Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS05120 and DDA3937_RS05125 are separated by 171 nucleotides DDA3937_RS05125 and DDA3937_RS05130 are separated by 142 nucleotides DDA3937_RS05130 and DDA3937_RS05135 are separated by 199 nucleotides
DDA3937_RS05120: DDA3937_RS05120 - elongation factor Ts, at 1,142,861 to 1,143,718
_RS05120
DDA3937_RS05125: DDA3937_RS05125 - UMP kinase, at 1,143,890 to 1,144,621
_RS05125
DDA3937_RS05130: DDA3937_RS05130 - ribosome recycling factor, at 1,144,764 to 1,145,321
_RS05130
DDA3937_RS05135: DDA3937_RS05135 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 1,145,521 to 1,146,714
_RS05135
Position (kb)
1143
1144
1145 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1143.765 kb on + strand at 1143.765 kb on + strand at 1143.780 kb on + strand at 1143.780 kb on + strand at 1143.780 kb on + strand at 1144.612 kb on + strand at 1144.626 kb on + strand at 1144.626 kb on + strand at 1144.636 kb on + strand at 1144.636 kb on + strand at 1144.636 kb on + strand at 1144.639 kb on + strand at 1144.639 kb on + strand at 1144.639 kb on + strand at 1144.670 kb on + strand at 1144.670 kb on + strand at 1144.670 kb on + strand at 1144.670 kb on + strand at 1144.670 kb on + strand at 1144.670 kb on + strand at 1144.670 kb on + strand at 1144.670 kb on + strand at 1144.670 kb on + strand at 1144.672 kb on + strand at 1144.692 kb on + strand at 1144.692 kb on + strand at 1144.692 kb on + strand at 1145.506 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 1,143,765 + -1.7 1,143,765 + -2.5 1,143,780 + -2.8 1,143,780 + +3.2 1,143,780 + -0.1 1,144,612 + -0.9 1,144,626 + +2.0 1,144,626 + -0.1 1,144,636 + -3.4 1,144,636 + -2.0 1,144,636 + +0.8 1,144,639 + +2.0 1,144,639 + +0.5 1,144,639 + -0.5 1,144,670 + -1.7 1,144,670 + -0.8 1,144,670 + -3.0 1,144,670 + -2.5 1,144,670 + +1.2 1,144,670 + -3.6 1,144,670 + +2.2 1,144,670 + +1.7 1,144,670 + -3.0 1,144,672 + +2.0 1,144,692 + -1.1 1,144,692 + +2.0 1,144,692 + +1.8 1,145,506 + -0.2
Or see this region's nucleotide sequence