Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09005

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,028,242	+				-3.0
2,028,242	+				+0.0
2,028,242	+				-1.3
2,028,242	+				-0.8
2,028,243	-				-1.7
2,028,243	-				-0.8
2,028,249	+				+2.5
2,028,249	+				-1.5
2,028,250	-				-0.1
2,028,250	-				-0.5
2,028,260	+				-0.2
2,028,260	+				+0.5
2,028,261	-				-2.2
2,028,261	-				-1.1
2,028,280	+				+2.6
2,028,281	-				-2.4
2,028,289	-				-2.5
2,028,301	+				+0.2
2,028,328	-				-1.7
2,028,328	-				+0.5
2,028,328	-				-2.0
2,028,335	-				-0.8
2,028,335	-				-0.8
2,028,348	-				-1.1
2,028,348	-				+0.8
2,028,416	+				-1.7
2,028,416	+				-3.5
2,028,416	+				-0.2
2,028,417	-				+1.7
2,028,417	-				-1.1
2,028,417	-				-2.4
2,028,447	+		DDA3937_RS09000	0.14	-0.5
2,028,448	-		DDA3937_RS09000	0.14	-1.1
2,028,448	-		DDA3937_RS09000	0.14	-1.0
2,028,480	+				-0.1
2,028,503	+		DDA3937_RS09000	0.21	-1.7
2,028,504	-		DDA3937_RS09000	0.21	+0.3
2,028,589	+		DDA3937_RS09000	0.33	+1.5
2,028,590	-		DDA3937_RS09000	0.33	-2.5
2,028,644	+		DDA3937_RS09000	0.40	+0.8
2,028,645	-		DDA3937_RS09000	0.40	-2.0
2,028,679	+		DDA3937_RS09000	0.45	+3.7
2,028,679	+		DDA3937_RS09000	0.45	-1.1
2,028,679	+		DDA3937_RS09000	0.45	-1.1
2,028,679	+		DDA3937_RS09000	0.45	-3.0
2,028,679	+		DDA3937_RS09000	0.45	-2.9
2,028,680	-				-0.5
2,028,680	-		DDA3937_RS09000	0.45	-2.5
2,028,680	-		DDA3937_RS09000	0.45	+0.4
2,028,680	-		DDA3937_RS09000	0.45	-0.1
2,028,680	-		DDA3937_RS09000	0.45	-0.2
2,028,680	-		DDA3937_RS09000	0.45	+1.3
2,028,681	+		DDA3937_RS09000	0.45	+0.8
2,028,681	+		DDA3937_RS09000	0.45	-2.3
2,028,681	+		DDA3937_RS09000	0.45	+0.4
2,028,682	-		DDA3937_RS09000	0.45	-3.1
2,028,682	-		DDA3937_RS09000	0.45	-1.5
2,028,682	-		DDA3937_RS09000	0.45	-0.9
2,028,682	-		DDA3937_RS09000	0.45	+1.6
2,028,682	-		DDA3937_RS09000	0.45	-3.6
2,028,682	-		DDA3937_RS09000	0.45	+1.8
2,028,687	+		DDA3937_RS09000	0.46	+2.2
2,028,687	+		DDA3937_RS09000	0.46	-2.0
2,028,687	+		DDA3937_RS09000	0.46	+0.8
2,028,687	+		DDA3937_RS09000	0.46	-1.7
2,028,687	+		DDA3937_RS09000	0.46	-1.3
2,028,688	-		DDA3937_RS09000	0.46	-2.0
2,028,688	-		DDA3937_RS09000	0.46	-1.4
2,028,688	-		DDA3937_RS09000	0.46	-1.3
2,028,688	-		DDA3937_RS09000	0.46	+1.9
2,028,690	+		DDA3937_RS09000	0.46	+0.1
2,028,691	-		DDA3937_RS09000	0.46	-1.8
