Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09870

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,226,989	+				+0.9
2,226,989	+				+1.6
2,227,003	+				+0.4
2,227,003	+				+0.6
2,227,044	+				-1.0
2,227,123	+				-1.6
2,227,124	-				+1.6
2,227,124	-				+0.7
2,227,124	-				+2.1
2,227,135	+		DDA3937_RS09865	0.10	+0.5
2,227,135	+		DDA3937_RS09865	0.10	-0.4
2,227,136	-		DDA3937_RS09865	0.10	+2.4
2,227,136	-		DDA3937_RS09865	0.10	-2.5
2,227,136	-		DDA3937_RS09865	0.10	-2.3
2,227,144	+		DDA3937_RS09865	0.11	+1.2
2,227,144	+		DDA3937_RS09865	0.11	+1.4
2,227,144	+		DDA3937_RS09865	0.11	-1.3
2,227,144	+		DDA3937_RS09865	0.11	-0.0
2,227,144	+		DDA3937_RS09865	0.11	-2.0
2,227,144	+		DDA3937_RS09865	0.11	-0.2
2,227,145	-		DDA3937_RS09865	0.11	-0.9
2,227,145	-		DDA3937_RS09865	0.11	-2.8
2,227,145	-		DDA3937_RS09865	0.11	-1.0
2,227,145	-		DDA3937_RS09865	0.11	-0.1
2,227,164	+		DDA3937_RS09865	0.13	-1.0
2,227,164	+		DDA3937_RS09865	0.13	-0.2
2,227,165	-		DDA3937_RS09865	0.13	+0.6
2,227,165	-		DDA3937_RS09865	0.13	-1.2
2,227,165	-		DDA3937_RS09865	0.13	-2.4
2,227,186	+		DDA3937_RS09865	0.16	-1.6
2,227,186	+		DDA3937_RS09865	0.16	+2.1
2,227,187	-		DDA3937_RS09865	0.16	-2.1
2,227,187	-		DDA3937_RS09865	0.16	-1.4
2,227,188	+		DDA3937_RS09865	0.16	+0.7
2,227,188	+		DDA3937_RS09865	0.16	-1.0
2,227,219	+		DDA3937_RS09865	0.19	-1.2
2,227,219	+		DDA3937_RS09865	0.19	-2.5
2,227,219	+		DDA3937_RS09865	0.19	+2.1
2,227,220	-		DDA3937_RS09865	0.20	+1.3
2,227,300	+		DDA3937_RS09865	0.28	+0.6
2,227,300	+		DDA3937_RS09865	0.28	+1.8
2,227,301	-		DDA3937_RS09865	0.29	-0.7
2,227,303	-		DDA3937_RS09865	0.29	-0.9
2,227,303	-		DDA3937_RS09865	0.29	+2.1
2,227,404	+		DDA3937_RS09865	0.40	+1.6
2,227,405	-		DDA3937_RS09865	0.40	+0.0
2,227,405	-		DDA3937_RS09865	0.40	+0.5
2,227,405	-		DDA3937_RS09865	0.40	-0.0
2,227,405	-		DDA3937_RS09865	0.40	-1.4
2,227,505	+		DDA3937_RS09865	0.51	+0.6
2,227,515	+		DDA3937_RS09865	0.52	+1.7
2,227,516	-		DDA3937_RS09865	0.53	+1.0
2,227,620	+		DDA3937_RS09865	0.64	-0.7
2,227,620	+		DDA3937_RS09865	0.64	+2.3
2,227,620	+		DDA3937_RS09865	0.64	-0.5
2,227,621	-		DDA3937_RS09865	0.64	-1.1
2,227,621	-		DDA3937_RS09865	0.64	-1.2
2,227,621	-		DDA3937_RS09865	0.64	-2.4
2,227,621	-		DDA3937_RS09865	0.64	-1.1
2,227,621	-		DDA3937_RS09865	0.64	-0.3
2,227,621	-		DDA3937_RS09865	0.64	-1.9
2,227,625	+		DDA3937_RS09865	0.65	-0.4
2,227,625	+		DDA3937_RS09865	0.65	+0.2
2,227,626	-		DDA3937_RS09865	0.65	-0.4
2,227,626	-		DDA3937_RS09865	0.65	-0.0
2,227,626	-		DDA3937_RS09865	0.65	-1.2
