Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10035

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,264,225	-		DDA3937_RS10025	0.64	-1.2
2,264,246	-		DDA3937_RS10025	0.67	+1.4
2,264,246	-		DDA3937_RS10025	0.67	-0.2
2,264,246	-		DDA3937_RS10025	0.67	-2.5
2,264,268	+		DDA3937_RS10025	0.70	-1.2
2,264,268	+		DDA3937_RS10025	0.70	-0.6
2,264,269	-		DDA3937_RS10025	0.70	+0.8
2,264,279	-		DDA3937_RS10025	0.71	+0.8
2,264,279	-		DDA3937_RS10025	0.71	-1.2
2,264,287	+		DDA3937_RS10025	0.72	-1.4
2,264,306	-		DDA3937_RS10025	0.75	+1.1
2,264,414	+		DDA3937_RS10025	0.89	+2.2
2,264,414	+		DDA3937_RS10025	0.89	-0.6
2,264,414	+		DDA3937_RS10025	0.89	+1.4
2,264,415	-		DDA3937_RS10025	0.89	-1.0
2,264,415	-		DDA3937_RS10025	0.89	-1.6
2,264,415	-				+0.6
2,264,628	+				+0.3
2,264,628	+				-0.4
2,264,628	+				+3.4
2,264,629	-				-0.0
2,264,629	-				+0.9
2,264,638	+				-1.4
2,264,638	+				-1.7
2,264,638	+				-0.2
2,264,638	+				+1.4
2,264,638	+				+0.8
2,264,639	-				-0.6
2,264,639	-				+1.0
2,264,639	-				-1.4
2,264,639	-				+1.4
2,264,642	+				-1.4
2,264,643	-				+1.7
2,264,679	-				-1.4
2,264,683	+				-2.8
2,264,683	+				+1.4
2,264,683	+				-0.0
2,264,683	+				-2.3
2,264,683	+				+1.6
2,264,683	+				+1.0
2,264,684	-				+3.6
2,264,684	-				-0.2
2,264,684	-				-1.2
2,264,684	-				-1.9
2,264,684	-				+1.6
2,264,684	-				-1.0
2,264,685	+				-2.1
2,264,685	+				-2.4
2,264,685	+				+0.7
2,264,685	+				+1.6
2,264,685	+				+1.1
2,264,685	+				-1.4
2,264,685	+				-0.6
2,264,686	-				-0.4
2,264,686	-				+0.7
2,264,686	-				-0.0
2,264,686	-				-2.7
2,264,686	-				-0.2
2,264,686	-				+1.6
2,264,686	-				-1.6
2,264,686	-				+3.8
2,264,686	-				+0.1
2,264,690	-				-0.7
2,264,690	-				+1.1
2,264,708	+				+1.0
2,264,708	+				+2.9
2,264,708	+				-2.1
2,264,720	-				+0.1
2,264,720	-				+1.0
2,264,774	+				+2.2
2,264,839	+		DDA3937_RS10030	0.13	-1.2
2,264,920	+		DDA3937_RS10030	0.40	-2.0
2,264,936	+		DDA3937_RS10030	0.45	+0.7
2,264,936	+		DDA3937_RS10030	0.45	-0.0
2,264,937	-				-0.0
2,264,937	-		DDA3937_RS10030	0.46	-2.2
2,264,989	+		DDA3937_RS10030	0.63	+1.8
2,265,022	+		DDA3937_RS10030	0.74	+0.8
2,265,022	+		DDA3937_RS10030	0.74	+0.5
2,265,025	+		DDA3937_RS10030	0.75	-1.2
2,265,044	-		DDA3937_RS10030	0.82	-0.4
2,265,044	-		DDA3937_RS10030	0.82	+0.8
2,265,050	-		DDA3937_RS10030	0.84	-2.1
2,265,214	-				+1.1
2,265,227	-				+0.3
2,265,296	+		DDA3937_RS10035	0.12	-1.3
2,265,296	+		DDA3937_RS10035	0.12	+0.5
2,265,296	+		DDA3937_RS10035	0.12	+1.5
2,265,296	+		DDA3937_RS10035	0.12	-0.0
2,265,336	+		DDA3937_RS10035	0.16	+0.6
2,265,336	+		DDA3937_RS10035	0.16	+0.8
