Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10285

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,317,076	+		DDA3937_RS10275	0.57	+1.0
2,317,077	-		DDA3937_RS10275	0.57	+1.7
2,317,136	+		DDA3937_RS10275	0.79	+2.6
2,317,137	-		DDA3937_RS10275	0.80	-0.5
2,317,148	-		DDA3937_RS10275	0.84	-0.4
2,317,170	-				+1.6
2,317,208	+				-1.0
2,317,208	+				-1.2
2,317,209	-				-0.7
2,317,211	+				+1.8
2,317,212	-				-2.4
2,317,226	+				-1.2
2,317,226	+				+2.6
2,317,226	+				-0.0
2,317,226	+				-1.7
2,317,226	+				-1.7
2,317,227	-				+0.3
2,317,229	+				+0.8
2,317,229	+				-2.1
2,317,229	+				-0.4
2,317,230	-				-2.1
2,317,251	+				-0.2
2,317,251	+				+1.2
2,317,251	+				+1.9
2,317,251	+				-2.5
2,317,300	+				+2.3
2,317,301	-				+2.1
2,317,301	-				-2.1
2,317,468	+		DDA3937_RS10280	0.26	-3.1
2,317,468	+		DDA3937_RS10280	0.26	-2.0
2,317,469	-		DDA3937_RS10280	0.26	-2.4
2,317,469	-		DDA3937_RS10280	0.26	+0.4
2,317,469	-		DDA3937_RS10280	0.26	-1.2
2,317,469	-		DDA3937_RS10280	0.26	-0.7
2,317,469	-		DDA3937_RS10280	0.26	-2.4
2,317,480	+		DDA3937_RS10280	0.28	-1.0
2,317,540	+		DDA3937_RS10280	0.38	+0.8
2,317,540	+		DDA3937_RS10280	0.38	+0.4
2,317,540	+		DDA3937_RS10280	0.38	-1.6
2,317,541	-		DDA3937_RS10280	0.38	+1.2
2,317,541	-		DDA3937_RS10280	0.38	-3.4
2,317,541	-		DDA3937_RS10280	0.38	+0.2
2,317,583	+		DDA3937_RS10280	0.44	-0.6
2,317,583	+		DDA3937_RS10280	0.44	-0.7
2,317,585	+		DDA3937_RS10280	0.45	+0.4
2,317,585	+		DDA3937_RS10280	0.45	-0.0
2,317,585	+		DDA3937_RS10280	0.45	-2.4
2,317,585	+		DDA3937_RS10280	0.45	-1.4
2,317,585	+		DDA3937_RS10280	0.45	-0.7
2,317,585	+		DDA3937_RS10280	0.45	+0.7
2,317,585	+		DDA3937_RS10280	0.45	-1.3
2,317,585	+		DDA3937_RS10280	0.45	+1.3
2,317,585	+		DDA3937_RS10280	0.45	-0.0
2,317,586	-		DDA3937_RS10280	0.45	-3.8
2,317,586	-		DDA3937_RS10280	0.45	-0.7
2,317,586	-		DDA3937_RS10280	0.45	-2.9
2,317,586	-		DDA3937_RS10280	0.45	-2.3
2,317,586	-		DDA3937_RS10280	0.45	-1.4
2,317,586	-		DDA3937_RS10280	0.45	+0.5
2,317,617	+		DDA3937_RS10280	0.50	-1.2
2,317,617	+		DDA3937_RS10280	0.50	-1.0
2,317,617	+		DDA3937_RS10280	0.50	+0.9
2,317,617	+		DDA3937_RS10280	0.50	-1.0
2,317,617	+		DDA3937_RS10280	0.50	-0.2
2,317,618	-		DDA3937_RS10280	0.50	+1.3
2,317,621	-		DDA3937_RS10280	0.50	+2.0
2,317,680	+		DDA3937_RS10280	0.59	-1.0
2,317,680	+		DDA3937_RS10280	0.59	-2.7
2,317,766	+		DDA3937_RS10280	0.73	-3.7
2,317,766	+		DDA3937_RS10280	0.73	-1.0
2,317,766	+		DDA3937_RS10280	0.73	+2.6
2,317,767	-		DDA3937_RS10280	0.73	+0.4
2,317,767	-		DDA3937_RS10280	0.73	-2.6
2,317,767	-		DDA3937_RS10280	0.73	-3.3
2,317,923	+				-2.2
2,317,924	-				-1.0
2,317,940	+				-2.1
