Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09665

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,180,030	+		DDA3937_RS09660	0.41	+1.6
2,180,059	+		DDA3937_RS09660	0.44	-1.2
2,180,059	+		DDA3937_RS09660	0.44	-1.4
2,180,059	+		DDA3937_RS09660	0.44	-1.0
2,180,060	-		DDA3937_RS09660	0.44	+1.0
2,180,060	-		DDA3937_RS09660	0.44	-2.0
2,180,060	-		DDA3937_RS09660	0.44	-1.8
2,180,060	-		DDA3937_RS09660	0.44	-1.8
2,180,060	-		DDA3937_RS09660	0.44	-1.0
2,180,090	+		DDA3937_RS09660	0.48	-3.2
2,180,090	+		DDA3937_RS09660	0.48	-2.9
2,180,091	-		DDA3937_RS09660	0.48	-0.1
2,180,124	+		DDA3937_RS09660	0.52	+1.0
2,180,124	+		DDA3937_RS09660	0.52	-0.6
2,180,124	+		DDA3937_RS09660	0.52	-1.4
2,180,124	+		DDA3937_RS09660	0.52	-1.2
2,180,124	+		DDA3937_RS09660	0.52	-2.0
2,180,124	+		DDA3937_RS09660	0.52	+0.1
2,180,124	+		DDA3937_RS09660	0.52	-0.8
2,180,125	-		DDA3937_RS09660	0.52	-0.9
2,180,125	-		DDA3937_RS09660	0.52	+2.3
2,180,125	-		DDA3937_RS09660	0.52	-0.8
2,180,125	-		DDA3937_RS09660	0.52	-1.9
2,180,125	-		DDA3937_RS09660	0.52	+2.2
2,180,125	-		DDA3937_RS09660	0.52	+1.6
2,180,125	-		DDA3937_RS09660	0.52	-1.6
2,180,125	-		DDA3937_RS09660	0.52	-0.1
2,180,184	+		DDA3937_RS09660	0.59	+0.1
2,180,201	+		DDA3937_RS09660	0.61	-1.1
2,180,201	+		DDA3937_RS09660	0.61	+1.1
2,180,221	+		DDA3937_RS09660	0.63	+0.7
2,180,222	-		DDA3937_RS09660	0.63	+1.1
2,180,267	-		DDA3937_RS09660	0.69	+0.4
2,180,327	+		DDA3937_RS09660	0.76	-1.7
2,180,341	+		DDA3937_RS09660	0.77	+1.6
2,180,342	-		DDA3937_RS09660	0.77	-1.4
2,180,342	-		DDA3937_RS09660	0.77	-0.4
2,180,347	-		DDA3937_RS09660	0.78	-1.2
2,180,368	+		DDA3937_RS09660	0.80	-1.2
2,180,383	-		DDA3937_RS09660	0.82	+2.0
2,180,397	-		DDA3937_RS09660	0.84	-1.0
2,180,441	-		DDA3937_RS09660	0.89	-0.7
2,180,464	-				-1.0
2,180,464	-				-2.2
2,180,507	+				-1.5
2,180,508	-				-0.8
2,180,508	-				-1.0
2,180,510	+				-0.0
2,180,539	+				-0.1
2,180,550	+				-1.3
2,180,571	+				-2.3
2,180,574	+				+0.6
2,180,574	+				+0.6
2,180,625	-				-2.7
2,180,745	+				+1.3
2,180,756	-				-1.6
2,180,779	+				+3.2
2,180,782	-				-1.8
2,180,817	-				+0.1
2,180,838	+				-1.2
2,180,846	+				+1.3
2,180,847	-				-1.7
2,180,849	-				-1.9
2,180,850	+				-0.8
2,180,853	+				+0.6
2,180,868	+				-1.6
2,180,878	+				-2.2
2,180,908	+				+1.6
2,180,927	+				-0.0
2,180,933	+				+2.3
2,180,933	+				-1.0
2,180,953	+				-1.6
2,181,017	+				+1.0
2,181,030	+				-1.6
2,181,031	-				+1.7
2,181,035	+				-1.9
2,181,036	-				+2.0
2,181,036	-				-0.8
2,181,076	-				-0.0
2,181,141	+				-1.8
2,181,198	+				+1.9
2,181,198	+				-0.4
2,181,199	-				-0.3
2,181,206	+		DDA3937_RS09665	0.10	-0.0
2,181,207	-		DDA3937_RS09665	0.10	-2.2
2,181,219	+		DDA3937_RS09665	0.11	+2.6
2,181,219	+		DDA3937_RS09665	0.11	+2.6
2,181,219	+		DDA3937_RS09665	0.11	-2.9
