Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08790

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,985,960	+		DDA3937_RS08785	0.46	-2.0
1,985,961	-		DDA3937_RS08785	0.46	-0.3
1,985,961	-		DDA3937_RS08785	0.46	+0.8
1,985,961	-		DDA3937_RS08785	0.46	-1.3
1,986,078	-		DDA3937_RS08785	0.55	-1.1
1,986,090	+		DDA3937_RS08785	0.56	+3.1
1,986,090	+		DDA3937_RS08785	0.56	+1.3
1,986,090	+		DDA3937_RS08785	0.56	-1.3
1,986,091	-		DDA3937_RS08785	0.56	-1.3
1,986,162	+		DDA3937_RS08785	0.62	+0.5
1,986,162	+		DDA3937_RS08785	0.62	-2.3
1,986,375	+		DDA3937_RS08785	0.78	-2.2
1,986,375	+		DDA3937_RS08785	0.78	+0.9
1,986,375	+		DDA3937_RS08785	0.78	+2.2
1,986,375	+		DDA3937_RS08785	0.78	+2.0
1,986,375	+		DDA3937_RS08785	0.78	+1.5
1,986,376	-		DDA3937_RS08785	0.78	+1.1
1,986,409	-				+0.5
1,986,409	-		DDA3937_RS08785	0.81	-0.5
1,986,420	+		DDA3937_RS08785	0.82	-2.1
1,986,420	+		DDA3937_RS08785	0.82	-2.7
1,986,420	+		DDA3937_RS08785	0.82	+1.0
1,986,420	+		DDA3937_RS08785	0.82	+1.6
1,986,421	-		DDA3937_RS08785	0.82	-0.1
1,986,421	-		DDA3937_RS08785	0.82	+0.5
1,986,421	-		DDA3937_RS08785	0.82	-0.5
1,986,421	-		DDA3937_RS08785	0.82	+1.1
1,986,421	-		DDA3937_RS08785	0.82	-1.6
1,986,421	-		DDA3937_RS08785	0.82	+0.6
1,986,421	-		DDA3937_RS08785	0.82	-0.3
1,986,421	-		DDA3937_RS08785	0.82	-0.1
1,986,421	-		DDA3937_RS08785	0.82	-2.2
1,986,421	-		DDA3937_RS08785	0.82	-3.6
1,986,421	-		DDA3937_RS08785	0.82	+0.5
1,986,463	+		DDA3937_RS08785	0.85	-1.8
1,986,464	-		DDA3937_RS08785	0.85	-3.2
1,986,464	-		DDA3937_RS08785	0.85	+1.0
1,986,539	-				-0.8
1,986,539	-				-2.7
1,986,539	-				-1.3
1,986,651	+				-1.8
1,986,651	+				+0.8
1,986,651	+				-0.3
1,986,652	-				+1.2
1,986,666	+				-0.7
1,986,667	-				-2.3
1,986,667	-				+0.3
1,986,667	-				-0.8
1,986,675	+				-2.2
1,986,675	+				+2.9
1,986,675	+				-2.1
1,986,675	+				+0.2
1,986,675	+				+1.4
1,986,675	+				-2.5
1,986,675	+				-0.5
1,986,675	+				+1.9
1,986,676	-				-1.8
1,986,676	-				+1.2
1,986,676	-				-0.5
1,986,676	-				-1.1
1,986,676	-				+0.6
1,986,676	-				-1.6
1,986,676	-				+1.1
1,986,676	-				+0.4
1,986,676	-				-1.6
1,986,676	-				+1.8
1,986,676	-				-0.1
1,986,745	+				-0.7
1,986,746	-				+0.7
1,986,746	-				+1.3
1,986,746	-				-1.8
1,986,806	-				+2.3
1,986,867	+				+1.3
1,986,868	-				+0.2
1,986,879	+				-2.3
1,986,879	+				+1.6
1,986,880	-				-1.6
1,986,880	-				-2.1
1,986,989	-				-0.5
1,987,078	+				-1.4
1,987,078	+				+2.1
1,987,084	+		DDA3937_RS08790	0.10	+1.7