2,227,626	-		DDA3937_RS09865	0.65	-0.6
2,227,733	-		DDA3937_RS09865	0.77	-2.2
2,227,733	-		DDA3937_RS09865	0.77	-2.5
2,227,783	+		DDA3937_RS09865	0.82	-0.4
2,227,783	+		DDA3937_RS09865	0.82	-1.9
2,227,784	-		DDA3937_RS09865	0.82	+0.6
2,227,784	-		DDA3937_RS09865	0.82	-0.7
2,227,840	+		DDA3937_RS09865	0.89	+1.6
2,227,840	+		DDA3937_RS09865	0.89	+1.1
2,227,867	+				-1.2
2,227,867	+				-2.1
2,227,868	-				-0.7
2,227,868	-				-0.4
2,227,868	-				-1.0
2,228,043	+				-1.0
2,228,070	+		DDA3937_RS09870	0.11	+1.9
2,228,070	+		DDA3937_RS09870	0.11	-1.7
2,228,070	+		DDA3937_RS09870	0.11	-2.1
2,228,071	-		DDA3937_RS09870	0.11	+0.5
2,228,071	-		DDA3937_RS09870	0.11	-1.4
2,228,071	-		DDA3937_RS09870	0.11	-1.2
2,228,105	-		DDA3937_RS09870	0.16	-1.6
2,228,285	+		DDA3937_RS09870	0.39	+0.2
2,228,414	+		DDA3937_RS09870	0.55	-1.7
2,228,493	+		DDA3937_RS09870	0.66	-2.7
2,228,494	-		DDA3937_RS09870	0.66	-1.4
2,228,510	+		DDA3937_RS09870	0.68	-0.6
2,228,510	+		DDA3937_RS09870	0.68	-0.4
2,228,510	+		DDA3937_RS09870	0.68	-0.7
2,228,510	+				-0.0
2,228,511	-		DDA3937_RS09870	0.68	-1.7
2,228,511	-		DDA3937_RS09870	0.68	-1.4
2,228,511	-		DDA3937_RS09870	0.68	-1.7
2,228,517	+		DDA3937_RS09870	0.69	-1.4
2,228,517	+		DDA3937_RS09870	0.69	-0.0
2,228,517	+		DDA3937_RS09870	0.69	+2.1
2,228,517	+		DDA3937_RS09870	0.69	+3.4
2,228,517	+		DDA3937_RS09870	0.69	-2.2
2,228,517	+		DDA3937_RS09870	0.69	+0.6
2,228,517	+		DDA3937_RS09870	0.69	-1.7
2,228,518	-		DDA3937_RS09870	0.69	+4.1
2,228,518	-		DDA3937_RS09870	0.69	-2.3
2,228,518	-		DDA3937_RS09870	0.69	-2.2
2,228,518	-		DDA3937_RS09870	0.69	-1.3
2,228,761	+				+2.6
2,228,795	+				-0.7
2,228,807	+				-2.4
2,228,808	-				-2.5
2,228,825	+				-0.7
2,228,826	-				+0.9
2,228,826	-				-0.7
2,228,826	-				-1.2
2,228,878	+				+0.5
2,228,882	+				+1.6
2,228,882	+				-1.1
2,228,965	+				-0.7
2,228,965	+				+0.9
2,228,999	+		DDA3937_RS09875	0.11	-0.9
2,229,192	+		DDA3937_RS09875	0.35	+1.4
2,229,192	+		DDA3937_RS09875	0.35	-1.9
2,229,195	+		DDA3937_RS09875	0.35	+0.5
2,229,195	+		DDA3937_RS09875	0.35	-2.5
2,229,195	+		DDA3937_RS09875	0.35	+2.0
2,229,361	+		DDA3937_RS09875	0.56	-0.1
2,229,361	+		DDA3937_RS09875	0.56	+0.7
2,229,387	+		DDA3937_RS09875	0.59	-0.5
2,229,387	+		DDA3937_RS09875	0.59	-0.2
2,229,412	+		DDA3937_RS09875	0.62	-1.0
2,229,487	+		DDA3937_RS09875	0.71	+0.3
2,229,512	+		DDA3937_RS09875	0.74	+1.0
2,229,553	+		DDA3937_RS09875	0.79	+1.7
2,229,553	+		DDA3937_RS09875	0.79	-0.4
2,229,553	+		DDA3937_RS09875	0.79	-0.2
2,229,616	+		DDA3937_RS09875	0.87	-3.3
2,229,639	+				+0.4