Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09045

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,036,384	+				-0.5
2,036,384	+				+0.7
2,036,384	+				+2.2
2,036,384	+				-2.4
2,036,387	+				-0.8
2,036,403	+				+0.0
2,036,483	-				-1.3
2,036,508	+				-1.6
2,036,543	+				-1.5
2,036,543	+				-1.0
2,036,543	+				+0.5
2,036,543	+				-2.0
2,036,543	+				+1.3
2,036,544	-				-2.7
2,036,544	-				+0.3
2,036,544	-				-0.1
2,036,544	-				-0.7
2,036,544	-				-0.1
2,036,545	+				+0.9
2,036,545	+				-0.8
2,036,545	+				-2.0
2,036,545	+				-2.5
2,036,545	+				-1.8
2,036,546	-				-1.8
2,036,547	+				+1.3
2,036,547	+				-1.8
2,036,547	+				-0.9
2,036,547	+				-1.3
2,036,547	+				-0.8
2,036,547	+				-1.4
2,036,548	-				-1.3
2,036,548	-				-1.1
2,036,548	-				-0.8
2,036,548	-				-4.0
2,036,556	-				+1.4
2,036,570	-				+2.5
2,036,570	-				-0.9
2,036,600	-				-0.7
2,036,600	-				-3.0
2,036,617	-				-1.5
2,036,617	-				+0.2
2,036,629	-				-1.7
2,036,631	+				-3.0
2,036,652	+				+0.2
2,036,652	+				-0.7
2,036,653	-				-2.2
2,036,653	-				-2.7
2,036,660	-				-1.8
2,036,690	+				-2.7
2,036,690	+				-0.1
2,036,691	-				-2.0
2,036,692	+				+0.3
2,036,692	+				-1.5
2,036,692	+				-2.2
2,036,692	+				-1.3
2,036,692	+				-1.4
2,036,692	+				+0.3
2,036,692	+				+0.7
2,036,693	-				+2.8
2,036,693	-				-0.1
2,036,693	-				+1.5
2,036,693	-				-2.1
2,036,710	+				+1.2
2,036,711	-				+0.1
2,036,725	+				-1.5
2,036,763	+		DDA3937_RS09045	0.14	-0.5
2,036,777	+		DDA3937_RS09045	0.17	+0.8
2,036,777	+		DDA3937_RS09045	0.17	+1.3
2,036,777	+		DDA3937_RS09045	0.17	-0.5
2,036,831	+		DDA3937_RS09045	0.27	+2.0
2,036,831	+		DDA3937_RS09045	0.27	-4.4
2,036,831	+		DDA3937_RS09045	0.27	-2.9
2,036,861	+		DDA3937_RS09045	0.33	-0.2
2,036,862	-		DDA3937_RS09045	0.33	-0.5
2,036,862	-		DDA3937_RS09045	0.33	+0.5
2,036,862	-		DDA3937_RS09045	0.33	-2.0
2,036,862	-		DDA3937_RS09045	0.33	-1.3
2,036,862	-		DDA3937_RS09045	0.33	+0.5
2,036,862	-		DDA3937_RS09045	0.33	-2.8
2,036,891	+		DDA3937_RS09045	0.39	-1.3
2,036,892	-		DDA3937_RS09045	0.39	-2.4
2,036,901	+		DDA3937_RS09045	0.41	-1.3
2,036,902	-		DDA3937_RS09045	0.41	-0.4
2,036,902	-		DDA3937_RS09045	0.41	-0.6
2,036,902	-		DDA3937_RS09045	0.41	-2.5
2,036,902	-		DDA3937_RS09045	0.41	+1.2
2,036,935	+		DDA3937_RS09045	0.47	+3.2
2,036,935	+		DDA3937_RS09045	0.47	-0.3
2,036,960	+		DDA3937_RS09045	0.52	-2.3
2,036,960	+		DDA3937_RS09045	0.52	+1.1
2,036,961	-				-1.3
2,036,961	-		DDA3937_RS09045	0.52	-3.5
2,036,964	+		DDA3937_RS09045	0.53	-0.5
2,036,965	-		DDA3937_RS09045	0.53	-0.2
2,036,986	-		DDA3937_RS09045	0.57	+0.5
2,037,152	+		DDA3937_RS09045	0.89	-2.1
2,037,152	+		DDA3937_RS09045	0.89	+0.3
2,037,152	+		DDA3937_RS09045	0.89	+2.1
2,037,152	+		DDA3937_RS09045	0.89	-1.9
2,037,152	+		DDA3937_RS09045	0.89	-2.6
2,037,152	+		DDA3937_RS09045	0.89	+1.7
2,037,152	+		DDA3937_RS09045	0.89	-1.7
2,037,152	+		DDA3937_RS09045	0.89	+0.9
