Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS06955 and DDA3937_RS06960 overlap by 1 nucleotides DDA3937_RS06960 and DDA3937_RS06965 overlap by 4 nucleotides DDA3937_RS06965 and DDA3937_RS06970 are separated by 158 nucleotides
DDA3937_RS06955: DDA3937_RS06955 - PAAR domain-containing protein, at 1,557,550 to 1,558,920
_RS06955
DDA3937_RS06960: DDA3937_RS06960 - ankyrin repeat domain-containing protein, at 1,558,920 to 1,559,699
_RS06960
DDA3937_RS06965: DDA3937_RS06965 - ankyrin repeat domain-containing protein, at 1,559,696 to 1,560,463
_RS06965
DDA3937_RS06970: DDA3937_RS06970 - DUF4123 domain-containing protein, at 1,560,622 to 1,561,590
_RS06970
Position (kb) 1558
1559
1560 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 1557.999 kb on - strand, within DDA3937_RS06955 at 1558.001 kb on + strand, within DDA3937_RS06955 at 1558.001 kb on + strand, within DDA3937_RS06955 at 1558.001 kb on + strand, within DDA3937_RS06955 at 1558.002 kb on - strand, within DDA3937_RS06955 at 1558.002 kb on - strand, within DDA3937_RS06955 at 1558.002 kb on - strand, within DDA3937_RS06955 at 1558.008 kb on + strand, within DDA3937_RS06955 at 1558.009 kb on - strand, within DDA3937_RS06955 at 1558.107 kb on + strand, within DDA3937_RS06955 at 1558.107 kb on + strand, within DDA3937_RS06955 at 1558.107 kb on + strand, within DDA3937_RS06955 at 1558.107 kb on + strand, within DDA3937_RS06955 at 1558.108 kb on - strand, within DDA3937_RS06955 at 1558.132 kb on + strand, within DDA3937_RS06955 at 1558.132 kb on + strand, within DDA3937_RS06955 at 1558.133 kb on - strand, within DDA3937_RS06955 at 1558.133 kb on - strand, within DDA3937_RS06955 at 1558.133 kb on - strand, within DDA3937_RS06955 at 1558.133 kb on - strand, within DDA3937_RS06955 at 1558.161 kb on + strand, within DDA3937_RS06955 at 1558.161 kb on + strand at 1558.161 kb on + strand, within DDA3937_RS06955 at 1558.162 kb on - strand, within DDA3937_RS06955 at 1558.162 kb on - strand, within DDA3937_RS06955 at 1558.162 kb on - strand, within DDA3937_RS06955 at 1558.162 kb on - strand, within DDA3937_RS06955 at 1558.162 kb on - strand, within DDA3937_RS06955 at 1558.162 kb on - strand, within DDA3937_RS06955 at 1558.167 kb on - strand, within DDA3937_RS06955 at 1558.212 kb on + strand, within DDA3937_RS06955 at 1558.213 kb on - strand, within DDA3937_RS06955 at 1558.213 kb on - strand, within DDA3937_RS06955 at 1558.214 kb on + strand, within DDA3937_RS06955 at 1558.214 kb on + strand, within DDA3937_RS06955 at 1558.215 kb on - strand, within DDA3937_RS06955 at 1558.233 kb on + strand, within DDA3937_RS06955 at 1558.239 kb on + strand, within DDA3937_RS06955 at 1558.248 kb on + strand, within DDA3937_RS06955 at 1558.248 kb on + strand, within DDA3937_RS06955 at 