Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09165

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,058,117	+				+0.9
2,058,117	+				-0.8
2,058,153	+				-2.4
2,058,153	+				+1.1
2,058,153	+				+0.5
2,058,153	+				-1.8
2,058,154	-				-1.8
2,058,154	-				-0.1
2,058,190	+				-0.7
2,058,191	-				-0.5
2,058,191	-				+1.8
2,058,239	+				+5.2
2,058,239	+				+0.6
2,058,246	+				-1.5
2,058,355	+				-0.1
2,058,452	+		DDA3937_RS09160	0.28	-1.1
2,058,453	-		DDA3937_RS09160	0.28	-1.8
2,058,453	-		DDA3937_RS09160	0.28	-1.3
2,058,465	+				+0.5
2,058,465	+		DDA3937_RS09160	0.30	+2.9
2,058,465	+		DDA3937_RS09160	0.30	+1.2
2,058,466	-		DDA3937_RS09160	0.30	-3.3
2,058,507	+		DDA3937_RS09160	0.36	-1.8
2,058,507	+		DDA3937_RS09160	0.36	-1.6
2,058,580	+		DDA3937_RS09160	0.46	-0.0
2,058,617	+		DDA3937_RS09160	0.52	-2.5
2,058,648	+		DDA3937_RS09160	0.56	-0.5
2,058,648	+		DDA3937_RS09160	0.56	-1.9
2,058,649	-		DDA3937_RS09160	0.56	-0.1
2,058,715	+		DDA3937_RS09160	0.66	-2.8
2,058,715	+		DDA3937_RS09160	0.66	-2.9
2,058,715	+		DDA3937_RS09160	0.66	+1.2
2,058,715	+		DDA3937_RS09160	0.66	-2.9
2,058,981	+				-1.8
2,059,033	-				-1.0
2,059,033	-				+1.1
2,059,091	-				+2.6
2,059,091	-				-1.1
2,059,105	-				-1.5
2,059,132	+				-0.5
2,059,132	+				+1.2
2,059,132	+				-0.5
2,059,133	-				-1.5
2,059,136	+				+2.4
2,059,136	+				-0.4
2,059,136	+				-1.1
2,059,136	+				+0.7
2,059,136	+				-1.5
2,059,136	+				-0.3
2,059,136	+				-1.1
2,059,136	+				+3.9
2,059,136	+				-1.6
2,059,136	+				+1.7
2,059,136	+				-1.8
2,059,136	+				-2.9
2,059,136	+				-0.3
2,059,137	-				-1.5
2,059,137	-				+2.1
2,059,137	-				-1.3
2,059,137	-				-1.3
2,059,137	-				-2.0
2,059,137	-				-1.1
2,059,137	-				+0.6
2,059,137	-				-1.2
2,059,137	-				-1.1
2,059,137	-				+0.5
2,059,137	-				-0.1
2,059,137	-				+0.5
2,059,137	-				-1.1
2,059,137	-				+1.1
2,059,137	-				+1.2
2,059,137	-				-0.2
2,059,137	-				-1.7
2,059,211	+		DDA3937_RS09165	0.13	+0.8
2,059,211	+		DDA3937_RS09165	0.13	+0.7
2,059,211	+		DDA3937_RS09165	0.13	-1.7
2,059,211	+		DDA3937_RS09165	0.13	-1.8
2,059,211	+		DDA3937_RS09165	0.13	-1.1
2,059,212	-		DDA3937_RS09165	0.14	-1.5
2,059,212	-		DDA3937_RS09165	0.14	-2.0
2,059,212	-		DDA3937_RS09165	0.14	+0.6
2,059,212	-		DDA3937_RS09165	0.14	-0.3
2,059,212	-		DDA3937_RS09165	0.14	+1.3
2,059,212	-		DDA3937_RS09165	0.14	-2.7
2,059,212	-		DDA3937_RS09165	0.14	+0.8
2,059,212	-		DDA3937_RS09165	0.14	+0.5
2,059,212	-		DDA3937_RS09165	0.14	+0.4
2,059,212	-		DDA3937_RS09165	0.14	+1.9
2,059,212	-		DDA3937_RS09165	0.14	+2.4
2,059,215	+		DDA3937_RS09165	0.14	+0.5
2,059,215	+		DDA3937_RS09165	0.14	+0.7
2,059,216	-		DDA3937_RS09165	0.14	-0.8
2,059,216	-		DDA3937_RS09165	0.14	-0.1
2,059,216	-		DDA3937_RS09165	0.14	-0.8
2,059,244	+		DDA3937_RS09165	0.16	+0.2
2,059,273	+		DDA3937_RS09165	0.19	+2.2
2,059,306	+		DDA3937_RS09165	0.21	+0.8
2,059,360	+		DDA3937_RS09165	0.26	-1.1
2,059,361	-		DDA3937_RS09165	0.26	+0.1
2,059,361	-		DDA3937_RS09165	0.26	+3.3
2,059,426	+		DDA3937_RS09165	0.32	-1.7
2,059,427	-		DDA3937_RS09165	0.32	+2.0
2,059,535	-		DDA3937_RS09165	0.41	+1.3
2,059,593	+		DDA3937_RS09165	0.46	-1.3
2,059,593	+		DDA3937_RS09165	0.46	+2.2
2,059,593	+		DDA3937_RS09165	0.46	+1.4
2,059,603	+		DDA3937_RS09165	0.47	-0.2
