Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05735

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,278,865	+				+0.5
1,278,883	-				+2.1
1,278,888	+				-2.1
1,278,985	-				+0.2
1,279,007	-				-2.5
1,279,014	+				-1.2
1,279,053	+				-1.7
1,279,053	+				+3.1
1,279,055	+				+0.0
1,279,056	-				+2.2
1,279,074	+				-2.6
1,279,074	+				+1.2
1,279,074	+				+1.5
1,279,074	+				-0.1
1,279,074	+				+0.5
1,279,074	+				-1.1
1,279,075	-				-2.2
1,279,118	+				-1.1
1,279,119	-				+2.1
1,279,269	+				-2.3
1,279,270	-				+1.7
1,279,276	+				+2.0
1,279,276	+				-1.6
1,279,277	-				+1.4
1,279,329	-		DDA3937_RS21985	0.38	+0.1
1,279,329	-		DDA3937_RS21985	0.38	+0.3
1,279,329	-		DDA3937_RS21985	0.38	-1.3
1,279,339	+		DDA3937_RS21985	0.44	-3.4
1,279,339	+		DDA3937_RS21985	0.44	+1.7
1,279,339	+		DDA3937_RS21985	0.44	+0.5
1,279,339	+		DDA3937_RS21985	0.44	-3.0
1,279,339	+		DDA3937_RS21985	0.44	-1.2
1,279,340	-		DDA3937_RS21985	0.45	+2.4
1,279,340	-		DDA3937_RS21985	0.45	-1.9
1,279,340	-		DDA3937_RS21985	0.45	+1.6
1,279,340	-		DDA3937_RS21985	0.45	-2.1
1,279,340	-		DDA3937_RS21985	0.45	+1.5
1,279,340	-		DDA3937_RS21985	0.45	-2.6
1,279,368	-		DDA3937_RS21985	0.65	-2.3
1,279,368	-		DDA3937_RS21985	0.65	+1.3
1,279,368	-		DDA3937_RS21985	0.65	-1.5
1,279,368	-		DDA3937_RS21985	0.65	+0.3
1,279,407	+				-1.3
1,279,407	+				-1.5
1,279,407	+				-2.6
1,279,407	+				-1.5
1,279,408	-				-2.6
1,279,408	-				-0.5
1,279,408	-				-0.1
1,279,410	+				-0.3
1,279,410	+				+0.7
1,279,423	-				+0.0
1,279,423	-				+0.5
1,279,436	-				-0.1
1,279,517	-		DDA3937_RS05730	0.33	-2.5
1,279,517	-		DDA3937_RS05730	0.33	-0.1
1,279,519	+		DDA3937_RS05730	0.34	+0.8
1,279,519	+		DDA3937_RS05730	0.34	-1.4
1,279,520	-		DDA3937_RS05730	0.34	+0.5
1,279,520	-		DDA3937_RS05730	0.34	-3.0
1,279,520	-		DDA3937_RS05730	0.34	-1.1
1,279,520	-		DDA3937_RS05730	0.34	-0.6
1,279,555	+		DDA3937_RS05730	0.48	+1.4
1,279,555	+		DDA3937_RS05730	0.48	+0.8
1,279,555	+		DDA3937_RS05730	0.48	+0.5
1,279,555	+		DDA3937_RS05730	0.48	+0.5
1,279,555	+		DDA3937_RS05730	0.48	+2.6
1,279,555	+		DDA3937_RS05730	0.48	-1.3
1,279,555	+		DDA3937_RS05730	0.48	-2.6
1,279,556	-		DDA3937_RS05730	0.48	-0.5
1,279,556	-		DDA3937_RS05730	0.48	-2.8
1,279,556	-		DDA3937_RS05730	0.48	+1.4