2,181,219	+		DDA3937_RS09665	0.11	-1.0
2,181,220	-		DDA3937_RS09665	0.11	-1.2
2,181,220	-		DDA3937_RS09665	0.11	+1.6
2,181,220	-		DDA3937_RS09665	0.11	+0.7
2,181,220	-		DDA3937_RS09665	0.11	-0.0
2,181,220	-		DDA3937_RS09665	0.11	-1.8
2,181,222	+		DDA3937_RS09665	0.11	-2.1
2,181,285	+		DDA3937_RS09665	0.15	-3.0
2,181,286	-		DDA3937_RS09665	0.15	-0.8
2,181,446	+		DDA3937_RS09665	0.24	-3.2
2,181,446	+		DDA3937_RS09665	0.24	+1.4
2,181,447	-		DDA3937_RS09665	0.24	+1.5
2,181,514	-		DDA3937_RS09665	0.27	-1.2
2,181,613	-				-0.0
2,181,613	-		DDA3937_RS09665	0.33	+1.4
2,181,652	-		DDA3937_RS09665	0.35	+0.9
2,181,652	-		DDA3937_RS09665	0.35	+0.3
2,181,652	-		DDA3937_RS09665	0.35	+0.6
2,181,652	-		DDA3937_RS09665	0.35	-2.6
2,181,679	+		DDA3937_RS09665	0.37	-3.0
2,181,680	-		DDA3937_RS09665	0.37	-2.4
2,181,680	-		DDA3937_RS09665	0.37	+1.9
2,181,681	+		DDA3937_RS09665	0.37	-1.8
2,181,681	+		DDA3937_RS09665	0.37	+0.4
2,181,681	+		DDA3937_RS09665	0.37	-2.0
2,181,681	+		DDA3937_RS09665	0.37	+1.0
2,181,681	+		DDA3937_RS09665	0.37	-2.5
2,181,681	+		DDA3937_RS09665	0.37	-0.2
2,181,681	+		DDA3937_RS09665	0.37	+2.8
2,181,681	+		DDA3937_RS09665	0.37	+2.0
2,181,681	+		DDA3937_RS09665	0.37	-1.2
2,181,681	+		DDA3937_RS09665	0.37	-1.6
2,181,682	-		DDA3937_RS09665	0.37	+0.7
2,181,682	-		DDA3937_RS09665	0.37	-2.0
2,181,682	-		DDA3937_RS09665	0.37	+0.7
2,181,682	-		DDA3937_RS09665	0.37	-0.8
2,181,682	-		DDA3937_RS09665	0.37	+0.2
2,181,682	-		DDA3937_RS09665	0.37	-0.0
2,181,682	-		DDA3937_RS09665	0.37	+1.1
2,181,682	-		DDA3937_RS09665	0.37	+0.5
2,181,682	-		DDA3937_RS09665	0.37	+0.6
2,181,683	+		DDA3937_RS09665	0.37	-0.9
2,181,683	+		DDA3937_RS09665	0.37	-1.2
2,181,683	+		DDA3937_RS09665	0.37	-3.1
2,181,683	+		DDA3937_RS09665	0.37	+0.4
2,181,683	+		DDA3937_RS09665	0.37	+3.6
2,181,683	+		DDA3937_RS09665	0.37	+1.3
2,181,683	+		DDA3937_RS09665	0.37	+2.1
2,181,683	+		DDA3937_RS09665	0.37	+0.9
2,181,684	-		DDA3937_RS09665	0.37	+1.1
2,181,684	-		DDA3937_RS09665	0.37	-1.2
2,181,684	-		DDA3937_RS09665	0.37	-1.2
2,181,684	-		DDA3937_RS09665	0.37	+0.6
2,181,684	-		DDA3937_RS09665	0.37	-2.2
2,181,684	-		DDA3937_RS09665	0.37	+0.7
2,181,684	-		DDA3937_RS09665	0.37	-0.1
2,181,701	-		DDA3937_RS09665	0.38	+2.2
2,181,771	+		DDA3937_RS09665	0.42	-1.9
2,181,771	+		DDA3937_RS09665	0.42	-2.1
2,181,771	+		DDA3937_RS09665	0.42	+1.7
2,181,771	+		DDA3937_RS09665	0.42	+2.0
2,181,824	-		DDA3937_RS09665	0.45	+0.2
2,181,920	+		DDA3937_RS09665	0.51	+0.7
2,181,920	+		DDA3937_RS09665	0.51	+0.2
2,182,022	+		DDA3937_RS09665	0.56	+0.2
2,182,054	-		DDA3937_RS09665	0.58	-1.1
2,182,169	-		DDA3937_RS09665	0.65	-0.0
2,182,169	-		DDA3937_RS09665	0.65	-1.0
2,182,182	+		DDA3937_RS09665	0.65	+1.7
2,182,182	+		DDA3937_RS09665	0.65	-0.2
2,182,182	+		DDA3937_RS09665	0.65	-0.2
2,182,183	-		DDA3937_RS09665	0.65	-1.0