1558.280 kb on + strand, within DDA3937_RS06955 at 1558.284 kb on + strand, within DDA3937_RS06955 at 1558.285 kb on - strand, within DDA3937_RS06955 at 1558.285 kb on - strand, within DDA3937_RS06955 at 1558.293 kb on + strand, within DDA3937_RS06955 at 1558.293 kb on + strand, within DDA3937_RS06955 at 1558.293 kb on + strand, within DDA3937_RS06955 at 1558.294 kb on - strand at 1558.294 kb on - strand, within DDA3937_RS06955 at 1558.294 kb on - strand, within DDA3937_RS06955 at 1558.294 kb on - strand, within DDA3937_RS06955 at 1558.299 kb on + strand, within DDA3937_RS06955 at 1558.321 kb on - strand at 1558.332 kb on + strand, within DDA3937_RS06955 at 1558.340 kb on + strand, within DDA3937_RS06955 at 1558.340 kb on + strand, within DDA3937_RS06955 at 1558.350 kb on + strand, within DDA3937_RS06955 at 1558.362 kb on + strand, within DDA3937_RS06955 at 1558.382 kb on + strand, within DDA3937_RS06955 at 1558.382 kb on + strand, within DDA3937_RS06955 at 1558.402 kb on + strand, within DDA3937_RS06955 at 1558.403 kb on - strand, within DDA3937_RS06955 at 1558.403 kb on - strand, within DDA3937_RS06955 at 1558.403 kb on - strand, within DDA3937_RS06955 at 1558.403 kb on - strand, within DDA3937_RS06955 at 1558.404 kb on + strand, within DDA3937_RS06955 at 1558.445 kb on + strand, within DDA3937_RS06955 at 1558.445 kb on + strand, within DDA3937_RS06955 at 1558.445 kb on + strand, within DDA3937_RS06955 at 1558.446 kb on - strand, within DDA3937_RS06955 at 1558.461 kb on + strand, within DDA3937_RS06955 at 1558.461 kb on + strand, within DDA3937_RS06955 at 1558.462 kb on - strand, within DDA3937_RS06955 at 1558.462 kb on - strand, within DDA3937_RS06955 at 1558.520 kb on + strand, within DDA3937_RS06955 at 1558.520 kb on + strand, within DDA3937_RS06955 at 1558.528 kb on + strand, within DDA3937_RS06955 at 1558.529 kb on - strand at 1558.531 kb on - strand, within DDA3937_RS06955 at 1558.531 kb on - strand, within DDA3937_RS06955 at 1558.536 kb on + strand, within DDA3937_RS06955 at 1558.569 kb on + strand, within DDA3937_RS06955 at 1558.608 kb on - strand, within DDA3937_RS06955 at 1558.611 kb on + strand, within DDA3937_RS06955 at 1558.611 kb on + strand, within DDA3937_RS06955 at 1558.625 kb on + strand, within DDA3937_RS06955 at 1558.641 kb on + strand, within DDA3937_RS06955 at 1558.644 kb on + strand, within DDA3937_RS06955 at 1558.644 kb on + strand, within DDA3937_RS06955 at 1558.644 kb on + strand, within DDA3937_RS06955 at 1558.644 kb on + strand, within DDA3937_RS06955 at 1558.644 kb on + strand, within DDA3937_RS06955 at 1558.645 kb on - strand, within DDA3937_RS06955 at 1558.645 kb on - strand, within DDA3937_RS06955 at 1558.645 kb on - strand, within DDA3937_RS06955 at 1558.645 kb on - strand, within