Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11065

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,494,873	-		DDA3937_RS11055	0.77	-1.4
2,494,873	-		DDA3937_RS11055	0.77	+0.9
2,494,876	+		DDA3937_RS11055	0.77	-2.8
2,494,876	+		DDA3937_RS11055	0.77	-1.9
2,495,025	+				+1.4
2,495,136	-		DDA3937_RS11060	0.17	+3.6
2,495,136	-		DDA3937_RS11060	0.17	-0.4
2,495,136	-		DDA3937_RS11060	0.17	-0.0
2,495,234	-		DDA3937_RS11060	0.29	-3.5
2,495,412	+		DDA3937_RS11060	0.51	+2.2
2,495,412	+		DDA3937_RS11060	0.51	-0.8
2,495,412	+		DDA3937_RS11060	0.51	-2.0
2,495,412	+		DDA3937_RS11060	0.51	-1.4
2,495,412	+		DDA3937_RS11060	0.51	+0.7
2,495,412	+		DDA3937_RS11060	0.51	-0.1
2,495,412	+		DDA3937_RS11060	0.51	-0.0
2,495,412	+		DDA3937_RS11060	0.51	-0.1
2,495,412	+		DDA3937_RS11060	0.51	+2.3
2,495,412	+		DDA3937_RS11060	0.51	+1.6
2,495,413	-		DDA3937_RS11060	0.51	+2.2
2,495,413	-		DDA3937_RS11060	0.51	-4.5
2,495,413	-		DDA3937_RS11060	0.51	-3.3
2,495,413	-		DDA3937_RS11060	0.51	-4.2
2,495,423	-		DDA3937_RS11060	0.52	+0.1
2,495,423	-		DDA3937_RS11060	0.52	-0.8
2,495,424	+		DDA3937_RS11060	0.53	-1.9
2,495,424	+		DDA3937_RS11060	0.53	+0.6
2,495,424	+		DDA3937_RS11060	0.53	+2.6
2,495,424	+		DDA3937_RS11060	0.53	-0.1
2,495,424	+		DDA3937_RS11060	0.53	+1.3
2,495,425	-		DDA3937_RS11060	0.53	-2.0
2,495,425	-		DDA3937_RS11060	0.53	+1.6
2,495,425	-		DDA3937_RS11060	0.53	+1.3
2,495,425	-		DDA3937_RS11060	0.53	-0.4
2,495,509	+		DDA3937_RS11060	0.63	+0.7
2,495,509	+		DDA3937_RS11060	0.63	+1.4
2,495,531	+		DDA3937_RS11060	0.66	+1.9
2,495,531	+		DDA3937_RS11060	0.66	-1.0
2,495,531	+		DDA3937_RS11060	0.66	+1.0
2,495,531	+		DDA3937_RS11060	0.66	+0.8
2,495,531	+		DDA3937_RS11060	0.66	-1.8
2,495,532	-		DDA3937_RS11060	0.66	-0.6
2,495,532	-		DDA3937_RS11060	0.66	-0.4
2,495,532	-		DDA3937_RS11060	0.66	-0.2
2,495,532	-		DDA3937_RS11060	0.66	-0.5
2,495,532	-		DDA3937_RS11060	0.66	+1.3
2,495,532	-		DDA3937_RS11060	0.66	+1.0
2,495,532	-		DDA3937_RS11060	0.66	+0.0
2,495,532	-		DDA3937_RS11060	0.66	+0.5
2,495,534	+		DDA3937_RS11060	0.66	-3.0
2,495,534	+		DDA3937_RS11060	0.66	+0.2
2,495,534	+		DDA3937_RS11060	0.66	-1.4
2,495,534	+		DDA3937_RS11060	0.66	+0.7
2,495,535	-		DDA3937_RS11060	0.66	+0.4
2,495,535	-		DDA3937_RS11060	0.66	-0.3
2,495,535	-		DDA3937_RS11060	0.66	-1.4
2,495,535	-		DDA3937_RS11060	0.66	+1.4
2,495,535	-		DDA3937_RS11060	0.66	-0.0
2,495,535	-		DDA3937_RS11060	0.66	-0.4
