Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS07315 and DDA3937_RS07320 are separated by 73 nucleotides DDA3937_RS07320 and DDA3937_RS07325 are separated by 300 nucleotides DDA3937_RS07325 and DDA3937_RS07330 are separated by 141 nucleotides
DDA3937_RS07315: DDA3937_RS07315 - DHA2 family efflux MFS transporter permease subunit, at 1,649,493 to 1,651,019
_RS07315
DDA3937_RS07320: DDA3937_RS07320 - helix-turn-helix domain-containing protein, at 1,651,093 to 1,651,992
_RS07320
DDA3937_RS07325: DDA3937_RS07325 - DUF2501 domain-containing protein, at 1,652,293 to 1,652,778
_RS07325
DDA3937_RS07330: DDA3937_RS07330 - flavin reductase family protein, at 1,652,920 to 1,653,510
_RS07330
Position (kb) 1651
1652 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1650.099 kb on + strand, within DDA3937_RS07315 at 1650.099 kb on + strand, within DDA3937_RS07315 at 1650.099 kb on + strand, within DDA3937_RS07315 at 1650.099 kb on + strand, within DDA3937_RS07315 at 1650.099 kb on + strand, within DDA3937_RS07315 at 1650.099 kb on + strand, within DDA3937_RS07315 at 1650.099 kb on + strand, within DDA3937_RS07315 at 1650.099 kb on + strand, within DDA3937_RS07315 at 1650.099 kb on + strand, within DDA3937_RS07315 at 1650.305 kb on + strand, within DDA3937_RS07315 at 1650.311 kb on + strand, within DDA3937_RS07315 at 1650.393 kb on + strand, within DDA3937_RS07315 at 1650.394 kb on - strand, within DDA3937_RS07315 at 1650.641 kb on + strand, within DDA3937_RS07315 at 1650.642 kb on - strand, within DDA3937_RS07315 at 1650.768 kb on + strand, within DDA3937_RS07315 at 1650.768 kb on + strand, within DDA3937_RS07315 at 1650.768 kb on + strand, within DDA3937_RS07315 at 1650.768 kb on + strand, within DDA3937_RS07315 at 1650.768 kb on + strand, within DDA3937_RS07315 at 1650.768 kb on + strand, within DDA3937_RS07315 at 1650.769 kb on - strand, within DDA3937_RS07315 at 1650.769 kb on - strand, within DDA3937_RS07315 at 1650.769 kb on - strand, within DDA3937_RS07315 at 1650.805 kb on - strand, within DDA3937_RS07315 at 1650.924 kb on + strand at 1650.925 kb on - strand at 1650.925 kb on - strand at 1650.962 kb on + strand at 1650.962 kb on + strand at 1650.963 kb on - strand at 1650.963 kb on - strand at 1651.024 kb on + strand at 1651.024 kb on + strand at 1651.024 kb on + strand at 1651.024 kb on + strand at 1651.025 kb on - strand at 1651.077 kb on + strand at 1651.078 kb on - strand at 1651.100 kb on + strand at 1651.101 kb on - strand at 1651.116 kb on + strand at 1651.116 kb on + strand at 1651.116 kb on + strand at 1651.116 kb on + strand at 1651.116 kb on + strand at 1651.116 kb on + strand at 1651.116 kb on + strand at 1651.117 kb on - strand at 1651.117 kb on - strand at 1651.117 kb on - strand