2,317,940	+				+1.6
2,317,941	-				-0.0
2,317,941	-				+3.0
2,317,957	+				+1.1
2,318,042	+				+1.2
2,318,042	+				-0.4
2,318,042	+				-0.7
2,318,043	-				-1.0
2,318,081	+				-1.5
2,318,081	+				+0.9
2,318,081	+				-2.7
2,318,088	+				-0.2
2,318,089	-				-1.0
2,318,123	-		DDA3937_RS10285	0.12	-0.7
2,318,172	+		DDA3937_RS10285	0.17	-1.7
2,318,215	+		DDA3937_RS10285	0.21	+1.9
2,318,295	+		DDA3937_RS10285	0.29	-1.4
2,318,295	+		DDA3937_RS10285	0.29	+0.3
2,318,296	-		DDA3937_RS10285	0.29	-1.4
2,318,296	-		DDA3937_RS10285	0.29	+1.6
2,318,555	+		DDA3937_RS10285	0.54	-0.1
2,318,555	+		DDA3937_RS10285	0.54	+0.4
2,318,555	+		DDA3937_RS10285	0.54	-0.0
2,318,556	-		DDA3937_RS10285	0.55	-1.7
2,318,610	+		DDA3937_RS10285	0.60	-0.8
2,318,610	+		DDA3937_RS10285	0.60	+0.6
2,318,611	-		DDA3937_RS10285	0.60	-1.6
2,318,611	-		DDA3937_RS10285	0.60	-1.3
2,318,784	+		DDA3937_RS10285	0.77	-0.8
2,318,784	+		DDA3937_RS10285	0.77	-0.3
2,318,784	+		DDA3937_RS10285	0.77	+0.4
2,318,784	+		DDA3937_RS10285	0.77	-0.1
2,318,785	-		DDA3937_RS10285	0.77	-2.7
2,318,785	-		DDA3937_RS10285	0.77	-2.3
2,318,785	-		DDA3937_RS10285	0.77	+2.9
2,318,785	-		DDA3937_RS10285	0.77	-3.2
2,318,785	-		DDA3937_RS10285	0.77	-2.3
2,318,785	-		DDA3937_RS10285	0.77	+2.9
2,318,785	-		DDA3937_RS10285	0.77	+1.8
2,318,834	-		DDA3937_RS10285	0.82	-1.6
2,318,857	+		DDA3937_RS10285	0.84	+1.4
2,318,858	-		DDA3937_RS10285	0.84	+1.6
2,318,859	+		DDA3937_RS10285	0.84	+1.8
2,318,859	+				+2.3
2,318,859	+		DDA3937_RS10285	0.84	-1.2
2,318,859	+		DDA3937_RS10285	0.84	-1.4
2,318,859	+		DDA3937_RS10285	0.84	+0.6
2,318,949	+				+1.4
2,318,949	+				+1.6
2,318,949	+				-1.7
2,318,950	-				-0.6
2,318,950	-				-2.8
2,318,950	-				+2.9
2,318,991	+				+3.0
2,318,991	+				-2.0
2,319,000	+				+0.7
2,319,000	+				-2.0
2,319,000	+				-1.2
2,319,000	+				-3.1
2,319,001	-				-2.0
2,319,001	-				-2.4
2,319,023	+				+1.6
2,319,023	+				-0.0
2,319,023	+				+0.3
2,319,023	+				+2.4
2,319,049	-				-2.9
2,319,082	+				+1.1
2,319,082	+				+2.4
2,319,083	-				-2.0
2,319,273	-				-3.1
2,319,295	-				-1.6
2,319,351	+		DDA3937_RS10290	0.11	-2.1
2,319,367	-		DDA3937_RS10290	0.12	-1.0
2,319,367	-		DDA3937_RS10290	0.12	-3.1
2,319,491	+		DDA3937_RS10290	0.19	+0.3
2,319,492	-		DDA3937_RS10290	0.19	+2.0
2,319,535	+		DDA3937_RS10290	0.21	-0.2
2,319,535	+		DDA3937_RS10290	0.21	-0.5
2,319,535	+		DDA3937_RS10290	0.21	-0.0
2,319,535	+		DDA3937_RS10290	0.21	+3.4
2,319,535	+				-0.0
2,319,536	-		DDA3937_RS10290	0.21	-0.2
2,319,536	-		DDA3937_RS10290	0.21	-1.2
2,319,536	-		DDA3937_RS10290	0.21	+0.3
2,319,650	+		DDA3937_RS10290	0.27	-0.3
2,319,963	+		DDA3937_RS10290	0.44	+1.1