1,987,085	-		DDA3937_RS08790	0.10	+0.9
1,987,121	+		DDA3937_RS08790	0.13	-2.6
1,987,122	-		DDA3937_RS08790	0.13	+1.7
1,987,122	-		DDA3937_RS08790	0.13	-0.5
1,987,187	+		DDA3937_RS08790	0.18	+2.3
1,987,235	+		DDA3937_RS08790	0.22	-0.4
1,987,235	+		DDA3937_RS08790	0.22	-1.6
1,987,243	+		DDA3937_RS08790	0.23	+1.5
1,987,325	-		DDA3937_RS08790	0.29	+1.1
1,987,342	+		DDA3937_RS08790	0.30	-1.8
1,987,342	+		DDA3937_RS08790	0.30	+2.4
1,987,342	+		DDA3937_RS08790	0.30	+0.2
1,987,342	+		DDA3937_RS08790	0.30	+2.7
1,987,342	+		DDA3937_RS08790	0.30	-1.5
1,987,343	-		DDA3937_RS08790	0.31	-1.8
1,987,343	-		DDA3937_RS08790	0.31	+1.7
1,987,343	-		DDA3937_RS08790	0.31	-2.4
1,987,407	-		DDA3937_RS08790	0.36	-0.3
1,987,482	+		DDA3937_RS08790	0.41	-2.1
1,987,482	+		DDA3937_RS08790	0.41	-1.1
1,987,482	+		DDA3937_RS08790	0.41	-1.6
1,987,482	+		DDA3937_RS08790	0.41	-1.1
1,987,483	-		DDA3937_RS08790	0.41	-1.8
1,987,483	-		DDA3937_RS08790	0.41	+1.9
1,987,483	-		DDA3937_RS08790	0.41	-0.5
1,987,483	-		DDA3937_RS08790	0.41	-1.3
1,987,483	-		DDA3937_RS08790	0.41	-2.6
1,987,522	+		DDA3937_RS08790	0.45	-2.1
1,987,523	-		DDA3937_RS08790	0.45	-2.2
1,987,523	-		DDA3937_RS08790	0.45	-3.6
1,987,583	-		DDA3937_RS08790	0.49	-1.6
1,987,583	-		DDA3937_RS08790	0.49	-2.5
1,987,628	+		DDA3937_RS08790	0.53	-3.5
1,987,628	+		DDA3937_RS08790	0.53	-1.6
1,987,628	+		DDA3937_RS08790	0.53	-2.5
1,987,628	+		DDA3937_RS08790	0.53	+0.9
1,987,628	+		DDA3937_RS08790	0.53	-0.9
1,987,628	+		DDA3937_RS08790	0.53	-2.3
1,987,628	+		DDA3937_RS08790	0.53	+0.9
1,987,628	+		DDA3937_RS08790	0.53	+0.8
1,987,628	+		DDA3937_RS08790	0.53	+0.9
1,987,628	+		DDA3937_RS08790	0.53	+0.5
1,987,629	-		DDA3937_RS08790	0.53	-2.3
1,987,629	-		DDA3937_RS08790	0.53	+1.2
1,987,629	-		DDA3937_RS08790	0.53	-1.8
1,987,629	-		DDA3937_RS08790	0.53	+1.6
1,987,629	-		DDA3937_RS08790	0.53	+0.5
1,987,629	-		DDA3937_RS08790	0.53	-1.8
1,987,629	-		DDA3937_RS08790	0.53	-2.1
1,987,630	+		DDA3937_RS08790	0.53	-2.8
1,987,630	+		DDA3937_RS08790	0.53	-0.2
1,987,630	+		DDA3937_RS08790	0.53	+0.6
1,987,631	-		DDA3937_RS08790	0.53	-0.8
1,987,631	-		DDA3937_RS08790	0.53	+1.1
1,987,631	-		DDA3937_RS08790	0.53	-2.2
1,987,677	-		DDA3937_RS08790	0.57	-1.8
1,987,678	+		DDA3937_RS08790	0.57	-3.9
1,987,678	+		DDA3937_RS08790	0.57	-0.8
1,987,776	+		DDA3937_RS08790	0.64	-0.5
1,987,776	+		DDA3937_RS08790	0.64	-2.4
1,987,948	+		DDA3937_RS08790	0.78	-0.8
1,987,948	+		DDA3937_RS08790	0.78	+0.8
1,987,961	+		DDA3937_RS08790	0.79	-0.1
1,987,962	-		DDA3937_RS08790	0.79	-1.5