2,028,739	+		DDA3937_RS09000	0.53	-0.2
2,028,739	+		DDA3937_RS09000	0.53	+3.2
2,028,740	-		DDA3937_RS09000	0.53	-0.2
2,028,746	+		DDA3937_RS09000	0.54	+1.6
2,028,746	+		DDA3937_RS09000	0.54	-0.8
2,028,747	-		DDA3937_RS09000	0.54	+0.4
2,028,747	-		DDA3937_RS09000	0.54	-2.4
2,028,747	-		DDA3937_RS09000	0.54	-0.5
2,028,747	-		DDA3937_RS09000	0.54	-3.0
2,028,766	-		DDA3937_RS09000	0.56	+2.1
2,028,770	+				-0.5
2,028,770	+		DDA3937_RS09000	0.57	-2.9
2,028,770	+		DDA3937_RS09000	0.57	-1.6
2,028,770	+		DDA3937_RS09000	0.57	+2.6
2,028,770	+		DDA3937_RS09000	0.57	-2.0
2,028,771	-		DDA3937_RS09000	0.57	+0.9
2,028,771	-		DDA3937_RS09000	0.57	-2.3
2,028,771	-		DDA3937_RS09000	0.57	-0.7
2,028,771	-		DDA3937_RS09000	0.57	-3.0
2,028,774	+		DDA3937_RS09000	0.57	-1.0
2,028,775	-		DDA3937_RS09000	0.57	-1.8
2,028,799	+		DDA3937_RS09000	0.61	+0.3
2,028,813	+		DDA3937_RS09000	0.63	-2.1
2,028,813	+		DDA3937_RS09000	0.63	-1.8
2,028,815	+		DDA3937_RS09000	0.63	-0.5
2,028,815	+		DDA3937_RS09000	0.63	+0.2
2,028,815	+		DDA3937_RS09000	0.63	-2.3
2,028,815	+		DDA3937_RS09000	0.63	-0.3
2,028,815	+		DDA3937_RS09000	0.63	-1.3
2,028,815	+		DDA3937_RS09000	0.63	+0.7
2,028,815	+		DDA3937_RS09000	0.63	-2.6
2,028,815	+		DDA3937_RS09000	0.63	+0.6
2,028,815	+		DDA3937_RS09000	0.63	+0.5
2,028,815	+		DDA3937_RS09000	0.63	-1.8
2,028,815	+		DDA3937_RS09000	0.63	+2.3
2,028,815	+		DDA3937_RS09000	0.63	-1.0
2,028,815	+		DDA3937_RS09000	0.63	-2.3
2,028,815	+		DDA3937_RS09000	0.63	-0.5
2,028,815	+		DDA3937_RS09000	0.63	-2.0
2,028,816	-		DDA3937_RS09000	0.63	-2.3
2,028,816	-				+0.5
2,028,816	-		DDA3937_RS09000	0.63	+0.4
2,028,816	-		DDA3937_RS09000	0.63	+0.4
2,028,816	-		DDA3937_RS09000	0.63	+1.1
2,028,816	-		DDA3937_RS09000	0.63	-2.9
2,028,816	-		DDA3937_RS09000	0.63	-1.8
2,028,816	-		DDA3937_RS09000	0.63	-0.6
2,028,816	-		DDA3937_RS09000	0.63	-1.8
2,028,816	-		DDA3937_RS09000	0.63	+0.4
2,028,816	-		DDA3937_RS09000	0.63	-2.2
2,028,823	+		DDA3937_RS09000	0.64	-3.2
2,028,823	+				-0.8
2,028,823	+		DDA3937_RS09000	0.64	-1.8
2,028,824	-		DDA3937_RS09000	0.64	+1.5
2,028,824	-		DDA3937_RS09000	0.64	+2.7
2,028,824	-		DDA3937_RS09000	0.64	+1.7
2,028,824	-		DDA3937_RS09000	0.64	-1.1
2,028,824	-		DDA3937_RS09000	0.64	+1.5
2,028,825	+		DDA3937_RS09000	0.64	-1.5
2,028,825	+		DDA3937_RS09000	0.64	-4.3