1,279,556	-		DDA3937_RS05730	0.48	-2.7
1,279,561	+		DDA3937_RS05730	0.50	-0.5
1,279,562	-		DDA3937_RS05730	0.51	+0.3
1,279,582	+		DDA3937_RS05730	0.59	-1.3
1,279,582	+		DDA3937_RS05730	0.59	-2.6
1,279,582	+		DDA3937_RS05730	0.59	-0.2
1,279,582	+		DDA3937_RS05730	0.59	-1.1
1,279,583	-		DDA3937_RS05730	0.59	-2.6
1,279,583	-		DDA3937_RS05730	0.59	+2.5
1,279,583	-		DDA3937_RS05730	0.59	-3.0
1,279,583	-		DDA3937_RS05730	0.59	-0.3
1,279,617	-		DDA3937_RS05730	0.73	+0.8
1,279,618	+		DDA3937_RS05730	0.73	-1.4
1,279,623	+		DDA3937_RS05730	0.75	-1.0
1,279,624	-		DDA3937_RS05730	0.75	+0.2
1,279,624	-		DDA3937_RS05730	0.75	-2.3
1,279,661	-				-0.6
1,279,661	-				+0.1
1,279,713	-				-1.3
1,279,752	-				-0.1
1,279,759	-				-0.1
1,279,803	+				-0.3
1,279,847	+				+0.8
1,279,856	+				-0.7
1,279,857	-				-0.5
1,279,857	-				+1.0
1,279,858	+				+1.5
1,279,858	+				+0.7
1,279,859	-				-1.4
1,279,859	-				+0.6
1,279,859	-				-1.1
1,279,859	-				+2.5
1,279,891	+				-0.5
1,279,892	-				+0.5
1,279,892	-				+0.2
1,279,935	-				+1.8
1,279,962	+				-2.0
1,279,967	-				-2.5
1,280,000	+				+1.2
1,280,000	+				-0.8
1,280,000	+				+3.0
1,280,001	-				+1.5
1,280,061	-				+2.6
1,280,113	+				-3.0
1,280,114	-				+0.5
1,280,239	+		DDA3937_RS05735	0.12	+1.6
1,280,245	-		DDA3937_RS05735	0.12	-0.0
1,280,245	-		DDA3937_RS05735	0.12	-3.1
1,280,245	-		DDA3937_RS05735	0.12	-1.5
1,280,245	-		DDA3937_RS05735	0.12	-0.5
1,280,245	-		DDA3937_RS05735	0.12	-1.7
1,280,294	+		DDA3937_RS05735	0.14	+0.7
1,280,294	+		DDA3937_RS05735	0.14	-1.3
1,280,317	+		DDA3937_RS05735	0.14	-2.7
1,280,318	-		DDA3937_RS05735	0.14	+1.2
1,280,318	-		DDA3937_RS05735	0.14	+0.4
1,280,318	-		DDA3937_RS05735	0.14	+0.9
1,280,346	+		DDA3937_RS05735	0.15	-2.8
1,280,346	+		DDA3937_RS05735	0.15	-1.8
1,280,346	+		DDA3937_RS05735	0.15	+1.9
1,280,347	-		DDA3937_RS05735	0.15	-2.2
1,280,347	-		DDA3937_RS05735	0.15	+0.9
1,280,347	-		DDA3937_RS05735	0.15	-2.5
1,280,386	+				-0.1
1,280,386	+		DDA3937_RS05735	0.17	-0.5
1,280,387	-		DDA3937_RS05735	0.17	+0.9
1,280,387	-		DDA3937_RS05735	0.17	-2.4
1,280,390	-		DDA3937_RS05735	0.17	-2.6
1,280,390	-		DDA3937_RS05735	0.17	-1.5
1,280,390	-		DDA3937_RS05735	0.17	-1.4
1,280,390	-		DDA3937_RS05735	0.17	+0.1
1,280,390	-		DDA3937_RS05735	0.17	-3.3
