Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08930

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,015,388	-		DDA3937_RS08920	0.80	-2.0
2,015,474	+		DDA3937_RS08920	0.87	+1.9
2,015,475	-		DDA3937_RS08920	0.87	-0.5
2,015,630	+				-1.7
2,015,652	-				-0.9
2,015,652	-				+2.7
2,015,652	-				+2.5
2,015,681	+				+1.4
2,015,681	+				-0.5
2,015,682	-				-0.1
2,015,682	-				-0.2
2,015,689	+				-2.9
2,015,689	+				+1.2
2,015,690	-				-2.0
2,015,690	-				-2.3
2,015,690	-				+2.0
2,015,695	-				-1.1
2,015,747	-				+3.4
2,015,805	+				-1.8
2,015,805	+				+3.9
2,015,806	-				+1.1
2,015,838	+				+1.2
2,015,842	+				+0.3
2,015,842	+				-2.4
2,015,842	+				-3.0
2,015,843	-				-1.8
2,015,843	-				-2.2
2,015,843	-				-0.3
2,015,843	-				-3.5
2,015,844	+				+1.5
2,015,844	+				-0.8
2,015,844	+				+1.2
2,015,844	+				+0.4
2,015,844	+				+0.8
2,015,844	+				-0.3
2,015,845	-				-0.5
2,015,845	-				+0.1
2,015,845	-				+1.6
2,015,845	-				-0.5
2,015,845	-				+0.4
2,015,864	+				+2.0
2,015,864	+				-1.4
2,015,905	+				-0.5
2,015,905	+				+0.5
2,015,926	+				+0.5
2,015,926	+				-1.3
2,015,927	-				-2.6
2,015,927	-				+2.5
2,015,927	-				-1.8
2,015,927	-				-2.7
2,015,927	-				-1.5
2,015,927	-				-0.8
2,015,927	-				-0.8
2,015,927	-				-1.3
2,015,945	+				+0.5
2,015,946	-				-2.2
2,015,975	+		DDA3937_RS08925	0.13	+2.3
2,016,007	+		DDA3937_RS08925	0.22	-0.2
2,016,007	+		DDA3937_RS08925	0.22	+1.6
2,016,007	+		DDA3937_RS08925	0.22	-0.7
2,016,008	-		DDA3937_RS08925	0.22	+0.2
2,016,008	-		DDA3937_RS08925	0.22	+0.9
2,016,010	+		DDA3937_RS08925	0.23	-0.5
2,016,010	+		DDA3937_RS08925	0.23	-1.1
2,016,011	-		DDA3937_RS08925	0.23	-2.9
2,016,011	-		DDA3937_RS08925	0.23	+1.7
2,016,011	-		DDA3937_RS08925	0.23	-0.8
2,016,012	+				+0.5
2,016,013	-		DDA3937_RS08925	0.24	+3.1
2,016,013	-		DDA3937_RS08925	0.24	-0.1
2,016,053	+		DDA3937_RS08925	0.36	+0.4
2,016,061	+		DDA3937_RS08925	0.38	-0.3
2,016,061	+		DDA3937_RS08925	0.38	-0.5
2,016,061	+		DDA3937_RS08925	0.38	-0.8
2,016,062	-		DDA3937_RS08925	0.38	-0.5
2,016,062	-		DDA3937_RS08925	0.38	-0.2
2,016,062	-		DDA3937_RS08925	0.38	-1.3
2,016,062	-		DDA3937_RS08925	0.38	-0.5
2,016,062	-		DDA3937_RS08925	0.38	-2.1
2,016,062	-		DDA3937_RS08925	0.38	-3.0
2,016,062	-		DDA3937_RS08925	0.38	+1.3
2,016,062	-		DDA3937_RS08925	0.38	-1.4
2,016,136	+		DDA3937_RS08925	0.60	-0.3
2,016,145	+		DDA3937_RS08925	0.63	-1.2
2,016,146	-		DDA3937_RS08925	0.63	-1.8