2,182,193	+		DDA3937_RS09665	0.66	+2.5
2,182,194	-				-0.8
2,182,260	+		DDA3937_RS09665	0.70	+1.8
2,182,260	+		DDA3937_RS09665	0.70	+0.5
2,182,260	+		DDA3937_RS09665	0.70	+0.8
2,182,260	+		DDA3937_RS09665	0.70	+1.4
2,182,260	+		DDA3937_RS09665	0.70	-1.9
2,182,260	+		DDA3937_RS09665	0.70	+2.6
2,182,260	+		DDA3937_RS09665	0.70	+2.4
2,182,260	+		DDA3937_RS09665	0.70	-0.8
2,182,261	-		DDA3937_RS09665	0.70	-1.2
2,182,261	-		DDA3937_RS09665	0.70	+1.6
2,182,261	-		DDA3937_RS09665	0.70	-0.8
2,182,288	+		DDA3937_RS09665	0.71	+1.4
2,182,290	+		DDA3937_RS09665	0.71	+0.0
2,182,290	+		DDA3937_RS09665	0.71	+0.3
2,182,290	+		DDA3937_RS09665	0.71	-1.8
2,182,291	-		DDA3937_RS09665	0.72	-1.6
2,182,291	-		DDA3937_RS09665	0.72	-0.7
2,182,291	-		DDA3937_RS09665	0.72	-0.5
2,182,291	-		DDA3937_RS09665	0.72	+0.5
2,182,291	-		DDA3937_RS09665	0.72	-1.8
2,182,404	+		DDA3937_RS09665	0.78	-2.1
2,182,543	-		DDA3937_RS09665	0.86	-0.6
2,182,543	-		DDA3937_RS09665	0.86	+0.8
2,182,543	-		DDA3937_RS09665	0.86	-1.9
2,182,566	+		DDA3937_RS09665	0.87	-1.0
2,182,566	+		DDA3937_RS09665	0.87	+1.9
2,182,566	+		DDA3937_RS09665	0.87	-1.5
2,182,651	+				-0.4
2,182,651	+				-0.4
2,182,651	+				-1.9
2,182,651	+				+1.1
2,182,651	+				-1.2
2,182,651	+				-0.1
2,182,651	+				-0.2
2,182,651	+				+1.8
2,182,651	+				-0.0
2,182,652	-				-0.6
2,182,652	-				-1.1
2,182,652	-				+0.2
2,182,652	-				-0.8
2,182,656	-				-1.6
2,182,656	-				-2.0
2,182,656	-				+0.4
2,182,777	+				+1.2
2,182,830	+				+1.7
2,182,830	+				-1.3
2,182,830	+				-1.0
2,182,830	+				+1.2
2,182,830	+				+1.3
2,182,830	+				-2.8
2,182,830	+				-2.0
2,182,831	-				+1.1
2,182,831	-				-1.0
2,182,831	-				+2.4
2,182,869	+				+0.3
2,182,870	-				-2.5
2,182,897	+				+0.7
2,182,898	-				-3.4
2,182,898	-				-1.2
2,182,906	+				-2.3
2,182,906	+				+0.6
2,182,906	+				+1.0
2,182,907	-				-1.8
2,182,921	+				+2.1
2,182,965	-				-0.1
2,183,025	+				+1.8
2,183,025	+				-1.4
2,183,041	+				+0.1
2,183,041	+				+1.9
2,183,041	+				-1.4
2,183,043	+				-0.8
2,183,043	+				+0.3
2,183,044	-				-2.4
2,183,257	+		DDA3937_RS09670	0.18	+1.6
2,183,259	+		DDA3937_RS09670	0.18	+0.7
2,183,259	+		DDA3937_RS09670	0.18	-0.6
2,183,267	+		DDA3937_RS09670	0.19	+3.7
2,183,267	+		DDA3937_RS09670	0.19	+2.3
2,183,344	+		DDA3937_RS09670	0.26	+2.6
2,183,344	+		DDA3937_RS09670	0.26	-0.8
2,183,491	+		DDA3937_RS09670	0.40	+0.4
2,183,491	+		DDA3937_RS09670	0.40	+1.2
2,183,500	+				+2.4
2,183,567	+		DDA3937_RS09670	0.47	+2.0
2,183,570	+		DDA3937_RS09670	0.47	-0.9
2,183,578	+		DDA3937_RS09670	0.48	-1.4
2,183,578	+		DDA3937_RS09670	0.48	+1.9
2,183,633	-		DDA3937_RS09670	0.53	-0.3
2,183,654	+		DDA3937_RS09670	0.55	-1.6
2,183,679	+		DDA3937_RS09670	0.57	+2.3
2,183,737	+		DDA3937_RS09670	0.62	+1.7
2,183,737	+		DDA3937_RS09670	0.62	+1.2