1,280,390	-		DDA3937_RS05735	0.17	+3.5
1,280,390	-		DDA3937_RS05735	0.17	-1.3
1,280,431	-		DDA3937_RS05735	0.18	-0.5
1,280,431	-		DDA3937_RS05735	0.18	-1.7
1,280,437	+		DDA3937_RS05735	0.18	-1.9
1,280,437	+		DDA3937_RS05735	0.18	-2.7
1,280,438	-		DDA3937_RS05735	0.18	-2.4
1,280,438	-		DDA3937_RS05735	0.18	+0.8
1,280,469	-		DDA3937_RS05735	0.19	-2.4
1,280,500	+		DDA3937_RS05735	0.20	-1.6
1,280,500	+		DDA3937_RS05735	0.20	-1.7
1,280,501	-		DDA3937_RS05735	0.20	+0.8
1,280,501	-		DDA3937_RS05735	0.20	-0.8
1,280,547	-		DDA3937_RS05735	0.22	+0.1
1,280,566	-		DDA3937_RS05735	0.22	-1.4
1,280,652	+		DDA3937_RS05735	0.25	-0.5
1,280,652	+		DDA3937_RS05735	0.25	-1.8
1,280,652	+		DDA3937_RS05735	0.25	-0.3
1,280,652	+		DDA3937_RS05735	0.25	-1.1
1,280,652	+		DDA3937_RS05735	0.25	-0.7
1,280,680	+		DDA3937_RS05735	0.26	-1.7
1,280,681	-		DDA3937_RS05735	0.26	-1.3
1,280,681	-		DDA3937_RS05735	0.26	+0.1
1,280,681	-		DDA3937_RS05735	0.26	+0.8
1,280,681	-		DDA3937_RS05735	0.26	+0.5
1,280,706	+		DDA3937_RS05735	0.27	-0.1
1,280,748	+		DDA3937_RS05735	0.28	-3.0
1,280,749	-		DDA3937_RS05735	0.28	-0.9
1,280,749	-		DDA3937_RS05735	0.28	-1.5
1,280,749	-		DDA3937_RS05735	0.28	+0.5
1,280,749	-		DDA3937_RS05735	0.28	+0.4
1,280,749	-		DDA3937_RS05735	0.28	+0.8
1,280,887	+		DDA3937_RS05735	0.32	-0.7
1,280,888	-		DDA3937_RS05735	0.33	-3.1
1,280,941	+		DDA3937_RS05735	0.34	-3.1
1,280,999	+		DDA3937_RS05735	0.36	+0.7
1,280,999	+		DDA3937_RS05735	0.36	+0.6
1,280,999	+		DDA3937_RS05735	0.36	+0.4
1,280,999	+		DDA3937_RS05735	0.36	-1.1
1,280,999	+		DDA3937_RS05735	0.36	-3.0
1,281,000	-		DDA3937_RS05735	0.36	-3.3
1,281,000	-		DDA3937_RS05735	0.36	-1.0
1,281,000	-		DDA3937_RS05735	0.36	+2.0
1,281,000	-		DDA3937_RS05735	0.36	-1.1
1,281,018	-		DDA3937_RS05735	0.37	+1.8
1,281,018	-		DDA3937_RS05735	0.37	-2.8
1,281,190	+		DDA3937_RS05735	0.42	-0.5
1,281,229	-		DDA3937_RS05735	0.43	-2.9
1,281,231	+		DDA3937_RS05735	0.43	+1.9
1,281,232	-		DDA3937_RS05735	0.43	-0.1
1,281,232	-				+0.2
1,281,232	-		DDA3937_RS05735	0.43	+1.5
1,281,308	+		DDA3937_RS05735	0.46	-1.5
1,281,309	-		DDA3937_RS05735	0.46	-2.3
1,281,309	-		DDA3937_RS05735	0.46	-0.6
1,281,387	+		DDA3937_RS05735	0.48	+0.8
1,281,388	-		DDA3937_RS05735	0.48	-2.6
1,281,388	-		DDA3937_RS05735	0.48	+0.4