DDA3937_RS06955 at 1558.645 kb on - strand, within DDA3937_RS06955 at 1558.657 kb on + strand, within DDA3937_RS06955 at 1558.674 kb on - strand, within DDA3937_RS06955 at 1558.682 kb on + strand, within DDA3937_RS06955 at 1558.682 kb on + strand, within DDA3937_RS06955 at 1558.683 kb on - strand, within DDA3937_RS06955 at 1558.725 kb on + strand, within DDA3937_RS06955 at 1558.726 kb on - strand, within DDA3937_RS06955 at 1558.746 kb on + strand, within DDA3937_RS06955 at 1558.746 kb on + strand, within DDA3937_RS06955 at 1558.749 kb on + strand, within DDA3937_RS06955 at 1558.749 kb on + strand, within DDA3937_RS06955 at 1558.749 kb on + strand, within DDA3937_RS06955 at 1558.750 kb on - strand, within DDA3937_RS06955 at 1558.785 kb on - strand at 1558.785 kb on - strand at 1558.802 kb on + strand at 1558.803 kb on - strand at 1558.803 kb on - strand at 1558.806 kb on + strand at 1558.806 kb on + strand at 1558.807 kb on - strand at 1558.807 kb on - strand at 1558.827 kb on - strand at 1558.885 kb on - strand at 1558.908 kb on + strand at 1558.918 kb on + strand at 1558.955 kb on - strand at 1558.970 kb on - strand at 1559.345 kb on + strand, within DDA3937_RS06960 at 1559.445 kb on + strand, within DDA3937_RS06960 at 1559.445 kb on + strand, within DDA3937_RS06960 at 1559.445 kb on + strand, within DDA3937_RS06960 at 1559.445 kb on + strand, within DDA3937_RS06960 at 1559.467 kb on - strand, within DDA3937_RS06960 at 1559.507 kb on + strand, within DDA3937_RS06960 at 1559.512 kb on + strand, within DDA3937_RS06960 at 1559.512 kb on + strand, within DDA3937_RS06960 at 1559.512 kb on + strand, within DDA3937_RS06960 at 1559.512 kb on + strand, within DDA3937_RS06960 at 1559.512 kb on + strand, within DDA3937_RS06960 at 1559.513 kb on - strand, within DDA3937_RS06960 at 1559.513 kb on - strand, within DDA3937_RS06960 at 1559.513 kb on - strand, within DDA3937_RS06960 at 1559.513 kb on - strand, within DDA3937_RS06960 at 1559.513 kb on - strand, within DDA3937_RS06960 at 1559.514 kb on + strand, within DDA3937_RS06960 at 1559.514 kb on + strand, within DDA3937_RS06960 at 1559.514 kb on + strand, within DDA3937_RS06960 at 1559.514 kb on + strand, within DDA3937_RS06960 at 1559.514 kb on + strand, within DDA3937_RS06960 at 1559.514 kb on + strand, within DDA3937_RS06960 at 1559.515 kb on - strand, within DDA3937_RS06960 at 1559.528 kb on + strand, within DDA3937_RS06960 at 1559.531 kb on + strand, within DDA3937_RS06960 at 1559.531 kb on + strand, within DDA3937_RS06960 at 1559.532 kb on - strand, within DDA3937_RS06960 at 1559.555 kb on + strand, within DDA3937_RS06960 at 1559.556 kb on - strand, within DDA3937_RS06960 at 1559.556 kb on - strand, within DDA3937_RS06960 at 1559.560 kb on + strand, within DDA3937_RS06960 at 