2,495,535	-		DDA3937_RS11060	0.66	-0.4
2,495,535	-		DDA3937_RS11060	0.66	-3.4
2,495,535	-		DDA3937_RS11060	0.66	+1.6
2,495,535	-		DDA3937_RS11060	0.66	-0.2
2,495,560	+		DDA3937_RS11060	0.69	-0.0
2,495,561	-		DDA3937_RS11060	0.70	-2.1
2,495,564	+		DDA3937_RS11060	0.70	-0.2
2,495,564	+		DDA3937_RS11060	0.70	-1.3
2,495,564	+		DDA3937_RS11060	0.70	-2.8
2,495,564	+		DDA3937_RS11060	0.70	-1.2
2,495,564	+		DDA3937_RS11060	0.70	+1.6
2,495,564	+		DDA3937_RS11060	0.70	-2.4
2,495,564	+		DDA3937_RS11060	0.70	+0.1
2,495,564	+		DDA3937_RS11060	0.70	-3.2
2,495,564	+		DDA3937_RS11060	0.70	-0.3
2,495,564	+		DDA3937_RS11060	0.70	-3.1
2,495,564	+		DDA3937_RS11060	0.70	-3.5
2,495,564	+		DDA3937_RS11060	0.70	+0.9
2,495,564	+		DDA3937_RS11060	0.70	+1.3
2,495,564	+		DDA3937_RS11060	0.70	-3.4
2,495,564	+		DDA3937_RS11060	0.70	+1.5
2,495,564	+		DDA3937_RS11060	0.70	+1.2
2,495,564	+		DDA3937_RS11060	0.70	+1.4
2,495,564	+		DDA3937_RS11060	0.70	-1.8
2,495,564	+		DDA3937_RS11060	0.70	-2.8
2,495,564	+		DDA3937_RS11060	0.70	+0.6
2,495,564	+		DDA3937_RS11060	0.70	+0.6
2,495,564	+		DDA3937_RS11060	0.70	+0.2
2,495,564	+		DDA3937_RS11060	0.70	-0.6
2,495,565	-		DDA3937_RS11060	0.70	+0.6
2,495,565	-		DDA3937_RS11060	0.70	+0.6
2,495,565	-		DDA3937_RS11060	0.70	-0.4
2,495,565	-		DDA3937_RS11060	0.70	-0.6
2,495,565	-		DDA3937_RS11060	0.70	-0.6
2,495,565	-		DDA3937_RS11060	0.70	+0.3
2,495,565	-		DDA3937_RS11060	0.70	-2.3
2,495,565	-		DDA3937_RS11060	0.70	-1.7
2,495,565	-		DDA3937_RS11060	0.70	+1.2
2,495,565	-		DDA3937_RS11060	0.70	+0.5
2,495,565	-		DDA3937_RS11060	0.70	-0.4
2,495,565	-		DDA3937_RS11060	0.70	-0.6
2,495,565	-		DDA3937_RS11060	0.70	-1.1
2,495,565	-		DDA3937_RS11060	0.70	+1.1
2,495,565	-		DDA3937_RS11060	0.70	-0.4
2,495,565	-		DDA3937_RS11060	0.70	+1.6
2,495,619	+		DDA3937_RS11060	0.77	+1.8
2,495,728	-				+0.3
2,495,738	-				-2.1
2,495,805	+				+0.9
2,495,874	-				+1.8
2,495,902	+				+0.2
2,495,903	-				-2.9
2,495,941	+		DDA3937_RS11065	0.12	-1.1
2,495,942	-		DDA3937_RS11065	0.12	-2.0
2,496,025	+		DDA3937_RS11065	0.27	+0.1
2,496,025	+		DDA3937_RS11065	0.27	-3.0
2,496,026	-				-0.0
2,496,026	-		DDA3937_RS11065	0.27	+1.8
2,496,027	+		DDA3937_RS11065	0.27	+0.3
2,496,028	-		DDA3937_RS11065	0.27	+2.7
2,496,127	+		DDA3937_RS11065	0.44	-1.3
2,496,127	+		DDA3937_RS11065	0.44	-0.4
2,496,127	+		DDA3937_RS11065	0.44	-3.0
2,496,128	-		DDA3937_RS11065	0.45	+1.8
2,496,128	-		DDA3937_RS11065	0.45	-2.5