2,059,651	+		DDA3937_RS09165	0.51	-1.3
2,059,651	+		DDA3937_RS09165	0.51	-0.9
2,059,651	+		DDA3937_RS09165	0.51	-0.7
2,059,651	+		DDA3937_RS09165	0.51	-2.1
2,059,654	+		DDA3937_RS09165	0.51	-0.6
2,059,654	+		DDA3937_RS09165	0.51	+0.9
2,059,654	+		DDA3937_RS09165	0.51	+0.1
2,059,654	+		DDA3937_RS09165	0.51	-1.7
2,059,655	-		DDA3937_RS09165	0.51	-2.0
2,059,655	-		DDA3937_RS09165	0.51	-4.0
2,059,655	-		DDA3937_RS09165	0.51	+1.5
2,059,655	-		DDA3937_RS09165	0.51	+1.5
2,059,703	+		DDA3937_RS09165	0.55	+0.3
2,059,703	+		DDA3937_RS09165	0.55	+1.0
2,059,703	+		DDA3937_RS09165	0.55	+0.1
2,059,703	+		DDA3937_RS09165	0.55	+1.4
2,059,703	+		DDA3937_RS09165	0.55	-0.4
2,059,703	+		DDA3937_RS09165	0.55	-2.2
2,059,703	+		DDA3937_RS09165	0.55	+1.7
2,059,703	+		DDA3937_RS09165	0.55	+3.1
2,059,704	-		DDA3937_RS09165	0.55	-1.3
2,059,704	-		DDA3937_RS09165	0.55	+2.0
2,059,704	-		DDA3937_RS09165	0.55	-0.1
2,059,704	-		DDA3937_RS09165	0.55	+2.2
2,059,704	-		DDA3937_RS09165	0.55	-1.3
2,059,704	-		DDA3937_RS09165	0.55	-0.1
2,059,704	-		DDA3937_RS09165	0.55	-0.8
2,059,704	-		DDA3937_RS09165	0.55	+0.8
2,059,769	+		DDA3937_RS09165	0.61	-0.9
2,059,769	+		DDA3937_RS09165	0.61	-0.8
2,059,770	-		DDA3937_RS09165	0.61	-2.0
2,059,770	-		DDA3937_RS09165	0.61	-3.0
2,059,811	+		DDA3937_RS09165	0.64	+1.7
2,059,811	+		DDA3937_RS09165	0.64	+1.6
2,059,811	+		DDA3937_RS09165	0.64	+4.1
2,059,811	+		DDA3937_RS09165	0.64	+1.1
2,059,811	+		DDA3937_RS09165	0.64	-3.7
2,059,812	-		DDA3937_RS09165	0.64	+1.1
2,059,812	-		DDA3937_RS09165	0.64	-3.0
2,059,830	+		DDA3937_RS09165	0.66	-3.2
2,059,831	-		DDA3937_RS09165	0.66	+0.5
2,059,831	-		DDA3937_RS09165	0.66	-0.9
2,059,864	+		DDA3937_RS09165	0.69	-2.3
2,059,932	+		DDA3937_RS09165	0.74	+0.9
2,059,951	+		DDA3937_RS09165	0.76	+1.2
2,059,951	+		DDA3937_RS09165	0.76	-2.3
2,059,952	-		DDA3937_RS09165	0.76	-3.1
2,059,969	+		DDA3937_RS09165	0.78	-3.3
2,060,362	+				-1.1
2,060,363	-				-2.7
2,060,383	+				-0.6
2,060,383	+				-2.4
2,060,383	+				-1.7
2,060,383	+				-0.1
2,060,383	+				-0.9
2,060,383	+				-0.7
2,060,383	+				-3.3
2,060,383	+				-0.1
2,060,384	-				-0.1
2,060,384	-				-2.2
2,060,384	-				+2.7
2,060,384	-				+0.9
2,060,384	-				-0.1
2,060,502	-				-1.0
2,060,507	+				-0.5
2,060,507	+				+1.0
2,060,508	-				-0.1
2,060,543	+				+1.4
2,060,544	-				-1.7
2,060,550	+				-2.7
2,060,576	+				+1.2
2,060,576	+				-2.1
2,060,577	-				+1.0
2,060,577	-				-1.7
2,060,599	+				-4.0
2,060,599	+				-2.5
2,060,600	-				-2.9
2,060,639	+		DDA3937_RS09170	0.13	+0.5
2,060,711	+		DDA3937_RS09170	0.34	+1.1
2,060,711	+		DDA3937_RS09170	0.34	+2.2
2,060,712	-		DDA3937_RS09170	0.34	-1.4
2,060,765	-		DDA3937_RS09170	0.50	-2.7
2,060,765	-		DDA3937_RS09170	0.50	-4.0
2,060,794	+		DDA3937_RS09170	0.58	+2.0
2,060,872	+		DDA3937_RS09170	0.81	+1.0
2,060,873	-		DDA3937_RS09170	0.81	-1.7
2,060,927	+				-0.1
2,061,029	-				+0.5
2,061,041	+				+1.5
2,061,041	+				-2.1
2,061,041	+				+0.6
2,061,041	+				-0.4
2,061,088	+				+0.1
2,061,172	+		DDA3937_RS09175	0.10	+0.5
2,061,172	+		DDA3937_RS09175	0.10	+0.3
2,061,173	-		DDA3937_RS09175	0.10	+1.0
2,061,173	-		DDA3937_RS09175	0.10	+1.2
2,061,173	-		DDA3937_RS09175	0.10	-2.2
2,061,173	-		DDA3937_RS09175	0.10	+0.7
2,061,173	-		DDA3937_RS09175	0.10	-2.3
2,061,173	-		DDA3937_RS09175	0.10	-0.2