2,028,950	-		DDA3937_RS09000	0.81	-0.9
2,028,967	-		DDA3937_RS09000	0.83	-2.0
2,028,994	+		DDA3937_RS09000	0.87	+0.5
2,028,995	-		DDA3937_RS09000	0.87	-2.4
2,029,042	-				-0.1
2,029,075	-				-0.5
2,029,081	+				-1.1
2,029,081	+				-0.3
2,029,081	+				-1.3
2,029,081	+				-2.0
2,029,082	-				-2.2
2,029,082	-				-2.7
2,029,082	-				-0.3
2,029,082	-				-0.5
2,029,082	-				+0.4
2,029,082	-				-0.2
2,029,087	-				+0.1
2,029,087	-				+2.9
2,029,115	-				+0.2
2,029,151	+				+0.3
2,029,152	-				-1.8
2,029,152	-				-2.1
2,029,153	+				+1.0
2,029,240	+				+0.5
2,029,241	-				+1.7
2,029,241	-				-0.5
2,029,241	-				-0.9
2,029,306	+				-0.8
2,029,306	+				-0.5
2,029,307	-				+3.3
2,029,307	-				-1.5
2,029,313	-				-2.2
2,029,372	+		DDA3937_RS09005	0.16	+1.2
2,029,372	+		DDA3937_RS09005	0.16	+0.6
2,029,402	+		DDA3937_RS09005	0.19	-2.4
2,029,422	+		DDA3937_RS09005	0.21	+0.5
2,029,422	+		DDA3937_RS09005	0.21	-1.8
2,029,422	+		DDA3937_RS09005	0.21	-2.0
2,029,423	-		DDA3937_RS09005	0.21	-0.8
2,029,425	+		DDA3937_RS09005	0.22	-0.8
2,029,504	+		DDA3937_RS09005	0.30	-1.6
2,029,504	+		DDA3937_RS09005	0.30	-3.4
2,029,504	+		DDA3937_RS09005	0.30	-1.5
2,029,504	+		DDA3937_RS09005	0.30	-2.0
2,029,504	+		DDA3937_RS09005	0.30	-3.0
2,029,505	-		DDA3937_RS09005	0.30	+1.8
2,029,508	-		DDA3937_RS09005	0.31	+1.3
2,029,589	-		DDA3937_RS09005	0.40	-0.0
2,029,589	-		DDA3937_RS09005	0.40	-1.0
2,029,601	-		DDA3937_RS09005	0.41	+0.2
2,029,601	-		DDA3937_RS09005	0.41	-0.2
2,029,601	-		DDA3937_RS09005	0.41	+0.5
2,029,617	+		DDA3937_RS09005	0.43	-1.1
2,029,617	+		DDA3937_RS09005	0.43	+1.2
2,029,618	-		DDA3937_RS09005	0.43	+0.7
2,029,618	-		DDA3937_RS09005	0.43	-2.5
2,029,618	-		DDA3937_RS09005	0.43	-1.3
2,029,619	+		DDA3937_RS09005	0.43	-0.3
2,029,620	-		DDA3937_RS09005	0.43	-0.6
2,029,682	+		DDA3937_RS09005	0.50	-0.8
2,029,682	+		DDA3937_RS09005	0.50	-2.8
2,029,682	+		DDA3937_RS09005	0.50	+2.1
2,029,682	+		DDA3937_RS09005	0.50	-1.3
2,029,683	-		DDA3937_RS09005	0.50	-0.8
2,029,707	+		DDA3937_RS09005	0.53	-1.3
2,029,707	+		DDA3937_RS09005	0.53	-0.5
2,029,707	+		DDA3937_RS09005	0.53	+0.4
2,029,708	-		DDA3937_RS09005	0.53	-1.1
2,029,708	-		DDA3937_RS09005	0.53	-0.8
2,029,708	-		DDA3937_RS09005	0.53	-2.8
2,029,708	-		DDA3937_RS09005	0.53	-2.1
2,029,731	-		DDA3937_RS09005	0.55	+0.7