1,281,399	+		DDA3937_RS05735	0.49	+0.5
1,281,399	+		DDA3937_RS05735	0.49	-2.4
1,281,399	+		DDA3937_RS05735	0.49	+0.8
1,281,400	-		DDA3937_RS05735	0.49	-0.5
1,281,400	-		DDA3937_RS05735	0.49	+1.6
1,281,400	-		DDA3937_RS05735	0.49	+0.1
1,281,421	+		DDA3937_RS05735	0.49	+0.5
1,281,424	+		DDA3937_RS05735	0.50	-0.5
1,281,434	-		DDA3937_RS05735	0.50	-0.8
1,281,434	-		DDA3937_RS05735	0.50	-3.6
1,281,434	-		DDA3937_RS05735	0.50	-1.5
1,281,434	-		DDA3937_RS05735	0.50	-2.9
1,281,441	+		DDA3937_RS05735	0.50	-3.0
1,281,441	+		DDA3937_RS05735	0.50	-1.8
1,281,441	+		DDA3937_RS05735	0.50	-0.5
1,281,441	+		DDA3937_RS05735	0.50	-1.1
1,281,441	+		DDA3937_RS05735	0.50	-3.2
1,281,442	-		DDA3937_RS05735	0.50	-2.8
1,281,442	-		DDA3937_RS05735	0.50	+0.0
1,281,442	-		DDA3937_RS05735	0.50	+1.9
1,281,442	-		DDA3937_RS05735	0.50	+2.5
1,281,451	+		DDA3937_RS05735	0.50	+0.3
1,281,452	-		DDA3937_RS05735	0.50	-0.8
1,281,452	-		DDA3937_RS05735	0.50	-0.3
1,281,587	+		DDA3937_RS05735	0.55	-1.0
1,281,587	+		DDA3937_RS05735	0.55	-2.1
1,281,588	-		DDA3937_RS05735	0.55	-2.0
1,281,612	+		DDA3937_RS05735	0.56	-1.0
1,281,651	-		DDA3937_RS05735	0.57	-1.1
1,281,651	-		DDA3937_RS05735	0.57	-2.4
1,281,656	+		DDA3937_RS05735	0.57	-2.0
1,281,877	+		DDA3937_RS05735	0.64	-1.3
1,281,945	+		DDA3937_RS05735	0.66	-2.8
1,281,945	+		DDA3937_RS05735	0.66	-0.8
1,281,945	+		DDA3937_RS05735	0.66	-2.5
1,281,945	+		DDA3937_RS05735	0.66	-3.5
1,281,946	-		DDA3937_RS05735	0.66	-1.7
1,281,946	-		DDA3937_RS05735	0.66	-0.4
1,281,946	-		DDA3937_RS05735	0.66	+0.4
1,281,946	-		DDA3937_RS05735	0.66	+1.9
1,281,946	-		DDA3937_RS05735	0.66	-3.3
1,281,946	-		DDA3937_RS05735	0.66	-0.3
1,281,999	+		DDA3937_RS05735	0.68	-2.3
1,282,032	+		DDA3937_RS05735	0.69	-0.9
1,282,033	-		DDA3937_RS05735	0.69	-1.6
1,282,038	+		DDA3937_RS05735	0.69	-1.1
1,282,138	+		DDA3937_RS05735	0.72	-2.6
1,282,138	+		DDA3937_RS05735	0.72	-4.4
1,282,138	+		DDA3937_RS05735	0.72	-0.4
1,282,138	+		DDA3937_RS05735	0.72	-0.2
1,282,138	+		DDA3937_RS05735	0.72	-0.5
1,282,142	-		DDA3937_RS05735	0.72	+1.4
1,282,169	-		DDA3937_RS05735	0.73	+0.2
1,282,169	-		DDA3937_RS05735	0.73	+0.7
1,282,171	-		DDA3937_RS05735	0.73	-2.1
1,282,188	+		DDA3937_RS05735	0.74	-2.8
1,282,188	+		DDA3937_RS05735	0.74	+2.5
1,282,188	+		DDA3937_RS05735	0.74	+1.4