2,037,152	+		DDA3937_RS09045	0.89	-1.3
2,037,152	+		DDA3937_RS09045	0.89	-1.5
2,037,153	-		DDA3937_RS09045	0.89	-1.0
2,037,153	-		DDA3937_RS09045	0.89	-0.4
2,037,153	-		DDA3937_RS09045	0.89	-0.5
2,037,153	-		DDA3937_RS09045	0.89	-1.9
2,037,153	-		DDA3937_RS09045	0.89	-0.4
2,037,153	-		DDA3937_RS09045	0.89	+1.4
2,037,189	-				+1.1
2,037,206	-				+1.6
2,037,286	-				+1.0
2,037,286	-				-2.0
2,037,286	-				-2.0
2,037,286	-				-1.7
2,037,492	+		DDA3937_RS09050	0.13	+0.9
2,037,492	+		DDA3937_RS09050	0.13	-1.8
2,037,492	+		DDA3937_RS09050	0.13	-2.1
2,037,492	+		DDA3937_RS09050	0.13	-1.3
2,037,493	-		DDA3937_RS09050	0.13	-2.5
2,037,493	-		DDA3937_RS09050	0.13	-0.2
2,037,493	-		DDA3937_RS09050	0.13	+0.7
2,037,493	-		DDA3937_RS09050	0.13	-2.0
2,037,521	-		DDA3937_RS09050	0.15	-1.8
2,037,521	-		DDA3937_RS09050	0.15	-0.8
2,037,521	-		DDA3937_RS09050	0.15	+1.9
2,037,558	-		DDA3937_RS09050	0.17	+1.9
2,037,558	-		DDA3937_RS09050	0.17	-0.0
2,037,638	+		DDA3937_RS09050	0.22	-2.0
2,037,805	+		DDA3937_RS09050	0.32	+0.5
2,037,805	+		DDA3937_RS09050	0.32	-2.0
2,037,805	+		DDA3937_RS09050	0.32	-1.8
2,037,806	-				-0.5
2,037,806	-		DDA3937_RS09050	0.32	+1.0
2,037,806	-		DDA3937_RS09050	0.32	-2.1
2,037,806	-		DDA3937_RS09050	0.32	-1.1
2,037,806	-		DDA3937_RS09050	0.32	+2.2
2,037,830	+		DDA3937_RS09050	0.33	-0.6
2,037,831	-		DDA3937_RS09050	0.33	+2.7
2,037,831	-		DDA3937_RS09050	0.33	+0.3
2,037,831	-		DDA3937_RS09050	0.33	-0.4
2,037,831	-		DDA3937_RS09050	0.33	+0.1
2,037,838	+		DDA3937_RS09050	0.34	-1.8
2,037,838	+		DDA3937_RS09050	0.34	-0.8
2,037,838	+		DDA3937_RS09050	0.34	+0.9
2,037,838	+		DDA3937_RS09050	0.34	+0.3
2,037,838	+		DDA3937_RS09050	0.34	-1.8
2,037,838	+		DDA3937_RS09050	0.34	+1.5
2,037,838	+		DDA3937_RS09050	0.34	-0.5
2,037,839	-		DDA3937_RS09050	0.34	+0.2
2,037,839	-		DDA3937_RS09050	0.34	+1.5
2,037,839	-		DDA3937_RS09050	0.34	+0.0
2,037,839	-		DDA3937_RS09050	0.34	+0.3
2,037,839	-		DDA3937_RS09050	0.34	-0.8
2,037,839	-		DDA3937_RS09050	0.34	-2.2
2,037,839	-		DDA3937_RS09050	0.34	-2.3
2,037,839	-		DDA3937_RS09050	0.34	-2.4
2,037,839	-		DDA3937_RS09050	0.34	+4.3
2,037,839	-		DDA3937_RS09050	0.34	+2.3
2,037,839	-		DDA3937_RS09050	0.34	-1.3
2,037,840	+		DDA3937_RS09050	0.34	-2.5
2,037,841	-		DDA3937_RS09050	0.34	-1.1
2,037,894	+		DDA3937_RS09050	0.37	+5.7
2,037,895	-		DDA3937_RS09050	0.37	+0.8
2,037,954	+		DDA3937_RS09050	0.40	-2.3
2,037,954	+		DDA3937_RS09050	0.40	-0.5
2,037,955	-		DDA3937_RS09050	0.40	+2.7
2,037,955	-		DDA3937_RS09050	0.40	-1.7
2,038,040	-		DDA3937_RS09050	0.45	-2.6
2,038,046	-		DDA3937_RS09050	0.46	-0.5
2,038,046	-		DDA3937_RS09050	0.46	-2.1
2,038,057	+		DDA3937_RS09050	0.46	-0.6
2,038,058	-		DDA3937_RS09050	0.47	+3.1
2,038,110	-		DDA3937_RS09050	0.50	-0.8
2,038,169	+		DDA3937_RS09050	0.53	-1.7
2,038,169	+		DDA3937_RS09050	0.53	-2.3
2,038,170	-		DDA3937_RS09050	0.53	-0.3
2,038,170	-		DDA3937_RS09050	0.53	-2.2