Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05660

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,264,142	-				+3.5
1,264,142	-				+4.3
1,264,185	+				-2.9
1,264,219	-				+0.9
1,264,223	-				+0.7
1,264,312	+				-2.7
1,264,312	+				+1.5
1,264,318	+				-1.5
1,264,318	+				+0.7
1,264,318	+				-0.8
1,264,319	-				-0.5
1,264,345	-				-0.3
1,264,348	-				-1.0
1,264,348	-				+1.3
1,264,348	-				-2.0
1,264,353	+				+2.6
1,264,353	+				+0.7
1,264,419	-		DDA3937_RS05655	0.16	-1.7
1,264,458	-		DDA3937_RS05655	0.31	-0.5
1,264,469	+		DDA3937_RS05655	0.35	+0.9
1,264,470	-		DDA3937_RS05655	0.35	-0.8
1,264,505	-		DDA3937_RS05655	0.48	+1.0
1,264,517	+		DDA3937_RS05655	0.52	+0.4
1,264,517	+		DDA3937_RS05655	0.52	+3.2
1,264,518	-		DDA3937_RS05655	0.53	-2.4
1,264,556	+		DDA3937_RS05655	0.67	+0.9
1,264,556	+		DDA3937_RS05655	0.67	+0.1
1,264,584	-		DDA3937_RS05655	0.77	+0.4
1,264,650	+				-2.1
1,264,650	+				+0.4
1,264,651	-				-2.0
1,264,651	-				-0.2
1,264,651	-				+1.1
1,264,652	+				-2.9
1,264,652	+				+1.2
1,264,652	+				+0.6
1,264,652	+				+1.0
1,264,652	+				-1.7
1,264,652	+				+0.8
1,264,652	+				+0.8
1,264,652	+				+1.0
1,264,653	-				+2.0
1,264,653	-				-1.5
1,264,653	-				-2.3
1,264,653	-				+0.6
1,264,653	-				-2.5
1,264,653	-				+1.6
1,264,653	-				-1.7
1,264,653	-				+0.5
1,264,653	-				-2.3
1,264,653	-				-2.2
1,264,697	+				+1.1
1,264,698	-				-0.1
1,264,724	-				-1.3
1,264,724	-				-1.3
1,264,728	+				+0.6
1,264,728	+				-2.6
1,264,728	+				+1.9
1,264,728	+				+2.7
1,264,728	+				-1.1
1,264,729	-				-3.0
1,264,729	-				-1.1
1,264,729	-				+0.5
1,264,729	-				-2.0
1,264,729	-				-1.9
1,264,730	+				+1.2
1,264,730	+				+0.5
1,264,730	+				-2.7
1,264,731	-				-3.7
1,264,731	-				-0.5
1,264,731	-				-1.7
1,264,731	-				-2.2
1,264,745	+				+1.4
1,264,745	+				+0.9
1,264,773	-				+0.5
1,264,778	+				-0.5
1,264,778	+				-0.8
1,264,778	+				-3.4
1,264,778	+				+0.8
1,264,779	-				-0.4
1,264,785	-				-2.3
1,264,824	+				+1.5
1,264,826	+				-3.7
1,264,826	+				-1.8
1,264,826	+				+1.0
1,264,826	+				-3.2
1,264,826	+				-0.4
1,264,832	+				-1.9
1,264,832	+				-0.9
1,264,882	-				-0.6
1,264,902	+				-2.8
1,264,902	+				-0.3
1,264,902	+				-2.6
1,264,902	+				+0.7
1,264,902	+				-1.7
1,264,903	-				-2.0
1,264,903	-				-1.3
1,264,903	-				-0.3
1,265,000	-				-2.5
1,265,006	+				+0.9
1,265,006	+				-1.3
1,265,006	+				+0.7
1,265,007	-				-1.9
1,265,007	-				-1.5
1,265,149	+		DDA3937_RS05660	0.13	-0.1
1,265,149	+		DDA3937_RS05660	0.13	-1.7
1,265,149	+		DDA3937_RS05660	0.13	-2.0
1,265,149	+				-0.1
1,265,150	-		DDA3937_RS05660	0.13	-1.3
1,265,150	-		DDA3937_RS05660	0.13	-2.5
1,265,151	+		DDA3937_RS05660	0.13	+0.6
1,265,151	+		DDA3937_RS05660	0.13	-0.9
1,265,151	+		DDA3937_RS05660	0.13	-2.3
1,265,151	+		DDA3937_RS05660	0.13	-0.5
1,265,152	-		DDA3937_RS05660	0.13	-1.1
1,265,152	-		DDA3937_RS05660	0.13	-2.3
1,265,152	-		DDA3937_RS05660	0.13	-0.9
1,265,152	-		DDA3937_RS05660	0.13	+0.8
1,265,152	-		DDA3937_RS05660	0.13	-0.1
1,265,212	+		DDA3937_RS05660	0.16	-3.2
1,265,213	-		DDA3937_RS05660	0.16	-1.5
1,265,213	-		DDA3937_RS05660	0.16	-1.1
1,265,213	-		DDA3937_RS05660	0.16	-1.5
1,265,310	+		DDA3937_RS05660	0.22	+2.1
1,265,310	+		DDA3937_RS05660	0.22	-1.3
1,265,310	+		DDA3937_RS05660	0.22	-1.7
1,265,310	+		DDA3937_RS05660	0.22	-0.5
1,265,310	+		DDA3937_RS05660	0.22	-2.2