at 1651.117 kb on - strand at 1651.209 kb on + strand, within DDA3937_RS07320 at 1651.230 kb on + strand, within DDA3937_RS07320 at 1651.231 kb on - strand, within DDA3937_RS07320 at 1651.267 kb on + strand, within DDA3937_RS07320 at 1651.267 kb on + strand, within DDA3937_RS07320 at 1651.267 kb on + strand, within DDA3937_RS07320 at 1651.267 kb on + strand, within DDA3937_RS07320 at 1651.270 kb on - strand, within DDA3937_RS07320 at 1651.270 kb on - strand, within DDA3937_RS07320 at 1651.343 kb on + strand, within DDA3937_RS07320 at 1651.343 kb on + strand, within DDA3937_RS07320 at 1651.344 kb on - strand, within DDA3937_RS07320 at 1651.349 kb on - strand, within DDA3937_RS07320 at 1651.386 kb on + strand, within DDA3937_RS07320 at 1651.387 kb on - strand, within DDA3937_RS07320 at 1651.508 kb on + strand, within DDA3937_RS07320 at 1651.545 kb on + strand, within DDA3937_RS07320 at 1651.596 kb on - strand, within DDA3937_RS07320 at 1651.596 kb on - strand, within DDA3937_RS07320 at 1651.649 kb on - strand, within DDA3937_RS07320 at 1651.649 kb on - strand, within DDA3937_RS07320 at 1651.708 kb on + strand, within DDA3937_RS07320 at 1651.716 kb on + strand, within DDA3937_RS07320 at 1651.717 kb on - strand, within DDA3937_RS07320 at 1651.780 kb on - strand, within DDA3937_RS07320 at 1651.789 kb on + strand, within DDA3937_RS07320 at 1651.790 kb on - strand, within DDA3937_RS07320 at 1651.800 kb on + strand, within DDA3937_RS07320 at 1651.801 kb on - strand, within DDA3937_RS07320 at 1651.815 kb on + strand, within DDA3937_RS07320 at 1651.816 kb on - strand, within DDA3937_RS07320 at 1651.816 kb on - strand, within DDA3937_RS07320 at 1651.826 kb on - strand, within DDA3937_RS07320 at 1651.827 kb on + strand, within DDA3937_RS07320 at 1651.827 kb on + strand, within DDA3937_RS07320 at 1651.828 kb on - strand at 1651.857 kb on + strand, within DDA3937_RS07320 at 1651.876 kb on + strand, within DDA3937_RS07320 at 1651.876 kb on + strand, within DDA3937_RS07320 at 1651.876 kb on + strand, within DDA3937_RS07320 at 1651.876 kb on + strand at 1651.877 kb on - strand, within DDA3937_RS07320 at 1651.877 kb on - strand, within DDA3937_RS07320 at 1651.877 kb on - strand, within DDA3937_RS07320 at 1651.879 kb on - strand, within DDA3937_RS07320 at 1651.966 kb on + strand at 1651.967 kb on - strand at 1651.969 kb on + strand at 1651.969 kb on + strand at 1651.969 kb on + strand at 1651.969 kb on + strand at 1651.969 kb on + strand at 1651.969 kb on + strand at 1651.969 kb on + strand at 1651.970 kb on - strand at 1651.970 kb on - strand at 1651.970 kb on - strand at 1651.970 kb on - strand at 1651.971 kb on + strand at 1651.972 kb on - strand at 1651.972 kb on - strand at 1651.972 kb on - strand at 