1559.560 kb on + strand, within DDA3937_RS06960 at 1559.560 kb on + strand, within DDA3937_RS06960 at 1559.577 kb on - strand, within DDA3937_RS06960 at 1559.577 kb on - strand, within DDA3937_RS06960 at 1559.577 kb on - strand, within DDA3937_RS06960 at 1559.591 kb on + strand, within DDA3937_RS06960 at 1559.591 kb on + strand, within DDA3937_RS06960 at 1559.608 kb on + strand, within DDA3937_RS06960 at 1559.620 kb on + strand, within DDA3937_RS06960 at 1559.621 kb on - strand, within DDA3937_RS06960 at 1559.650 kb on + strand at 1559.651 kb on - strand at 1559.681 kb on + strand at 1560.109 kb on + strand, within DDA3937_RS06965 at 1560.140 kb on - strand, within DDA3937_RS06965 at 1560.209 kb on + strand, within DDA3937_RS06965 at 1560.223 kb on - strand, within DDA3937_RS06965 at 1560.230 kb on + strand, within DDA3937_RS06965 at 1560.238 kb on + strand, within DDA3937_RS06965 at 1560.238 kb on + strand, within DDA3937_RS06965 at 1560.239 kb on - strand, within DDA3937_RS06965 at 1560.239 kb on - strand at 1560.252 kb on + strand, within DDA3937_RS06965 at 1560.330 kb on + strand, within DDA3937_RS06965 at 1560.354 kb on - strand, within DDA3937_RS06965 at 1560.373 kb on + strand, within DDA3937_RS06965 at 1560.384 kb on + strand at 1560.385 kb on - strand, within DDA3937_RS06965 at 1560.505 kb on - strand at 1560.505 kb on - strand at 1560.505 kb on - strand at 1560.600 kb on + strand at 1560.601 kb on - strand at 1560.619 kb on - strand at 1560.679 kb on + strand at 1560.679 kb on + strand at 1560.680 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 1,557,999 - DDA3937_RS06955 0.33 -0.4 1,558,001 + DDA3937_RS06955 0.33 -1.5 1,558,001 + DDA3937_RS06955 0.33 +1.0 1,558,001 + DDA3937_RS06955 0.33 +0.9 1,558,002 - DDA3937_RS06955 0.33 -2.0 1,558,002 - DDA3937_RS06955 0.33 +0.7 1,558,002 - DDA3937_RS06955 0.33 -3.1 1,558,008 + DDA3937_RS06955 0.33 +2.0 1,558,009 - DDA3937_RS06955 0.33 +1.1 1,558,107 + DDA3937_RS06955 0.41 +0.8 1,558,107 + DDA3937_RS06955 0.41 -2.5 1,558,107 + DDA3937_RS06955 0.41 -1.7 1,558,107 + DDA3937_RS06955 0.41 -2.0 1,558,108 - DDA3937_RS06955 0.41 +0.0 1,558,132 + DDA3937_RS06955 0.42 -1.5 1,558,132 + DDA3937_RS06955 0.42 -3.4 1,558,133 - DDA3937_RS06955 0.43 -1.8 1,558,133 - DDA3937_RS06955 0.43 +1.5 1,558,133 - DDA3937_RS06955 0.43 +2.0 1,558,133 - DDA3937_RS06955 0.43 -0.5 1,558,161 + DDA3937_RS06955 0.45 +0.5 1,558,161 + +3.2 1,558,161 + DDA3937_RS06955 0.45 -2.1 1,558,162 - DDA3937_RS06955 0.45 -0.3 1,558,162 - DDA3937_RS06955 0.45 -1.5 1,558,162 - DDA3937_RS06955 0.45 -1.1 1,558,162 - DDA3937_RS06955 0.45 -1.1 1,558,162 - DDA3937_RS06955 0.45 -2.0 1,558,162 - DDA3937_RS06955 0.45 -2.7 1,558,167 - DDA3937_RS06955 0.45 -2.0 1,558,212 + DDA3937_RS06955 0.48 -2.7 1,558,213 - DDA3937_RS06955 