Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08255

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,865,831	+		DDA3937_RS08245	0.74	+0.8
1,865,865	+		DDA3937_RS08245	0.78	-1.7
1,865,866	-		DDA3937_RS08245	0.78	-2.4
1,865,866	-		DDA3937_RS08245	0.78	-2.4
1,865,898	+		DDA3937_RS08245	0.83	-1.1
1,865,955	+				+1.7
1,865,958	-				-1.2
1,865,958	-				-3.2
1,865,958	-				-0.9
1,865,958	-				+2.0
1,866,035	+				+1.1
1,866,035	+				+0.8
1,866,049	+				-1.6
1,866,067	+				-0.9
1,866,068	-				-2.7
1,866,068	-				+1.4
1,866,072	+				-0.9
1,866,072	+				-1.6
1,866,072	+				-1.9
1,866,072	+				-0.7
1,866,072	+				+0.8
1,866,073	-				+2.4
1,866,073	-				-0.1
1,866,075	+				+0.6
1,866,075	+				-1.4
1,866,160	+		DDA3937_RS08250	0.16	-1.3
1,866,227	+		DDA3937_RS08250	0.25	-3.1
1,866,227	+		DDA3937_RS08250	0.25	-1.5
1,866,227	+		DDA3937_RS08250	0.25	-2.9
1,866,227	+		DDA3937_RS08250	0.25	-1.4
1,866,227	+		DDA3937_RS08250	0.25	+3.0
1,866,227	+		DDA3937_RS08250	0.25	-0.1
1,866,227	+		DDA3937_RS08250	0.25	-2.6
1,866,227	+		DDA3937_RS08250	0.25	-0.6
1,866,227	+		DDA3937_RS08250	0.25	-1.9
1,866,227	+				-0.6
1,866,227	+		DDA3937_RS08250	0.25	-1.6
1,866,228	-		DDA3937_RS08250	0.26	-2.9
1,866,228	-		DDA3937_RS08250	0.26	-0.7
1,866,228	-		DDA3937_RS08250	0.26	-0.5
1,866,228	-		DDA3937_RS08250	0.26	-0.9
1,866,228	-		DDA3937_RS08250	0.26	+3.1
1,866,228	-		DDA3937_RS08250	0.26	-0.9
1,866,228	-		DDA3937_RS08250	0.26	+0.4
1,866,228	-		DDA3937_RS08250	0.26	-2.5
1,866,228	-		DDA3937_RS08250	0.26	+2.2
1,866,228	-		DDA3937_RS08250	0.26	+0.0
1,866,236	+		DDA3937_RS08250	0.27	+2.4
1,866,236	+		DDA3937_RS08250	0.27	+0.8
1,866,236	+		DDA3937_RS08250	0.27	-2.6
1,866,237	-		DDA3937_RS08250	0.27	+0.1
1,866,237	-		DDA3937_RS08250	0.27	-1.4
1,866,237	-		DDA3937_RS08250	0.27	+2.3
1,866,267	+		DDA3937_RS08250	0.31	-1.6
1,866,267	+		DDA3937_RS08250	0.31	-0.6
1,866,267	+		DDA3937_RS08250	0.31	+0.7
1,866,268	-		DDA3937_RS08250	0.31	-2.3
1,866,268	-		DDA3937_RS08250	0.31	-2.3
1,866,268	-		DDA3937_RS08250	0.31	-0.4
1,866,278	+		DDA3937_RS08250	0.33	+0.4
1,866,278	+		DDA3937_RS08250	0.33	-1.7
1,866,278	+		DDA3937_RS08250	0.33	-1.1
1,866,278	+		DDA3937_RS08250	0.33	+0.2
1,866,279	-		DDA3937_RS08250	0.33	-3.3
1,866,279	-		DDA3937_RS08250	0.33	+0.4
1,866,279	-		DDA3937_RS08250	0.33	+1.8
1,866,372	+		DDA3937_RS08250	0.46	+1.9
1,866,373	-		DDA3937_RS08250	0.46	-1.3
1,866,386	+		DDA3937_RS08250	0.48	+3.4
1,866,467	+		DDA3937_RS08250	0.60	+1.4
1,866,467	+		DDA3937_RS08250	0.60	-3.4
1,866,467	+		DDA3937_RS08250	0.60	+0.0
1,866,467	+		DDA3937_RS08250	0.60	-1.1
1,866,468	-		DDA3937_RS08250	0.60	+0.7
1,866,468	-		DDA3937_RS08250	0.60	+1.0
1,866,468	-		DDA3937_RS08250	0.60	+1.2
1,866,469	+		DDA3937_RS08250	0.60	-1.1
1,866,469	+		DDA3937_RS08250	0.60	+0.8
1,866,469	+		DDA3937_RS08250	0.60	-0.1