1,265,310	+		DDA3937_RS05660	0.22	-2.2
1,265,310	+		DDA3937_RS05660	0.22	-2.1
1,265,310	+		DDA3937_RS05660	0.22	+1.8
1,265,311	-		DDA3937_RS05660	0.22	-3.7
1,265,311	-		DDA3937_RS05660	0.22	+0.8
1,265,311	-		DDA3937_RS05660	0.22	+0.1
1,265,314	+		DDA3937_RS05660	0.22	-2.3
1,265,314	+		DDA3937_RS05660	0.22	+1.8
1,265,315	-		DDA3937_RS05660	0.22	-2.0
1,265,381	+		DDA3937_RS05660	0.25	-2.1
1,265,381	+		DDA3937_RS05660	0.25	-2.6
1,265,381	+		DDA3937_RS05660	0.25	-0.8
1,265,381	+		DDA3937_RS05660	0.25	-2.0
1,265,381	+		DDA3937_RS05660	0.25	-3.6
1,265,605	+		DDA3937_RS05660	0.37	-2.2
1,265,605	+		DDA3937_RS05660	0.37	-1.2
1,265,605	+		DDA3937_RS05660	0.37	+1.2
1,265,605	+		DDA3937_RS05660	0.37	-1.1
1,265,605	+		DDA3937_RS05660	0.37	-2.7
1,265,605	+		DDA3937_RS05660	0.37	-2.9
1,265,605	+				-0.1
1,265,605	+		DDA3937_RS05660	0.37	-1.9
1,265,606	-		DDA3937_RS05660	0.37	-1.0
1,265,606	-		DDA3937_RS05660	0.37	-3.6
1,265,606	-		DDA3937_RS05660	0.37	-0.9
1,265,606	-		DDA3937_RS05660	0.37	-0.5
1,265,606	-		DDA3937_RS05660	0.37	-2.9
1,265,606	-		DDA3937_RS05660	0.37	-3.2
1,265,607	+		DDA3937_RS05660	0.37	-1.3
1,265,607	+		DDA3937_RS05660	0.37	-1.5
1,265,607	+		DDA3937_RS05660	0.37	-1.5
1,265,607	+		DDA3937_RS05660	0.37	+1.1
1,265,608	-		DDA3937_RS05660	0.37	+1.5
1,265,608	-		DDA3937_RS05660	0.37	+1.2
1,265,608	-		DDA3937_RS05660	0.37	-2.3
1,265,608	-		DDA3937_RS05660	0.37	-2.0
1,265,671	+		DDA3937_RS05660	0.41	-0.6
1,265,675	-		DDA3937_RS05660	0.41	-1.4
1,265,675	-		DDA3937_RS05660	0.41	+0.6
1,265,685	+		DDA3937_RS05660	0.42	-0.5
1,265,685	+		DDA3937_RS05660	0.42	+1.1
1,265,685	+		DDA3937_RS05660	0.42	-2.1
1,265,719	+		DDA3937_RS05660	0.43	-2.8
1,265,719	+		DDA3937_RS05660	0.43	-2.4
1,265,945	+		DDA3937_RS05660	0.55	-0.3
1,265,950	+		DDA3937_RS05660	0.56	-2.1
1,265,950	+		DDA3937_RS05660	0.56	-1.1
1,266,061	+		DDA3937_RS05660	0.62	-0.5
1,266,061	+		DDA3937_RS05660	0.62	-1.5
1,266,062	-		DDA3937_RS05660	0.62	-1.1
1,266,062	-		DDA3937_RS05660	0.62	-2.5
1,266,302	+		DDA3937_RS05660	0.74	-0.9
1,266,303	-		DDA3937_RS05660	0.74	-1.3
1,266,755	-				+1.4
1,266,781	+				-1.7
1,266,781	+				+0.0
1,266,782	-				-0.3
1,266,947	+				-0.5
1,266,947	+				-0.5
1,266,948	-				+0.7
1,266,948	-				-0.6
1,266,948	-				+0.6
1,267,114	-		DDA3937_RS05665	0.51	+1.3
1,267,116	+		DDA3937_RS05665	0.52	-0.7
1,267,116	+		DDA3937_RS05665	0.52	-1.3
1,267,116	+		DDA3937_RS05665	0.52	-1.7
1,267,116	+		DDA3937_RS05665	0.52	+0.3
1,267,117	-		DDA3937_RS05665	0.52	-2.7
1,267,117	-				+1.8
1,267,117	-		DDA3937_RS05665	0.52	-2.5
1,267,117	-		DDA3937_RS05665	0.52	+1.1
1,267,184	+		DDA3937_RS05665	0.70	-2.8
1,267,185	-		DDA3937_RS05665	0.70	-4.3
1,267,185	-		DDA3937_RS05665	0.70	-3.0
1,267,192	+		DDA3937_RS05665	0.72	+1.9
1,267,192	+		DDA3937_RS05665	0.72	+1.5
1,267,192	+		DDA3937_RS05665	0.72	-1.7
1,267,193	-		DDA3937_RS05665	0.72	+2.1
1,267,193	-		DDA3937_RS05665	0.72	-3.6
1,267,216	-		DDA3937_RS05665	0.78	-3.1
1,267,272	+				-1.5
1,267,294	+				-1.1
1,267,295	-				+2.5
1,267,406	-				-0.3
1,267,461	-				-2.0
1,267,461	-				-2.5
1,267,469	-				-1.5
1,267,529	+		DDA3937_RS05670	0.17	-0.8
1,267,541	-		DDA3937_RS05670	0.19	-1.8
1,267,541	-		DDA3937_RS05670	0.19	-2.7
1,267,582	+		DDA3937_RS05670	0.25	-0.3
1,267,583	-		DDA3937_RS05670	0.25	-1.3
1,267,585	+		DDA3937_RS05670	0.25	-0.3
1,267,778	-				-1.3