1651.991 kb on - strand at 1651.998 kb on + strand at 1651.998 kb on + strand at 1651.999 kb on - strand at 1652.001 kb on - strand at 1652.001 kb on - strand at 1652.005 kb on + strand at 1652.006 kb on - strand at 1652.010 kb on - strand at 1652.015 kb on - strand at 1652.085 kb on - strand at 1652.085 kb on - strand at 1652.185 kb on + strand at 1652.185 kb on + strand at 1652.185 kb on + strand at 1652.185 kb on + strand at 1652.185 kb on + strand at 1652.186 kb on - strand at 1652.188 kb on + strand at 1652.189 kb on - strand at 1652.189 kb on - strand at 1652.189 kb on - strand at 1652.194 kb on + strand at 1652.250 kb on + strand at 1652.250 kb on + strand at 1652.250 kb on + strand at 1652.251 kb on - strand at 1652.251 kb on - strand at 1652.251 kb on - strand at 1652.251 kb on - strand at 1652.251 kb on - strand at 1652.251 kb on - strand at 1652.252 kb on + strand at 1652.252 kb on + strand at 1652.253 kb on - strand at 1652.253 kb on - strand at 1652.253 kb on - strand at 1652.253 kb on - strand at 1652.284 kb on - strand at 1652.300 kb on + strand at 1652.301 kb on - strand at 1652.301 kb on - strand at 1652.312 kb on + strand at 1652.313 kb on - strand at 1652.313 kb on - strand at 1652.319 kb on + strand at 1652.320 kb on - strand at 1652.320 kb on - strand at 1652.511 kb on + strand, within DDA3937_RS07325 at 1652.522 kb on - strand, within DDA3937_RS07325 at 1652.526 kb on + strand, within DDA3937_RS07325 at 1652.526 kb on + strand, within DDA3937_RS07325 at 1652.566 kb on - strand, within DDA3937_RS07325 at 1652.587 kb on - strand, within DDA3937_RS07325 at 1652.632 kb on + strand, within DDA3937_RS07325 at 1652.632 kb on + strand at 1652.632 kb on + strand, within DDA3937_RS07325 at 1652.633 kb on - strand, within DDA3937_RS07325 at 1652.634 kb on + strand, within DDA3937_RS07325 at 1652.635 kb on - strand, within DDA3937_RS07325 at 1652.635 kb on - strand, within DDA3937_RS07325 at 1652.635 kb on - strand, within DDA3937_RS07325 at 1652.635 kb on - strand at 1652.681 kb on + strand, within DDA3937_RS07325 at 1652.748 kb on - strand at 1652.842 kb on - strand at 1652.844 kb on + strand at 1652.845 kb on - strand at 1652.845 kb on - strand at 1652.860 kb on + strand at 1652.864 kb on + strand at 1652.864 kb on + strand at 1652.965 kb on - strand at 1652.969 kb on + strand at 1652.982 kb on + strand, within DDA3937_RS07330 at 1652.982 kb on + strand, within DDA3937_RS07330 at 1652.982 kb on + strand, within DDA3937_RS07330 at 1652.983 kb on - strand, within DDA3937_RS07330 at 1652.983 kb on - strand, within DDA3937_RS07330 at 1652.984 kb on + strand, within DDA3937_RS07330 at 1652.985 kb on - strand, within DDA3937_RS07330 at 1652.986 kb on + strand, within DDA3937_RS07330 at 1652.987 kb on - strand, within DDA3937_RS07330 at 1652.987 kb on - strand, within DDA3937_RS07330