2,016,146	-		DDA3937_RS08925	0.63	-0.1
2,016,160	+		DDA3937_RS08925	0.67	-2.1
2,016,163	+		DDA3937_RS08925	0.68	+0.5
2,016,164	-		DDA3937_RS08925	0.68	-1.3
2,016,259	+				+0.7
2,016,259	+				+0.7
2,016,259	+				-1.5
2,016,260	-				+0.1
2,016,260	-				-3.8
2,016,260	-				-1.8
2,016,262	+				-0.2
2,016,262	+				+1.5
2,016,262	+				-2.1
2,016,262	+				+2.9
2,016,262	+				+0.3
2,016,262	+				-2.3
2,016,263	-				-0.2
2,016,263	-				+1.6
2,016,263	-				+1.3
2,016,263	-				+0.4
2,016,263	-				-2.0
2,016,271	+				+1.1
2,016,271	+				-0.1
2,016,276	+				+1.0
2,016,276	+				-3.5
2,016,440	+		DDA3937_RS08930	0.16	-0.8
2,016,440	+		DDA3937_RS08930	0.16	-0.8
2,016,441	-		DDA3937_RS08930	0.16	-0.0
2,016,441	-		DDA3937_RS08930	0.16	-1.7
2,016,441	-		DDA3937_RS08930	0.16	-0.2
2,016,441	-		DDA3937_RS08930	0.16	+3.1
2,016,441	-		DDA3937_RS08930	0.16	+0.6
2,016,444	+		DDA3937_RS08930	0.17	-2.4
2,016,444	+		DDA3937_RS08930	0.17	-1.5
2,016,444	+		DDA3937_RS08930	0.17	-1.1
2,016,444	+		DDA3937_RS08930	0.17	-1.8
2,016,444	+		DDA3937_RS08930	0.17	-2.5
2,016,444	+		DDA3937_RS08930	0.17	-1.1
2,016,445	-		DDA3937_RS08930	0.17	-2.3
2,016,445	-		DDA3937_RS08930	0.17	+1.4
2,016,522	+		DDA3937_RS08930	0.31	-1.7
2,016,523	-		DDA3937_RS08930	0.31	-1.3
2,016,523	-		DDA3937_RS08930	0.31	-0.7
2,016,523	-		DDA3937_RS08930	0.31	-1.7
2,016,541	-		DDA3937_RS08930	0.35	+0.3
2,016,578	+		DDA3937_RS08930	0.42	-2.8
2,016,578	+		DDA3937_RS08930	0.42	+0.4
2,016,714	+		DDA3937_RS08930	0.67	+0.3
2,016,715	-		DDA3937_RS08930	0.67	-1.5
2,016,715	-		DDA3937_RS08930	0.67	-1.1
2,016,715	-		DDA3937_RS08930	0.67	-2.3
2,016,716	+		DDA3937_RS08930	0.68	+2.9
2,016,716	+		DDA3937_RS08930	0.68	+0.2
2,016,716	+				+1.5
2,016,717	-		DDA3937_RS08930	0.68	-1.8
2,016,717	-		DDA3937_RS08930	0.68	-2.5
2,016,717	-		DDA3937_RS08930	0.68	-2.5
2,016,717	-		DDA3937_RS08930	0.68	-2.1
2,016,873	+				+0.5
2,016,873	+				-1.1
2,016,873	+				-0.1
2,016,873	+				-1.8
2,016,874	-				-3.1
2,016,874	-				-1.5
2,016,875	+				+0.9
2,016,875	+				-3.1
2,016,875	+				-1.3
2,016,875	+				+0.6
2,016,876	-				-2.4
2,016,876	-				-2.3
2,016,876	-				+0.9
2,016,876	-				-1.1
2,016,876	-				-1.8
2,016,876	-				-1.1
2,016,906	+				+0.5
2,016,906	+				-1.5
2,016,906	+				-2.4
2,016,906	+				+2.2
2,016,906	+				-1.1
2,016,906	+				-0.5
2,016,907	-				-0.4
2,016,907	-				-0.8
2,016,907	-				+0.6
2,016,914	+				-0.5
2,016,914	+				-1.3
2,016,915	-				-1.3
2,016,915	-				-1.1