1,866,469	+		DDA3937_RS08250	0.60	-0.1
1,866,469	+		DDA3937_RS08250	0.60	-1.0
1,866,469	+		DDA3937_RS08250	0.60	+1.1
1,866,470	-		DDA3937_RS08250	0.60	+0.2
1,866,470	-		DDA3937_RS08250	0.60	+0.1
1,866,470	-		DDA3937_RS08250	0.60	-0.7
1,866,470	-		DDA3937_RS08250	0.60	+0.1
1,866,470	-		DDA3937_RS08250	0.60	-1.1
1,866,512	-		DDA3937_RS08250	0.66	+2.8
1,866,599	+		DDA3937_RS08250	0.79	+3.5
1,866,599	+		DDA3937_RS08250	0.79	-2.1
1,866,599	+		DDA3937_RS08250	0.79	-1.6
1,866,599	+		DDA3937_RS08250	0.79	+0.9
1,866,600	-		DDA3937_RS08250	0.79	-2.6
1,866,600	-		DDA3937_RS08250	0.79	-2.3
1,866,600	-		DDA3937_RS08250	0.79	-1.1
1,866,600	-		DDA3937_RS08250	0.79	-1.6
1,866,600	-		DDA3937_RS08250	0.79	+2.5
1,866,647	+		DDA3937_RS08250	0.86	-2.0
1,866,647	+		DDA3937_RS08250	0.86	+0.7
1,866,647	+		DDA3937_RS08250	0.86	-1.8
1,866,647	+				-0.1
1,866,648	-		DDA3937_RS08250	0.86	-1.6
1,866,648	-		DDA3937_RS08250	0.86	-1.1
1,866,648	-		DDA3937_RS08250	0.86	+0.3
1,866,648	-		DDA3937_RS08250	0.86	-1.6
1,866,648	-		DDA3937_RS08250	0.86	-1.4
1,866,648	-		DDA3937_RS08250	0.86	-1.7
1,866,668	+		DDA3937_RS08250	0.89	-1.1
1,866,734	+				-2.1
1,866,734	+				-1.6
1,866,734	+				-1.6
1,866,734	+				-1.8
1,866,734	+				-0.6
1,866,735	-				-1.7
1,866,735	-				-3.4
1,866,735	-				-2.3
1,866,735	-				-1.4
1,866,743	+				-2.3
1,866,743	+				-0.6
1,866,751	-				-0.1
1,866,751	-				-2.1
1,866,764	+				-0.0
1,866,768	+				+1.1
1,866,768	+				+0.5
1,866,768	+				-2.9
1,866,769	-				+1.1
1,866,848	+		DDA3937_RS08255	0.13	-0.9
1,866,849	-		DDA3937_RS08255	0.13	-1.5
1,866,930	-		DDA3937_RS08255	0.23	+0.6
1,866,969	+		DDA3937_RS08255	0.28	-3.1
1,867,000	+		DDA3937_RS08255	0.32	-2.7
1,867,001	-		DDA3937_RS08255	0.32	+2.9
1,867,001	-		DDA3937_RS08255	0.32	-1.9
1,867,001	-		DDA3937_RS08255	0.32	-1.9
1,867,001	-		DDA3937_RS08255	0.32	+1.0
1,867,032	+		DDA3937_RS08255	0.36	-1.4
1,867,033	-		DDA3937_RS08255	0.37	-2.8
1,867,033	-		DDA3937_RS08255	0.37	+0.7
1,867,033	-		DDA3937_RS08255	0.37	-1.1
1,867,068	+		DDA3937_RS08255	0.41	+1.0
1,867,068	+		DDA3937_RS08255	0.41	+0.1
1,867,072	+		DDA3937_RS08255	0.42	-0.4
1,867,072	+		DDA3937_RS08255	0.42	+0.1
1,867,073	-		DDA3937_RS08255	0.42	+0.5
1,867,073	-		DDA3937_RS08255	0.42	-2.1
1,867,073	-		DDA3937_RS08255	0.42	-0.3
1,867,073	-		DDA3937_RS08255	0.42	-1.0
1,867,073	-		DDA3937_RS08255	0.42	-1.9
1,867,073	-		DDA3937_RS08255	0.42	-2.2
1,867,084	+		DDA3937_RS08255	0.43	-2.2
1,867,085	-		DDA3937_RS08255	0.43	-2.2
1,867,085	-		DDA3937_RS08255	0.43	-2.1
1,867,085	-		DDA3937_RS08255	0.43	-4.0
1,867,135	+		DDA3937_RS08255	0.50	+1.2
1,867,135	+		DDA3937_RS08255	0.50	+1.6
1,867,136	-		DDA3937_RS08255	0.50	+0.3
1,867,166	-		DDA3937_RS08255	0.54	-1.1
1,867,260	+		DDA3937_RS08255	0.66	-0.8
1,867,260	+		DDA3937_RS08255	0.66	-2.5
1,867,270	+		DDA3937_RS08255	0.67	-1.5
