Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07270

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,638,814	+				-0.2
1,638,845	+		DDA3937_RS07265	0.87	-1.3
1,638,860	-		DDA3937_RS07265	0.88	+2.0
1,638,860	-				-0.6
1,638,860	-		DDA3937_RS07265	0.88	-2.3
1,638,962	-				-2.3
1,638,962	-				-1.4
1,639,131	-				-0.9
1,639,246	+				+1.0
1,639,260	+				-1.7
1,639,266	-				-0.2
1,639,319	+				-2.2
1,639,320	-				+2.4
1,639,320	-				+2.1
1,639,356	+				-0.0
1,639,357	-				+2.5
1,639,376	+				-0.4
1,639,377	-				-3.1
1,639,429	+				+1.0
1,639,429	+				+0.6
1,639,430	-				-1.6
1,639,524	+				+0.1
1,639,524	+				-1.9
1,639,525	-				+0.5
1,639,557	-				+1.4
1,639,583	+				+0.4
1,639,584	-				-0.5
1,639,584	-				-0.3
1,639,587	+				-3.0
1,639,588	-				-0.2
1,639,628	+				+3.3
1,639,628	+				-0.9
1,639,629	-				-2.0
1,639,629	-				+0.2
1,639,629	-				-1.4
1,639,629	-				-1.2
1,639,631	-				-0.5
1,639,631	-				+0.4
1,639,631	-				-4.0
1,639,730	-				+0.3
1,639,730	-				+0.4
1,639,748	+				-0.7
1,639,748	+				-1.2
1,639,749	-				-0.4
1,639,754	+				+0.6
1,639,754	+				-0.2
1,639,754	+				-2.0
1,639,754	+				-0.4
1,639,754	+				-1.4
1,639,755	-				-1.4
1,639,766	+				+0.4
1,639,766	+				-0.8
1,639,766	+				+1.6
1,639,767	-				+1.6
1,639,767	-				-0.9
1,639,767	-				-1.4
1,639,767	-				-1.8
1,639,767	-				+0.9
1,639,767	-				-1.9
1,639,785	+				-2.2
1,639,820	+				+0.6
1,639,820	+				+0.6
1,639,821	-				+1.8
1,639,840	+				-2.7
1,639,840	+				+1.8
1,639,840	+				+0.7
1,639,860	+				-1.1
1,639,860	+				+0.7
1,640,142	+		DDA3937_RS07270	0.23	+0.8
1,640,142	+		DDA3937_RS07270	0.23	+2.4
1,640,142	+		DDA3937_RS07270	0.23	+4.2
1,640,143	-		DDA3937_RS07270	0.23	-0.6
1,640,144	+		DDA3937_RS07270	0.23	+0.1
1,640,144	+		DDA3937_RS07270	0.23	-2.9
1,640,144	+		DDA3937_RS07270	0.23	+2.2
1,640,178	+		DDA3937_RS07270	0.25	-0.9
1,640,178	+		DDA3937_RS07270	0.25	-0.7
1,640,179	-		DDA3937_RS07270	0.25	-0.5
1,640,179	-		DDA3937_RS07270	0.25	-1.2
1,640,232	+		DDA3937_RS07270	0.28	+1.2
1,640,436	-		DDA3937_RS07270	0.40	-1.8
1,640,445	+		DDA3937_RS07270	0.41	-1.9
1,640,445	+		DDA3937_RS07270	0.41	+1.3
1,640,445	+		DDA3937_RS07270	0.41	-2.7
1,640,446	-		DDA3937_RS07270	0.41	-0.8
1,640,446	-		DDA3937_RS07270	0.41	+3.4
1,640,446	-		DDA3937_RS07270	0.41	+0.6
1,640,446	-		DDA3937_RS07270	0.41	-1.4
1,640,464	-		DDA3937_RS07270	0.42	-0.7
1,640,485	+		DDA3937_RS07270	0.43	-2.4
1,640,486	-		DDA3937_RS07270	0.43	-2.2
1,640,571	+		DDA3937_RS07270	0.48	+1.5
1,640,571	+		DDA3937_RS07270	0.48	+1.6
1,640,571	+		DDA3937_RS07270	0.48	-1.7