1,282,189	-				-0.1
1,282,222	+		DDA3937_RS05735	0.75	-1.2
1,282,222	+		DDA3937_RS05735	0.75	-1.8
1,282,223	-		DDA3937_RS05735	0.75	-3.6
1,282,223	-		DDA3937_RS05735	0.75	-2.3
1,282,403	+		DDA3937_RS05735	0.81	-0.3
1,282,403	+		DDA3937_RS05735	0.81	-2.8
1,282,403	+		DDA3937_RS05735	0.81	-0.0
1,282,403	+		DDA3937_RS05735	0.81	-4.0
1,282,404	-		DDA3937_RS05735	0.81	+2.0
1,282,404	-		DDA3937_RS05735	0.81	-2.2
1,282,404	-		DDA3937_RS05735	0.81	-2.6
1,282,415	-		DDA3937_RS05735	0.81	-2.9
1,282,415	-		DDA3937_RS05735	0.81	-1.8
1,282,415	-		DDA3937_RS05735	0.81	+0.5
1,282,425	+		DDA3937_RS05735	0.81	-0.4
1,282,425	+		DDA3937_RS05735	0.81	+2.3
1,282,425	+		DDA3937_RS05735	0.81	-1.5
1,282,426	-		DDA3937_RS05735	0.81	+2.7
1,282,426	-		DDA3937_RS05735	0.81	+1.7
1,282,426	-		DDA3937_RS05735	0.81	-2.9
1,282,456	+		DDA3937_RS05735	0.82	+0.5
1,282,456	+		DDA3937_RS05735	0.82	-2.0
1,282,456	+		DDA3937_RS05735	0.82	-2.0
1,282,457	-		DDA3937_RS05735	0.82	-2.0
1,282,457	-		DDA3937_RS05735	0.82	-3.2
1,282,457	-		DDA3937_RS05735	0.82	-1.3
1,282,468	-		DDA3937_RS05735	0.83	-0.1
1,282,574	-		DDA3937_RS05735	0.86	-2.4
1,282,609	+		DDA3937_RS05735	0.87	-2.7
1,282,609	+		DDA3937_RS05735	0.87	-4.0
1,282,692	-		DDA3937_RS05735	0.90	+1.0
1,282,692	-		DDA3937_RS05735	0.90	-0.3
1,282,754	-				-2.1
1,282,780	+				+0.4
1,282,780	+				-2.4
1,282,780	+				-1.1
1,282,780	+				+2.4
1,282,780	+				-1.1
1,282,780	+				-1.3
1,282,780	+				-2.0
1,282,780	+				-2.6
1,282,780	+				-2.1
1,282,780	+				-2.5
1,282,780	+				+1.5
1,282,780	+				-2.0
1,282,781	-				-0.1
1,282,781	-				-2.4
1,282,781	-				-3.2
1,282,781	-				-2.4
1,282,781	-				+1.0
1,282,781	-				+2.8
1,282,781	-				-0.3
1,282,781	-				+0.3
1,282,781	-				-0.4
1,282,781	-				-0.1
1,282,781	-				-3.0
1,282,781	-				+0.6
1,282,782	+				-2.0
1,282,782	+				+0.0
1,282,782	+				-1.7
1,282,782	+				-1.7
1,282,782	+				-3.0
1,282,782	+				+0.3
1,282,782	+				-1.3
1,282,783	-				-3.0
1,282,783	-				+0.4
1,282,783	-				-0.1
1,282,783	-				-0.5
1,282,783	-				+0.4
1,282,783	-				+1.8
1,282,783	-				-2.8
1,282,783	-				+1.0
1,282,783	-				-2.6
1,282,783	-				+0.5
1,282,787	+				-2.0
1,282,787	+				-1.5
1,282,787	+				+0.2
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