1,987,988	+		DDA3937_RS08790	0.81	+3.8
1,987,994	+		DDA3937_RS08790	0.81	+0.2
1,987,995	-		DDA3937_RS08790	0.82	-0.8
1,988,006	+		DDA3937_RS08790	0.82	+2.2
1,988,006	+		DDA3937_RS08790	0.82	-0.1
1,988,007	-		DDA3937_RS08790	0.82	+2.7
1,988,007	-		DDA3937_RS08790	0.82	-1.5
1,988,007	-		DDA3937_RS08790	0.82	+1.9
1,988,007	-		DDA3937_RS08790	0.82	-0.5
1,988,007	-		DDA3937_RS08790	0.82	-0.6
1,988,007	-		DDA3937_RS08790	0.82	-2.1
1,988,007	-		DDA3937_RS08790	0.82	-0.1
1,988,026	-		DDA3937_RS08790	0.84	+1.8
1,988,028	+		DDA3937_RS08790	0.84	-0.2
1,988,028	+		DDA3937_RS08790	0.84	+0.2
1,988,029	-		DDA3937_RS08790	0.84	+0.9
1,988,124	+				-0.6
1,988,228	+				+1.5
1,988,228	+				-1.1
1,988,229	-				+1.5
1,988,229	-				+1.1
1,988,229	-				-2.5
1,988,249	+				+1.3
1,988,250	-				+1.5
1,988,250	-				-0.1
1,988,250	-				-2.3
1,988,250	-				+0.1
1,988,282	+				-0.5
1,988,283	-				+0.3
1,988,283	-				+1.8
1,988,310	+				-4.1
1,988,378	+				-2.3
1,988,378	+				+1.5
1,988,378	+				-3.1
1,988,378	+				+2.7
1,988,379	-				+2.0
1,988,379	-				+2.1
1,988,379	-				-2.2
1,988,379	-				+1.0
1,988,379	-				-1.8
1,988,379	-				-0.2
1,988,457	+				+0.2
1,988,457	+				+1.4
1,988,458	-				-2.2
1,988,458	-				+0.1
1,988,458	-				+0.6
1,988,594	+		DDA3937_RS08795	0.17	-1.5
1,988,607	+		DDA3937_RS08795	0.18	-1.0
1,988,608	-		DDA3937_RS08795	0.18	-2.1
1,988,609	+		DDA3937_RS08795	0.18	-1.7
1,988,609	+		DDA3937_RS08795	0.18	-2.3
1,988,609	+		DDA3937_RS08795	0.18	-1.1
1,988,609	+		DDA3937_RS08795	0.18	-1.7
1,988,610	-		DDA3937_RS08795	0.18	-1.2
1,988,610	-		DDA3937_RS08795	0.18	-2.0
1,988,610	-		DDA3937_RS08795	0.18	-0.5
1,988,639	-		DDA3937_RS08795	0.20	-0.3
1,988,639	-		DDA3937_RS08795	0.20	-0.1
1,988,670	+		DDA3937_RS08795	0.22	+2.4
1,988,670	+		DDA3937_RS08795	0.22	+0.5
1,988,672	+		DDA3937_RS08795	0.22	+1.2
1,988,673	-		DDA3937_RS08795	0.22	-1.3
1,988,726	+		DDA3937_RS08795	0.25	-0.1
1,988,760	+		DDA3937_RS08795	0.27	+1.0
1,988,926	-		DDA3937_RS08795	0.37	-2.2
1,988,927	+		DDA3937_RS08795	0.37	+2.1
1,988,927	+		DDA3937_RS08795	0.37	+3.0
1,989,021	-		DDA3937_RS08795	0.42	-1.9
1,989,038	+		DDA3937_RS08795	0.43	+0.0
1,989,038	+		DDA3937_RS08795	0.43	-0.5
1,989,039	-		DDA3937_RS08795	0.43	+0.3
1,989,059	+		DDA3937_RS08795	0.45	+0.4
1,989,059	+		DDA3937_RS08795	0.45	-0.9
1,989,060	-		DDA3937_RS08795	0.45	+0.3
1,989,060	-				-0.8
1,989,092	+		DDA3937_RS08795	0.47	-2.2
1,989,201	+		DDA3937_RS08795	0.53	+2.3
1,989,216	-		DDA3937_RS08795	0.54	-2.4