1,640,571	+		DDA3937_RS07270	0.48	-1.7
1,640,571	+		DDA3937_RS07270	0.48	-2.5
1,640,571	+		DDA3937_RS07270	0.48	-0.2
1,640,572	+		DDA3937_RS07270	0.48	+1.0
1,640,572	-		DDA3937_RS07270	0.48	+2.1
1,640,572	-		DDA3937_RS07270	0.48	-0.5
1,640,572	-		DDA3937_RS07270	0.48	-1.2
1,640,572	-		DDA3937_RS07270	0.48	-0.9
1,640,572	-		DDA3937_RS07270	0.48	-1.7
1,640,572	-		DDA3937_RS07270	0.48	-0.3
1,640,572	-		DDA3937_RS07270	0.48	+0.5
1,640,572	-		DDA3937_RS07270	0.48	+0.9
1,640,587	-		DDA3937_RS07270	0.49	-0.0
1,640,668	+		DDA3937_RS07270	0.54	-2.6
1,640,668	+		DDA3937_RS07270	0.54	+2.7
1,640,669	-		DDA3937_RS07270	0.54	-1.6
1,640,669	-		DDA3937_RS07270	0.54	+1.2
1,640,753	+		DDA3937_RS07270	0.59	-0.9
1,640,754	-		DDA3937_RS07270	0.59	+0.2
1,640,868	+		DDA3937_RS07270	0.66	+1.1
1,640,868	+		DDA3937_RS07270	0.66	+0.5
1,640,868	+		DDA3937_RS07270	0.66	-1.0
1,640,928	+				-0.9
1,640,929	-		DDA3937_RS07270	0.69	-1.4
1,640,929	-		DDA3937_RS07270	0.69	+0.8
1,640,929	-		DDA3937_RS07270	0.69	+0.1
1,641,079	+		DDA3937_RS07270	0.78	+0.3
1,641,080	-		DDA3937_RS07270	0.78	-1.2
1,641,140	+		DDA3937_RS07270	0.82	-1.6
1,641,140	+		DDA3937_RS07270	0.82	+0.7
1,641,140	+		DDA3937_RS07270	0.82	-3.0
1,641,140	+		DDA3937_RS07270	0.82	-1.0
1,641,141	-		DDA3937_RS07270	0.82	+1.5
1,641,141	-		DDA3937_RS07270	0.82	-3.7
1,641,141	-		DDA3937_RS07270	0.82	-0.3
1,641,141	-		DDA3937_RS07270	0.82	-1.9
1,641,141	-		DDA3937_RS07270	0.82	-1.9
1,641,212	+		DDA3937_RS07270	0.86	-1.4
1,641,213	-		DDA3937_RS07270	0.86	-1.0
1,641,252	+		DDA3937_RS07270	0.89	+2.0
1,641,252	+		DDA3937_RS07270	0.89	-0.9
1,641,265	-		DDA3937_RS07270	0.89	-2.9
1,641,273	+		DDA3937_RS07270	0.90	-1.2
1,641,273	+		DDA3937_RS07270	0.90	+2.2
1,641,273	+		DDA3937_RS07270	0.90	+2.1
1,641,274	-		DDA3937_RS07270	0.90	+1.8
1,641,274	-		DDA3937_RS07270	0.90	+2.4
1,641,499	+				+0.9
1,641,499	+				+0.6
1,641,500	-				-0.9
1,641,500	-				-2.4
1,641,500	-				+0.6
1,641,500	-				+1.7
1,641,517	-				+1.0
1,641,553	-				+1.3
1,641,565	+				-2.2
1,641,565	+				-1.4
1,641,566	-				-1.4
1,641,570	-				-1.6
1,641,570	-				+2.3
1,641,570	-				+1.7
1,641,570	-				+2.7
1,641,570	-				+0.4
1,641,586	-				-1.4
1,641,586	-				-1.9
1,641,588	+				+0.8
1,641,588	+				-0.8
1,641,588	+				+1.1
1,641,588	+				+0.4
1,641,589	-				-1.1
1,641,603	+				-3.9
1,641,603	+				-0.6
1,641,603	+				-0.3
1,641,603	+				-0.2
1,641,603	+				-0.4
1,641,603	+				+1.6
1,641,604	-				-1.0
1,641,604	-				-0.9
1,641,604	-				+0.8
1,641,604	-				-2.4
1,641,604	-				+0.4
1,641,604	-				-1.7
1,641,604	-				-2.5
1,641,604	-				+0.6
