937_RS11360	0.62	-2.2
2,580,955	-		DDA3937_RS11360	0.62	-0.5
2,580,955	-		DDA3937_RS11360	0.62	-1.1
2,580,955	-		DDA3937_RS11360	0.62	+0.4
2,580,981	+		DDA3937_RS11360	0.64	-0.6
2,580,981	+		DDA3937_RS11360	0.64	-0.1
2,580,982	-		DDA3937_RS11360	0.64	-0.5
2,581,060	+		DDA3937_RS11360	0.70	-0.1
2,581,133	+		DDA3937_RS11360	0.75	+1.5
2,581,133	+		DDA3937_RS11360	0.75	-0.5
2,581,133	+		DDA3937_RS11360	0.75	-1.5
2,581,137	+		DDA3937_RS11360	0.76	-0.1
2,581,137	+		DDA3937_RS11360	0.76	+0.2
2,581,137	+		DDA3937_RS11360	0.76	-2.5
2,581,138	-		DDA3937_RS11360	0.76	+2.7