2,265,336	+		DDA3937_RS10035	0.16	+0.7
2,265,337	-		DDA3937_RS10035	0.16	-0.2
2,265,337	-		DDA3937_RS10035	0.16	+1.9
2,265,337	-		DDA3937_RS10035	0.16	-1.0
2,265,337	-		DDA3937_RS10035	0.16	+0.5
2,265,337	-		DDA3937_RS10035	0.16	+0.8
2,265,427	+		DDA3937_RS10035	0.25	+0.7
2,265,444	+		DDA3937_RS10035	0.27	-0.0
2,265,444	+		DDA3937_RS10035	0.27	-1.7
2,265,556	+		DDA3937_RS10035	0.38	+1.2
2,265,557	-		DDA3937_RS10035	0.38	+1.0
2,265,865	+		DDA3937_RS10035	0.70	+1.5
2,265,865	+		DDA3937_RS10035	0.70	+1.8
2,265,865	+		DDA3937_RS10035	0.70	+0.8
2,265,865	+		DDA3937_RS10035	0.70	-2.7
2,265,866	-		DDA3937_RS10035	0.70	+1.6
2,265,866	-		DDA3937_RS10035	0.70	+1.5
2,265,950	+		DDA3937_RS10035	0.79	+1.9
2,265,950	+		DDA3937_RS10035	0.79	+1.4
2,265,951	-		DDA3937_RS10035	0.79	+1.5
2,266,017	+		DDA3937_RS10035	0.86	-1.0
2,266,022	+		DDA3937_RS10035	0.86	-1.0
2,266,023	-		DDA3937_RS10035	0.86	+0.8
2,266,026	-		DDA3937_RS10035	0.87	-0.8
2,266,091	+				-1.0
2,266,091	+				+2.1
2,266,092	-				-0.2
2,266,195	+				+0.9
2,266,327	-		DDA3937_RS10040	0.24	+1.6
2,266,390	+		DDA3937_RS10040	0.32	-1.6
2,266,454	+		DDA3937_RS10040	0.41	+0.7
2,266,481	+		DDA3937_RS10040	0.44	+1.1
2,266,714	-		DDA3937_RS10040	0.76	+1.3
2,266,768	+		DDA3937_RS10040	0.83	-0.3
2,266,769	-		DDA3937_RS10040	0.83	-0.4
2,266,769	-		DDA3937_RS10040	0.83	+2.2
2,266,769	-		DDA3937_RS10040	0.83	-2.4
2,266,769	-		DDA3937_RS10040	0.83	-0.7
2,266,769	-		DDA3937_RS10040	0.83	-0.0
2,266,779	+		DDA3937_RS10040	0.84	+1.7
2,266,894	+				-1.9
2,266,894	+				+1.1
2,266,894	+				-2.8
2,266,894	+				+1.2
2,266,894	+				-1.4
2,266,894	+				-2.3
2,266,894	+				-0.4
2,266,894	+				-0.5
2,266,894	+				+1.8
2,266,895	-				+2.4
2,266,895	-				-1.2
2,266,895	-				+2.7
2,266,895	-				+0.4
2,266,895	-				+1.7
2,266,910	+				+0.7
2,266,935	+				-0.6
2,266,959	+				-0.7
2,266,959	+				-0.9
2,266,959	+				-1.2
2,266,959	+				-3.0
2,266,959	+				-1.9
2,266,960	-				-1.3
2,266,960	-				+1.6
2,266,996	+				-2.1
2,267,028	+				-1.6
2,267,029	-				-2.0
2,267,032	+				-1.2
2,267,033	-				-1.2
2,267,033	-				+0.3
2,267,051	+				-3.5
2,267,051	+				-1.4
2,267,051	+				-1.4
2,267,052	-				-0.7
2,267,052	-				-1.1
2,267,052	-				-1.1
2,267,052	-				-2.4
2,267,052	-				+1.0
2,267,052	-				-3.6
2,267,054	+				-2.7
2,267,055	-				-0.0
2,267,055	-				-4.6
2,267,055	-				-2.2
2,267,074	+		DDA3937_RS10045	0.14	-2.4
2,267,091	-		DDA3937_RS10045	0.19	-3.2
2,267,091	-		DDA3937_RS10045	0.19	-2.3
2,267,091	-		DDA3937_RS10045	0.19	-2.1
2,267,091	-		DDA3937_RS10045	0.19	-1.1
2,267,121	+		DDA3937_RS10045	0.26	-0.0