1,641,604	-				+1.9
1,641,604	-				-1.4
1,641,604	-				+3.9
1,641,605	+				+0.4
1,641,605	+				+0.1
1,641,606	-				-3.0
1,641,606	-				-2.8
1,641,635	-				-0.8
1,641,645	-				-2.7
1,641,645	-				+1.4
1,641,645	-				+0.3
1,641,647	+				+0.9
1,641,648	-				+0.9
1,641,648	-				+0.6
1,641,651	-				-0.6
1,641,676	-				-0.7
1,641,703	+				-1.4
1,641,704	-				-1.7
1,641,705	+				+0.0
1,641,732	+				+2.2
1,641,732	+				+0.6
1,641,733	-				+1.2
1,641,733	-				-1.2
1,641,733	-				+2.5
1,641,766	+		DDA3937_RS07275	0.13	+2.5
1,641,766	+		DDA3937_RS07275	0.13	-1.7
1,641,766	+		DDA3937_RS07275	0.13	-3.2
1,641,766	+		DDA3937_RS07275	0.13	+0.8
1,641,766	+		DDA3937_RS07275	0.13	-3.2
1,641,766	+		DDA3937_RS07275	0.13	+2.1
1,641,766	+		DDA3937_RS07275	0.13	+2.5
1,641,767	-		DDA3937_RS07275	0.13	-3.2
1,641,767	-		DDA3937_RS07275	0.13	-1.4
1,641,767	-		DDA3937_RS07275	0.13	-1.7
1,641,767	-		DDA3937_RS07275	0.13	+0.4
1,641,823	+		DDA3937_RS07275	0.20	-0.2
1,641,824	-		DDA3937_RS07275	0.20	+1.4
1,641,829	-		DDA3937_RS07275	0.21	+0.2
1,641,859	+		DDA3937_RS07275	0.24	-3.0
1,641,859	+		DDA3937_RS07275	0.24	+3.5
1,641,859	+		DDA3937_RS07275	0.24	+1.2
1,641,860	-		DDA3937_RS07275	0.24	-3.8
1,641,860	-		DDA3937_RS07275	0.24	-1.7
1,641,860	-		DDA3937_RS07275	0.24	+1.0
1,641,861	+		DDA3937_RS07275	0.25	+0.1
1,641,862	-		DDA3937_RS07275	0.25	-1.9
1,641,862	-		DDA3937_RS07275	0.25	-3.0
1,641,862	-		DDA3937_RS07275	0.25	+1.9
1,641,919	+		DDA3937_RS07275	0.32	-2.8
1,641,919	+		DDA3937_RS07275	0.32	-1.0
1,641,919	+		DDA3937_RS07275	0.32	+0.6
1,641,920	-		DDA3937_RS07275	0.32	+0.9
1,641,983	+		DDA3937_RS07275	0.40	-0.5
1,642,021	+		DDA3937_RS07275	0.45	+0.8
1,642,021	+		DDA3937_RS07275	0.45	-0.9
1,642,021	+		DDA3937_RS07275	0.45	-0.7
1,642,021	+		DDA3937_RS07275	0.45	+0.1
1,642,022	-		DDA3937_RS07275	0.45	-0.6
1,642,103	+		DDA3937_RS07275	0.55	-0.4
1,642,125	+		DDA3937_RS07275	0.58	-2.3
1,642,125	+		DDA3937_RS07275	0.58	-1.6
1,642,125	+		DDA3937_RS07275	0.58	+0.8
1,642,125	+		DDA3937_RS07275	0.58	-2.0
1,642,125	+		DDA3937_RS07275	0.58	+0.6
1,642,148	-		DDA3937_RS07275	0.61	-0.7
1,642,159	+		DDA3937_RS07275	0.62	+1.3
1,642,160	-		DDA3937_RS07275	0.62	-0.6
1,642,160	-		DDA3937_RS07275	0.62	-1.5
1,642,160	-		DDA3937_RS07275	0.62	+0.4
1,642,160	-		DDA3937_RS07275	0.62	-1.2
1,642,160	-		DDA3937_RS07275	0.62	+1.0
1,642,181	-		DDA3937_RS07275	0.65	-0.4
1,642,241	-		DDA3937_RS07275	0.72	-1.2
1,642,251	-		DDA3937_RS07275	0.73	+0.6
1,642,357	+		DDA3937_RS07275	0.87	-0.8
1,642,381	+		DDA3937_RS07275	0.90	-2.5
1,642,421	+				-1.2
1,642,441	+				-0.6