2,029,737	+		DDA3937_RS09005	0.56	-0.8
2,029,737	+		DDA3937_RS09005	0.56	-0.5
2,029,738	-		DDA3937_RS09005	0.56	+1.7
2,029,741	+		DDA3937_RS09005	0.57	-0.8
2,029,741	+		DDA3937_RS09005	0.57	-0.5
2,029,741	+				-0.5
2,029,742	-		DDA3937_RS09005	0.57	-1.1
2,029,742	-		DDA3937_RS09005	0.57	-1.1
2,029,742	-		DDA3937_RS09005	0.57	-1.5
2,029,745	+		DDA3937_RS09005	0.57	-1.5
2,029,745	+		DDA3937_RS09005	0.57	+0.5
2,029,746	-				-0.1
2,029,764	-		DDA3937_RS09005	0.59	+0.0
2,029,800	+		DDA3937_RS09005	0.63	+3.0
2,029,801	-		DDA3937_RS09005	0.63	-2.0
2,029,801	-		DDA3937_RS09005	0.63	+1.4
2,029,802	+		DDA3937_RS09005	0.63	+2.2
2,029,802	+		DDA3937_RS09005	0.63	-2.2
2,029,802	+		DDA3937_RS09005	0.63	-1.5
2,029,803	-		DDA3937_RS09005	0.63	-2.3
2,029,823	+				-0.1
2,029,823	+		DDA3937_RS09005	0.66	-1.5
2,029,824	-				+0.5
2,029,853	+		DDA3937_RS09005	0.69	+1.1
2,029,854	-		DDA3937_RS09005	0.69	-0.5
2,029,854	-		DDA3937_RS09005	0.69	+1.7
2,029,973	-		DDA3937_RS09005	0.82	+1.3
2,029,978	+		DDA3937_RS09005	0.83	+1.4
2,029,978	+		DDA3937_RS09005	0.83	-1.3
2,029,978	+		DDA3937_RS09005	0.83	-2.4
2,029,978	+		DDA3937_RS09005	0.83	-1.3
2,029,979	-		DDA3937_RS09005	0.83	-2.2
2,029,981	+		DDA3937_RS09005	0.83	+1.3
2,029,993	-		DDA3937_RS09005	0.84	-0.1
2,030,025	+		DDA3937_RS09005	0.88	+1.2
2,030,151	-				-1.6
2,030,155	-				-0.5
2,030,164	+				-0.8
2,030,164	+				-1.7
2,030,165	-				-2.0
2,030,165	-				-2.8
2,030,169	-				+0.3
2,030,182	-				-0.8
2,030,182	-				-0.2
2,030,297	+				-2.3
2,030,297	+				-2.8
2,030,298	-				-1.4
2,030,298	-				+0.1
2,030,298	-				-1.7
2,030,298	-				-3.0
2,030,298	-				-2.4
2,030,298	-				+1.3
2,030,345	-				+1.2
2,030,348	+				+2.6
2,030,348	+				-0.5
2,030,348	+				-0.5
2,030,349	-				+1.0
2,030,366	+				-1.3
2,030,367	-				-2.0
2,030,367	-				-0.5
2,030,480	+		DDA3937_RS09010	0.33	-0.8
2,030,514	-		DDA3937_RS09010	0.41	-2.0
2,030,543	+				-0.5
2,030,553	+		DDA3937_RS09010	0.50	+0.1
2,030,553	+		DDA3937_RS09010	0.50	-2.3
2,030,554	-		DDA3937_RS09010	0.50	+0.2
2,030,554	-		DDA3937_RS09010	0.50	+0.3
2,030,617	+		DDA3937_RS09010	0.65	-2.0
2,030,618	-		DDA3937_RS09010	0.65	-2.4
2,030,778	+				+0.6
2,030,779	-				+0.5
2,030,792	+				-0.9
2,030,793	-				+1.4
2,030,793	-				+0.1
2,030,909	-				-0.8
2,030,963	+				-1.3
2,031,077	+				+2.0
2,031,124	+				-2.0