2,016,915	-				+0.5
2,016,915	-				+0.5
2,016,920	-				+2.3
2,016,920	-				-0.8
2,016,990	+				-2.2
2,016,990	+				+1.5
2,016,990	+				-1.4
2,016,990	+				-2.1
2,016,990	+				-0.8
2,016,993	+				-0.5
2,016,993	+				+1.0
2,016,993	+				-1.5
2,016,993	+				-2.4
2,016,994	-				-0.1
2,016,994	-				-0.5
2,016,994	-				-0.8
2,016,994	-				-0.7
2,016,994	-				-1.1
2,016,994	-				-2.2
2,016,999	+				-2.8
2,016,999	+				+0.5
2,016,999	+				-0.1
2,017,004	+				-2.4
2,017,004	+				-0.2
2,017,004	+				-2.1
2,017,004	+				-0.5
2,017,004	+				-2.1
2,017,005	-				-0.5
2,017,005	-				-0.4
2,017,005	-				-1.3
2,017,005	-				+0.4
2,017,034	+				-1.3
2,017,034	+				-0.8
2,017,034	+				+0.8
2,017,142	+				+0.1
2,017,206	+				-1.7
2,017,207	-				+2.9
2,017,207	-				-0.1
2,017,207	-				+2.1
2,017,212	-				-0.1
2,017,316	+				+0.3
2,017,316	+				+0.0
2,017,352	-				+1.2
2,017,352	-				+0.6
2,017,361	-				-1.2
2,017,373	-				-0.7
2,017,394	-				+1.5
2,017,422	+				-0.8
2,017,422	+				-1.1
2,017,423	-				-1.1
2,017,423	-				+1.5
2,017,423	-				+0.5
2,017,423	-				-2.8
2,017,423	-				-2.2
2,017,425	+				-1.6
2,017,425	+				+0.8
2,017,425	+				+0.8
2,017,425	+				-2.1
2,017,425	+				+0.0
2,017,425	+				-2.0
2,017,425	+				-2.2
2,017,425	+				-1.3
2,017,425	+				-2.0
2,017,426	-				-0.4
2,017,426	-				-1.1
2,017,426	-				-0.6
2,017,426	-				+0.9
2,017,426	-				+2.1
2,017,426	-				+1.5
2,017,429	+				+1.4
2,017,429	+				-1.0
2,017,429	+				+0.6
2,017,429	+				+1.5
2,017,430	-				-1.8
2,017,430	-				+0.8
2,017,582	-				+0.2
2,017,582	-				+2.5
2,017,623	+		DDA3937_RS08935	0.12	-1.7
2,017,624	-		DDA3937_RS08935	0.12	+1.2
2,017,635	+		DDA3937_RS08935	0.13	-0.8
2,017,635	+				-0.8
2,017,641	+		DDA3937_RS08935	0.13	-2.1
2,017,641	+		DDA3937_RS08935	0.13	+0.5
2,017,642	-		DDA3937_RS08935	0.14	+0.5
2,017,642	-		DDA3937_RS08935	0.14	+0.9
2,017,652	+		DDA3937_RS08935	0.14	-1.3
2,017,652	+		DDA3937_RS08935	0.14	+3.0
2,017,653	-		DDA3937_RS08935	0.14	+1.1
2,017,653	-		DDA3937_RS08935	0.14	+1.5
2,017,787	+		DDA3937_RS08935	0.23	-1.1
2,017,787	+		DDA3937_RS08935	0.23	-3.5
2,017,811	+		DDA3937_RS08935	0.24	-0.8
2,017,811	+		DDA3937_RS08935	0.24	+1.9
2,017,811	+		DDA3937_RS08935	0.24	-0.1
2,017,811	+		DDA3937_RS08935	0.24	-1.1
2,017,812	-				+1.5
2,017,836	+		DDA3937_RS08935	0.26	+0.2
2,017,836	+		DDA3937_RS08935	0.26	-1.2
2,017,837	-		DDA3937_RS08935	0.26	-0.4
2,017,837	-		DDA3937_RS08935	0.26	-0.1