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 1,650,099 + DDA3937_RS07315 0.40 -1.2 1,650,099 + DDA3937_RS07315 0.40 -0.2 1,650,099 + DDA3937_RS07315 0.40 -1.4 1,650,099 + DDA3937_RS07315 0.40 +0.8 1,650,099 + DDA3937_RS07315 0.40 +0.5 1,650,099 + DDA3937_RS07315 0.40 -0.9 1,650,099 + DDA3937_RS07315 0.40 -0.7 1,650,099 + DDA3937_RS07315 0.40 +0.1 1,650,099 + DDA3937_RS07315 0.40 +0.1 1,650,305 + DDA3937_RS07315 0.53 +0.9 1,650,311 + DDA3937_RS07315 0.54 +0.2 1,650,393 + DDA3937_RS07315 0.59 -0.9 1,650,394 - DDA3937_RS07315 0.59 -0.9 1,650,641 + DDA3937_RS07315 0.75 -1.7 1,650,642 - DDA3937_RS07315 0.75 -2.3 1,650,768 + DDA3937_RS07315 0.83 -2.5 1,650,768 + DDA3937_RS07315 0.83 -1.7 1,650,768 + DDA3937_RS07315 0.83 -0.9 1,650,768 + DDA3937_RS07315 0.83 -1.6 1,650,768 + DDA3937_RS07315 0.83 -2.3 1,650,768 + DDA3937_RS07315 0.83 +0.0 1,650,769 - DDA3937_RS07315 0.84 -2.0 1,650,769 - DDA3937_RS07315 0.84 -2.6 1,650,769 - DDA3937_RS07315 0.84 +1.6 1,650,805 - DDA3937_RS07315 0.86 +0.6 1,650,924 + +0.0 1,650,925 - -2.7 1,650,925 - +2.6 1,650,962 + -0.2 1,650,962 + -0.6 1,650,963 - +2.4 1,650,963 - +1.4 1,651,024 + -0.6 1,651,024 + -1.6 1,651,024 + +2.1 1,651,024 + -2.7 1,651,025 - +4.1 1,651,077 + -0.0 1,651,078 - -1.4 1,651,100 + +0.2 1,651,101 - -1.9 1,651,116 + +0.0 1,651,116 + -1.0 1,651,116 + +3.1 1,651,116 + -0.7 1,651,116 + -0.0 1,651,116 + -2.9 1,651,116 + -1.2 1,651,117 - -1.9 1,651,117 - -0.4 1,651,117 - -2.7 1,651,117 - +0.9 1,651,209 + DDA3937_RS07320 0.13 -2.2 1,651,230 + DDA3937_RS07320 0.15 +0.3 1,651,231 - DDA3937_RS07320 0.15 +0.2 1,651,267 + DDA3937_RS07320 0.19 -1.9 1,651,267 + DDA3937_RS07320 0.19 -2.0 1,651,267 + DDA3937_RS07320 0.19 -2.2 1,651,267 + DDA3937_RS07320 0.19 -2.4 1,651,270 - DDA3937_RS07320 0.20 -2.4 1,651,270 - DDA3937_RS07320 0.20 -3.0 1,651,343 + DDA3937_RS07320 0.28 -0.9 1,651,343 + DDA3937_RS07320 0.28 -3.5 1,651,344 - DDA3937_RS07320 0.28 +1.3 1,651,349 - DDA3937_RS07320 0.28 -3.1 1,651,386 + DDA3937_RS07320 0.33 -2.0 1,651,387 - DDA3937_RS07320 0.33 -0.8 1,651,508 + DDA3937_RS07320 0.46 -1.6 1,651,545 + DDA3937_RS07320 0.50 +0.1 1,651,596 - DDA3937_RS07320 0.56 +0.1 1,651,596 - DDA3937_RS07320 0.56 -1.7 1,651,649 - DDA3937_RS07320 0.62 -1.7 1,651,649 - DDA3937_RS07320 0.62 +0.5 1,651,708 + DDA3937_RS07320 0.68 +1.2 1,651,716 + DDA3937_RS07320 0.69 +0.1 1,651,717 - DDA3937_RS07320 0.69 -1.7 1,651,780 - DDA3937_RS07320 0.76 +2.2 1,651,789 + DDA3937_RS07320 0.77 -3.5 1,651,790 - DDA3937_RS07320 0.77 +0.0 1,651,800 + DDA3937_RS07320 0.79 -2.9 1,651,801 - DDA3937_RS07320 0.79 -1.4 1,651,815 + DDA3937_RS07320 0.80 +2.5 1,651,816 - DDA3937_RS07320 0.80 -2.7 1,651,816 - DDA3937_RS07320 0.80 -2.3 1,651,826 - DDA3937_RS07320 0.81 -3.0 1,651,827 + DDA3937_RS07320 0.82 -2.7 1,651,827 + DDA3937_RS07320 0.82 +1.3 1,651,828 - -0.6 1,651,857 + DDA3937_RS07320 0.85 +0.9 1,651,876 + DDA3937_RS07320 0.87 +0.9 1,651,876 + DDA3937_RS07320 0.87 +1.4 1,651,876 + DDA3937_RS07320 0.87 -1.4 1,651,876 + -0.6 1,651,877 - DDA3937_RS07320 0.87 -2.0 1,651,877 - DDA3937_RS07320 0.87 +1.0 1,651,877 - DDA3937_RS07320 0.87 +0.9 1,651,879 - DDA3937_RS07320 0.87 +0.8 1,651,966 + -1.7 1,651,967 - -2.4 1,651,969 + -0.8 1,651,969 + -0.1 1,651,969 + -0.2 1,651,969 + -2.0 1,651,969 + -1.4 1,651,969 + -0.9 1,651,969 + +2.2 1,651,970 - +0.8 1,651,970 - -1.6 1,651,970 - +1.3 1,651,970 - -2.0 1,651,971 + +2.1 1,651,972 - +0.3 1,651,972 - -1.5 1,651,972 - +2.4 1,651,991 - -1.6 1,651,998 + -0.1 1,651,998 + -1.2 1,651,999 - +0.9 1,652,001 - +3.1 1,652,001 - -0.9 1,652,005 + -1.6 1,652,006 - -1.9 1,652,010 - +1.2 1,652,015 - -0.9 1,652,085 - +0.6 1,652,085 - +0.6 1,652,185 + -3.0 1,652,185 + -0.6 1,652,185 + -1.1 1,652,185 + -0.6 1,652,185 + -2.7 1,652,186 - -0.6 1,652,188 + +0.8 1,652,189 - -1.4 1,652,189 - +0.7 1,652,189 - -0.9 1,652,194 + -2.7 1,652,250 + +0.2 1,652,250 + -1.6 1,652,250 + +2.4 1,652,251 - -2.1 1,652,251 - -2.3 1,652,251 - -1.4 1,652,251 - +2.8 1,652,251 - -2.9 1,652,251 - +0.7 1,652,252 + -1.9 1,652,252 + -2.0 1,652,253 - -0.5 1,652,253 - -0.7 1,652,253 - -0.6 1,652,253 - -0.6 1,652,284 - -0.1 1,652,300 + -2.2 1,652,301 - -2.6 1,652,301 - -0.3 1,652,312 + -2.0 1,652,313 - -0.2 1,652,313 - +0.4 1,652,319 + -1.4 1,652,320 - -1.4 1,652,320 - +2.0 1,652,511 + DDA3937_RS07325 0.45 -2.8 1,652,522 - DDA3937_RS07325 0.47 +0.2 1,652,526 + DDA3937_RS07325 0.48 -2.7 1,652,526 + DDA3937_RS07325 0.48 -2.0 1,652,566 - DDA3937_RS07325 0.56 -1.6 1,652,587 - DDA3937_RS07325 0.60 -3.0 1,652,632 + DDA3937_RS07325 0.70 -1.4 1,652,632 + +3.0 1,652,632 + DDA3937_RS07325 0.70 -2.2 1,652,633 - DDA3937_RS07325 0.70 -1.7 1,652,634 + DDA3937_RS07325 0.70 +0.3 1,652,635 - DDA3937_RS07325 0.70 -2.7 1,652,635 - DDA3937_RS07325 0.70 -3.5 1,652,635 - DDA3937_RS07325 0.70 -2.5 1,652,635 - +0.1 1,652,681 + DDA3937_RS07325 0.80 -2.1 1,652,748 - -1.6 1,652,842 - -1.7 1,652,844 + -0.2 1,652,845 - -2.4 1,652,845 - +2.6 1,652,860 + -2.7 1,652,864 + -2.7 1,652,864 + +1.4 1,652,965 - -1.4 1,652,969 + +0.6 1,652,982 + DDA3937_RS07330 0.10 +3.0 1,652,982 + DDA3937_RS07330 0.10 -1.4 1,652,982 + DDA3937_RS07330 0.10 -1.0 1,652,983 - DDA3937_RS07330 0.11 -1.9 1,652,983 - DDA3937_RS07330 0.11 +1.4 1,652,984 + DDA3937_RS07330 0.11 -2.0 1,652,985 - DDA3937_RS07330 0.11 +0.8 1,652,986 + DDA3937_RS07330 0.11 -0.7 1,652,987 - DDA3937_RS07330 0.11 -3.7 1,652,987 - DDA3937_RS07330 0.11 +0.7
Or see this region's nucleotide sequence