0.48 -0.2 1,558,213 - DDA3937_RS06955 0.48 -0.2 1,558,214 + DDA3937_RS06955 0.48 -0.5 1,558,214 + DDA3937_RS06955 0.48 -2.0 1,558,215 - DDA3937_RS06955 0.49 -1.1 1,558,233 + DDA3937_RS06955 0.50 -2.6 1,558,239 + DDA3937_RS06955 0.50 -0.4 1,558,248 + DDA3937_RS06955 0.51 -1.3 1,558,248 + DDA3937_RS06955 0.51 -3.1 1,558,280 + DDA3937_RS06955 0.53 -2.7 1,558,284 + DDA3937_RS06955 0.54 -1.3 1,558,285 - DDA3937_RS06955 0.54 -3.9 1,558,285 - DDA3937_RS06955 0.54 +0.9 1,558,293 + DDA3937_RS06955 0.54 -1.3 1,558,293 + DDA3937_RS06955 0.54 +0.6 1,558,293 + DDA3937_RS06955 0.54 -0.1 1,558,294 - -0.5 1,558,294 - DDA3937_RS06955 0.54 -3.1 1,558,294 - DDA3937_RS06955 0.54 +1.0 1,558,294 - DDA3937_RS06955 0.54 +0.6 1,558,299 + DDA3937_RS06955 0.55 +1.5 1,558,321 - -0.5 1,558,332 + DDA3937_RS06955 0.57 -1.5 1,558,340 + DDA3937_RS06955 0.58 -1.1 1,558,340 + DDA3937_RS06955 0.58 -0.1 1,558,350 + DDA3937_RS06955 0.58 -2.6 1,558,362 + DDA3937_RS06955 0.59 +0.3 1,558,382 + DDA3937_RS06955 0.61 +2.2 1,558,382 + DDA3937_RS06955 0.61 -1.5 1,558,402 + DDA3937_RS06955 0.62 -2.5 1,558,403 - DDA3937_RS06955 0.62 -1.5 1,558,403 - DDA3937_RS06955 0.62 -0.1 1,558,403 - DDA3937_RS06955 0.62 -2.4 1,558,403 - DDA3937_RS06955 0.62 +1.9 1,558,404 + DDA3937_RS06955 0.62 +2.5 1,558,445 + DDA3937_RS06955 0.65 -1.3 1,558,445 + DDA3937_RS06955 0.65 -3.6 1,558,445 + DDA3937_RS06955 0.65 -0.5 1,558,446 - DDA3937_RS06955 0.65 -0.7 1,558,461 + DDA3937_RS06955 0.66 -3.6 1,558,461 + DDA3937_RS06955 0.66 -2.3 1,558,462 - DDA3937_RS06955 0.67 -3.3 1,558,462 - DDA3937_RS06955 0.67 -1.1 1,558,520 + DDA3937_RS06955 0.71 -3.4 1,558,520 + DDA3937_RS06955 0.71 +0.6 1,558,528 + DDA3937_RS06955 0.71 -0.1 1,558,529 - -0.8 1,558,531 - DDA3937_RS06955 0.72 -0.8 1,558,531 - DDA3937_RS06955 0.72 -0.8 1,558,536 + DDA3937_RS06955 0.72 +2.7 1,558,569 + DDA3937_RS06955 0.74 +1.6 1,558,608 - DDA3937_RS06955 0.77 +0.7 1,558,611 + DDA3937_RS06955 0.77 -2.3 1,558,611 + DDA3937_RS06955 0.77 +3.9 1,558,625 + DDA3937_RS06955 0.78 -0.7 1,558,641 + DDA3937_RS06955 0.80 +2.2 1,558,644 + DDA3937_RS06955 0.80 -1.3 1,558,644 + DDA3937_RS06955 0.80 +0.2 1,558,644 + DDA3937_RS06955 0.80 -2.2 1,558,644 + DDA3937_RS06955 0.80 +0.5 1,558,644 + DDA3937_RS06955 0.80 +2.0 1,558,645 - DDA3937_RS06955 0.80 -4.0 1,558,645 - DDA3937_RS06955 0.80 -1.3 1,558,645 - DDA3937_RS06955 0.80 +0.9 1,558,645 - DDA3937_RS06955 0.80 -2.4 1,558,645 - DDA3937_RS06955 0.80 -1.0 1,558,657 + DDA3937_RS06955 0.81 +0.2 1,558,674 - DDA3937_RS06955 0.82 -1.8 1,558,682 + DDA3937_RS06955 0.83 +1.6 1,558,682 + DDA3937_RS06955 0.83 -2.2 1,558,683 - DDA3937_RS06955 0.83 -1.9 1,558,725 + DDA3937_RS06955 0.86 -1.7 1,558,726 - DDA3937_RS06955 0.86 +0.4 1,558,746 + DDA3937_RS06955 0.87 -1.8 1,558,746 + DDA3937_RS06955 0.87 +0.3 1,558,749 + DDA3937_RS06955 0.87 -1.2 1,558,749 + DDA3937_RS06955 0.87 -2.5 1,558,749 + DDA3937_RS06955 0.87 +4.2 1,558,750 - DDA3937_RS06955 0.88 -0.1 1,558,785 - -1.7 1,558,785 - +1.3 1,558,802 + +1.2 1,558,803 - -1.6 1,558,803 - -2.3 1,558,806 + +0.3 1,558,806 + -0.5 1,558,807 - -2.7 1,558,807 - -0.6 1,558,827 - +1.2 1,558,885 - -2.4 1,558,908 + +0.9 1,558,918 + +2.5 1,558,955 - -1.0 1,558,970 - -1.1 1,559,345 + DDA3937_RS06960 0.54 +0.1 1,559,445 + DDA3937_RS06960 0.67 -0.8 1,559,445 + DDA3937_RS06960 0.67 -1.6 1,559,445 + DDA3937_RS06960 0.67 -1.4 1,559,445 + DDA3937_RS06960 0.67 -1.5 1,559,467 - DDA3937_RS06960 0.70 -0.8 1,559,507 + DDA3937_RS06960 0.75 +1.9 1,559,512 + DDA3937_RS06960 0.76 -1.7 1,559,512 + DDA3937_RS06960 0.76 -3.1 1,559,512 + DDA3937_RS06960 0.76 -0.1 1,559,512 + DDA3937_RS06960 0.76 +2.1 1,559,512 + DDA3937_RS06960 0.76 +1.6 1,559,513 - DDA3937_RS06960 0.76 -1.4 1,559,513 - DDA3937_RS06960 0.76 -3.0 1,559,513 - DDA3937_RS06960 0.76 -1.5 1,559,513 - DDA3937_RS06960 0.76 -0.3 1,559,513 - DDA3937_RS06960 0.76 +0.1 1,559,514 + DDA3937_RS06960 0.76 -0.1 1,559,514 + DDA3937_RS06960 0.76 -0.6 1,559,514 + DDA3937_RS06960 0.76 -1.3 1,559,514 + DDA3937_RS06960 0.76 +0.2 1,559,514 + DDA3937_RS06960 0.76 -0.5 1,559,514 + DDA3937_RS06960 0.76 +1.5 1,559,515 - DDA3937_RS06960 0.76 -0.8 1,559,528 + DDA3937_RS06960 0.78 +0.4 1,559,531 + DDA3937_RS06960 0.78 +0.6 1,559,531 + DDA3937_RS06960 0.78 +0.9 1,559,532 - DDA3937_RS06960 0.78 -3.3 1,559,555 + DDA3937_RS06960 0.81 -0.7 1,559,556 - DDA3937_RS06960 0.82 -0.8 1,559,556 - DDA3937_RS06960 0.82 -1.6 1,559,560 + DDA3937_RS06960 0.82 -1.4 1,559,560 + DDA3937_RS06960 0.82 -3.2 1,559,560 + DDA3937_RS06960 0.82 +1.5 1,559,577 - DDA3937_RS06960 0.84 -2.1 1,559,577 - DDA3937_RS06960 0.84 -2.0 1,559,577 - DDA3937_RS06960 0.84 -0.3 1,559,591 + DDA3937_RS06960 0.86 -0.1 1,559,591 + DDA3937_RS06960 0.86 +0.1 1,559,608 + DDA3937_RS06960 0.88 +0.4 1,559,620 + DDA3937_RS06960 0.90 -2.0 1,559,621 - DDA3937_RS06960 0.90 -0.3 1,559,650 + +0.1 1,559,651 - -3.4 1,559,681 + -1.3 1,560,109 + DDA3937_RS06965 0.54 -0.1 1,560,140 - DDA3937_RS06965 0.58 -2.0 1,560,209 + DDA3937_RS06965 0.67 +1.7 1,560,223 - DDA3937_RS06965 0.69 -1.8 1,560,230 + DDA3937_RS06965 0.70 -1.7 1,560,238 + DDA3937_RS06965 0.71 -0.2 1,560,238 + DDA3937_RS06965 0.71 -1.2 1,560,239 - DDA3937_RS06965 0.71 -1.7 1,560,239 - +1.2 1,560,252 + DDA3937_RS06965 0.72 +1.6 1,560,330 + DDA3937_RS06965 0.83 -1.5 1,560,354 - DDA3937_RS06965 0.86 +1.1 1,560,373 + DDA3937_RS06965 0.88 -3.4 1,560,384 + -0.5 1,560,385 - DDA3937_RS06965 0.90 -0.2 1,560,505 - -0.0 1,560,505 - -3.0 1,560,505 - +0.9 1,560,600 + +0.7 1,560,601 - -0.8 1,560,619 - -2.6 1,560,679 + -3.5 1,560,679 + -0.5 1,560,680 - +1.0
Or see this region's nucleotide sequence