1,867,270	+		DDA3937_RS08255	0.67	+3.5
1,867,270	+		DDA3937_RS08255	0.67	-2.5
1,867,271	-		DDA3937_RS08255	0.67	-1.9
1,867,271	-		DDA3937_RS08255	0.67	+1.1
1,867,297	+		DDA3937_RS08255	0.71	-1.6
1,867,297	+		DDA3937_RS08255	0.71	+1.3
1,867,297	+		DDA3937_RS08255	0.71	-2.0
1,867,298	-		DDA3937_RS08255	0.71	-1.0
1,867,298	-				+0.1
1,867,298	-		DDA3937_RS08255	0.71	-0.7
1,867,370	-		DDA3937_RS08255	0.80	-1.7
1,867,370	-		DDA3937_RS08255	0.80	-2.8
1,867,372	+		DDA3937_RS08255	0.81	+2.2
1,867,372	+		DDA3937_RS08255	0.81	+0.6
1,867,372	+		DDA3937_RS08255	0.81	+0.6
1,867,372	+		DDA3937_RS08255	0.81	-0.5
1,867,372	+		DDA3937_RS08255	0.81	-1.3
1,867,372	+		DDA3937_RS08255	0.81	-2.9
1,867,372	+		DDA3937_RS08255	0.81	-1.0
1,867,372	+		DDA3937_RS08255	0.81	+1.6
1,867,372	+		DDA3937_RS08255	0.81	-0.7
1,867,372	+		DDA3937_RS08255	0.81	-0.2
1,867,373	-		DDA3937_RS08255	0.81	-0.5
1,867,373	-		DDA3937_RS08255	0.81	+3.5
1,867,373	-		DDA3937_RS08255	0.81	-2.2
1,867,373	-		DDA3937_RS08255	0.81	+0.4
1,867,373	-		DDA3937_RS08255	0.81	-0.1
1,867,373	-		DDA3937_RS08255	0.81	-2.0
1,867,373	-		DDA3937_RS08255	0.81	-2.5
1,867,386	+		DDA3937_RS08255	0.82	-0.9
1,867,387	-		DDA3937_RS08255	0.82	-3.6
1,867,408	-		DDA3937_RS08255	0.85	-1.2
1,867,408	-		DDA3937_RS08255	0.85	+1.3
1,867,420	+		DDA3937_RS08255	0.87	-3.2
1,867,420	+		DDA3937_RS08255	0.87	+0.2
1,867,420	+		DDA3937_RS08255	0.87	-2.9
1,867,420	+		DDA3937_RS08255	0.87	+0.4
1,867,420	+		DDA3937_RS08255	0.87	-0.4
1,867,421	-		DDA3937_RS08255	0.87	-2.4
1,867,422	+		DDA3937_RS08255	0.87	+3.0
1,867,422	+				+0.5
1,867,487	+				+2.3
1,867,488	-				-1.2
1,867,538	+				+1.5
1,867,538	+				+2.4
1,867,566	+				+0.1
1,867,566	+				+0.3
1,867,566	+				+0.9
1,867,682	+		DDA3937_RS08260	0.21	-2.8
1,867,682	+		DDA3937_RS08260	0.21	+3.8
1,867,718	+		DDA3937_RS08260	0.26	-0.9
1,867,734	-		DDA3937_RS08260	0.29	-1.6
1,867,750	+		DDA3937_RS08260	0.31	-2.6
1,867,751	-		DDA3937_RS08260	0.31	+0.7
1,867,801	+				-0.1
1,867,801	+		DDA3937_RS08260	0.38	+1.2
1,867,801	+		DDA3937_RS08260	0.38	-1.4
1,867,864	+		DDA3937_RS08260	0.46	+1.9
1,867,865	-		DDA3937_RS08260	0.47	-2.7
1,867,865	-		DDA3937_RS08260	0.47	-3.0
1,867,869	-		DDA3937_RS08260	0.47	-1.4
1,867,869	-		DDA3937_RS08260	0.47	+2.0
1,867,923	+				+0.4
1,868,054	-		DDA3937_RS08260	0.73	-1.4
1,868,102	+		DDA3937_RS08260	0.79	+0.4
1,868,150	+		DDA3937_RS08260	0.86	-2.1
1,868,243	-				+0.4
1,868,243	-				-1.9
1,868,243	-				+0.3
1,868,243	-				-2.3
1,868,300	+				+0.9
1,868,300	+				+2.6
1,868,301	-				-1.1
1,868,301	-				-3.4
1,868,333	+				-2.3
1,868,333	+				+1.9
1,868,334	-				-1.3
1,868,334	-				-0.1
1,868,354	-				+1.1
1,868,354	-				+2.3
1,868,354	-				-1.4
1,868,385	-				+1.3
1,868,421	+				+0.9
1,868,422	-				-3.3
1,868,422	-				-0.1
1,868,461	-				-0.4
1,868,520	+				-4.3