Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05125

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS05120 and DDA3937_RS05125 are separated by 171 nucleotidesDDA3937_RS05125 and DDA3937_RS05130 are separated by 142 nucleotidesDDA3937_RS05130 and DDA3937_RS05135 are separated by 199 nucleotides DDA3937_RS05120: DDA3937_RS05120 - elongation factor Ts, at 1,142,861 to 1,143,718 _RS05120 DDA3937_RS05125: DDA3937_RS05125 - UMP kinase, at 1,143,890 to 1,144,621 _RS05125 DDA3937_RS05130: DDA3937_RS05130 - ribosome recycling factor, at 1,144,764 to 1,145,321 _RS05130 DDA3937_RS05135: DDA3937_RS05135 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 1,145,521 to 1,146,714 _RS05135 Position (kb) 1143 1144 1145Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1143.765 kb on + strandat 1143.765 kb on + strandat 1143.780 kb on + strandat 1143.780 kb on + strandat 1143.780 kb on + strandat 1144.612 kb on + strandat 1144.626 kb on + strandat 1144.626 kb on + strandat 1144.636 kb on + strandat 1144.636 kb on + strandat 1144.636 kb on + strandat 1144.639 kb on + strandat 1144.639 kb on + strandat 1144.639 kb on + strandat 1144.670 kb on + strandat 1144.670 kb on + strandat 1144.670 kb on + strandat 1144.670 kb on + strandat 1144.670 kb on + strandat 1144.670 kb on + strandat 1144.670 kb on + strandat 1144.670 kb on + strandat 1144.670 kb on + strandat 1144.672 kb on + strandat 1144.692 kb on + strandat 1144.692 kb on + strandat 1144.692 kb on + strandat 1145.506 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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1,143,765 + -1.7
1,143,765 + -2.5
1,143,780 + -2.8
1,143,780 + +3.2
1,143,780 + -0.1
1,144,612 + -0.9
1,144,626 + +2.0
1,144,626 + -0.1
1,144,636 + -3.4
1,144,636 + -2.0
1,144,636 + +0.8
1,144,639 + +2.0
1,144,639 + +0.5
1,144,639 + -0.5
1,144,670 + -1.7
1,144,670 + -0.8
1,144,670 + -3.0
1,144,670 + -2.5
1,144,670 + +1.2
1,144,670 + -3.6
1,144,670 + +2.2
1,144,670 + +1.7
1,144,670 + -3.0
1,144,672 + +2.0
1,144,692 + -1.1
1,144,692 + +2.0
1,144,692 + +1.8
1,145,506 + -0.2

Or see this region's nucleotide sequence