2,496,193	-		DDA3937_RS11065	0.56	-0.0
2,496,193	-		DDA3937_RS11065	0.56	-3.1
2,496,193	-		DDA3937_RS11065	0.56	-0.1
2,496,193	-		DDA3937_RS11065	0.56	-2.1
2,496,223	+		DDA3937_RS11065	0.61	-0.3
2,496,224	-		DDA3937_RS11065	0.61	-1.0
2,496,358	+		DDA3937_RS11065	0.84	-0.0
2,496,358	+		DDA3937_RS11065	0.84	+0.7
2,496,359	-		DDA3937_RS11065	0.84	+1.6
2,496,370	+		DDA3937_RS11065	0.86	+2.7
2,496,371	-		DDA3937_RS11065	0.87	+1.6
2,496,371	-		DDA3937_RS11065	0.87	+1.4
2,496,371	-		DDA3937_RS11065	0.87	-0.8
2,496,371	-		DDA3937_RS11065	0.87	-1.3
2,496,376	-		DDA3937_RS11065	0.87	-0.3
2,496,376	-		DDA3937_RS11065	0.87	-3.1
2,496,376	-		DDA3937_RS11065	0.87	-0.1
2,496,376	-		DDA3937_RS11065	0.87	+2.3
2,496,376	-		DDA3937_RS11065	0.87	+0.6
2,496,396	-				-2.0
2,496,449	-				+0.4
2,496,496	+				-0.8
2,496,501	+				-2.4
2,496,501	+				-0.3
2,496,502	-				-1.9
2,496,502	-				-1.0
2,496,700	+				-2.7
2,496,700	+				-1.6
2,496,700	+				-0.0
2,496,701	-				+1.4
2,496,702	+				-3.3
2,496,702	+				+0.2
2,496,703	-				+2.1
2,496,737	-				+1.0
2,496,749	+				-0.0
2,496,812	+		DDA3937_RS11070	0.11	-0.8
2,496,812	+		DDA3937_RS11070	0.11	-2.7
2,496,812	+		DDA3937_RS11070	0.11	+1.0
2,496,812	+		DDA3937_RS11070	0.11	-1.6
2,496,814	+		DDA3937_RS11070	0.12	+1.7
2,496,815	-		DDA3937_RS11070	0.12	-0.9
2,496,815	-		DDA3937_RS11070	0.12	+2.6
2,496,815	-		DDA3937_RS11070	0.12	-1.9
2,496,815	-		DDA3937_RS11070	0.12	+1.3
2,496,815	-		DDA3937_RS11070	0.12	-1.8
2,496,816	+		DDA3937_RS11070	0.12	-0.6
2,496,816	+		DDA3937_RS11070	0.12	-2.1
2,496,816	+		DDA3937_RS11070	0.12	-1.5
2,496,816	+		DDA3937_RS11070	0.12	-1.8
2,496,817	-		DDA3937_RS11070	0.12	-1.3
2,496,817	-		DDA3937_RS11070	0.12	-0.0
2,496,922	+		DDA3937_RS11070	0.19	-1.8
2,496,968	+		DDA3937_RS11070	0.23	-1.8
2,496,969	-		DDA3937_RS11070	0.23	-1.6
2,496,969	-		DDA3937_RS11070	0.23	-1.3
2,496,997	+		DDA3937_RS11070	0.25	-0.8
2,496,997	+		DDA3937_RS11070	0.25	+1.6
2,497,154	+		DDA3937_RS11070	0.36	-1.5
2,497,203	+		DDA3937_RS11070	0.40	-0.8
2,497,222	-		DDA3937_RS11070	0.41	+0.3
2,497,224	+		DDA3937_RS11070	0.41	-2.5
2,497,245	-		DDA3937_RS11070	0.43	-0.8
2,497,283	+		DDA3937_RS11070	0.45	+1.2
2,497,428	-		DDA3937_RS11070	0.56	+1.9
2,497,428	-		DDA3937_RS11070	0.56	-2.2
2,497,428	-		DDA3937_RS11070	0.56	-0.6
2,497,429	+		DDA3937_RS11070	0.56	-0.8
2,497,429	+		DDA3937_RS11070	0.56	-2.9
2,497,429	+		DDA3937_RS11070	0.56	+2.0