Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05070

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,131,274	+				-3.2
1,131,275	-				-0.4
1,131,275	-				-2.0
1,131,331	+				-2.7
1,131,332	-				-1.8
1,131,356	-				+3.3
1,131,385	+				+1.8
1,131,386	-				+2.9
1,131,386	-				+0.9
1,131,410	-				+1.5
1,131,515	+		DDA3937_RS05065	0.20	+1.0
1,131,518	-		DDA3937_RS05065	0.20	-1.1
1,131,547	+		DDA3937_RS05065	0.24	-0.7
1,131,698	+		DDA3937_RS05065	0.44	-1.8
1,131,699	-		DDA3937_RS05065	0.44	-1.5
1,131,727	+		DDA3937_RS05065	0.48	-0.5
1,131,727	+		DDA3937_RS05065	0.48	-0.6
1,131,738	-		DDA3937_RS05065	0.49	-2.6
1,131,929	+		DDA3937_RS05065	0.74	+0.1
1,131,929	+		DDA3937_RS05065	0.74	+1.8
1,131,929	+		DDA3937_RS05065	0.74	-1.3
1,131,930	-		DDA3937_RS05065	0.74	+0.2
1,131,930	-		DDA3937_RS05065	0.74	+1.4
1,132,066	+				-3.6
1,132,067	-				-0.6
1,132,107	+				+2.9
1,132,107	+				+1.0
1,132,108	-				+2.5
1,132,117	+				-0.4
1,132,117	+				+1.0
1,132,117	+				+1.4
1,132,117	+				+0.6
1,132,117	+				-3.1
1,132,118	-				-0.4
1,132,118	-				-1.3
1,132,118	-				+0.8
1,132,118	-				-1.3
1,132,126	-				-1.3
1,132,133	-				+0.4
1,132,156	+				-0.2
1,132,157	-				-1.4
1,132,195	+				-2.0
1,132,207	+				-2.0
1,132,208	-				-1.3
1,132,229	+				-1.4
1,132,230	-				-2.6
1,132,289	+				-1.7
1,132,289	+				-0.8
1,132,304	-				-2.2
1,132,356	+		DDA3937_RS05070	0.13	+0.9
1,132,356	+				+0.5
1,132,356	+		DDA3937_RS05070	0.13	+0.8
1,132,357	-		DDA3937_RS05070	0.13	-0.7
1,132,357	-		DDA3937_RS05070	0.13	+0.9
1,132,357	-		DDA3937_RS05070	0.13	+0.1
1,132,357	-		DDA3937_RS05070	0.13	-3.5
1,132,504	+		DDA3937_RS05070	0.24	+1.8
1,132,504	+		DDA3937_RS05070	0.24	-1.3
1,132,504	+		DDA3937_RS05070	0.24	-2.5
1,132,505	-		DDA3937_RS05070	0.24	-2.6
1,132,505	-		DDA3937_RS05070	0.24	+1.1
1,132,505	-		DDA3937_RS05070	0.24	-1.6
1,132,505	-		DDA3937_RS05070	0.24	+1.7
1,132,518	-		DDA3937_RS05070	0.25	-0.2
1,132,600	+		DDA3937_RS05070	0.31	-3.2
1,132,601	-		DDA3937_RS05070	0.31	+0.3
1,132,601	-		DDA3937_RS05070	0.31	-3.2
1,132,603	+		DDA3937_RS05070	0.31	-2.4
1,132,604	-		DDA3937_RS05070	0.31	-2.0
1,132,660	+		DDA3937_RS05070	0.35	+1.5
1,132,661	-		DDA3937_RS05070	0.35	-2.1
1,132,661	-		DDA3937_RS05070	0.35	-2.1
1,132,661	-		DDA3937_RS05070	0.35	-0.5
1,132,661	-		DDA3937_RS05070	0.35	-2.8
1,132,691	+		DDA3937_RS05070	0.38	+0.2
1,132,691	+		DDA3937_RS05070	0.38	-0.7
1,132,692	-		DDA3937_RS05070	0.38	+0.1
1,132,744	+		DDA3937_RS05070	0.41	+1.1
1,132,744	+		DDA3937_RS05070	0.41	+1.6
1,132,745	-		DDA3937_RS05070	0.41	+0.5
1,132,745	-		DDA3937_RS05070	0.41	-2.0
1,132,745	-		DDA3937_RS05070	0.41	+0.4
1,132,784	+		DDA3937_RS05070	0.44	-4.3
1,132,785	-		DDA3937_RS05070	0.44	-4.4
1,132,785	-		DDA3937_RS05070	0.44	-1.1
1,132,785	-		DDA3937_RS05070	0.44	-2.3
1,132,785	-		DDA3937_RS05070	0.44	-0.5
1,132,785	-		DDA3937_RS05070	0.44	-1.2
1,132,785	-		DDA3937_RS05070	0.44	+0.7
1,132,785	-		DDA3937_RS05070	0.44	-0.3
1,132,845	-		DDA3937_RS05070	0.49	-0.5
1,132,998	-		DDA3937_RS05070	0.60	-2.4
1,133,017	-		DDA3937_RS05070	0.61	-3.1
1,133,017	-		DDA3937_RS05070	0.61	-0.8
1,133,047	+		DDA3937_RS05070	0.64	-0.7
1,133,048	-		DDA3937_RS05070	0.64	-0.8
1,133,054	-		DDA3937_RS05070	0.64	-2.1
1,133,156	+		DDA3937_RS05070	0.72	-1.1
1,133,157	-		DDA3937_RS05070	0.72	-0.8
1,133,157	-		DDA3937_RS05070	0.72	+1.0
1,133,157	-		DDA3937_RS05070	0.72	-2.8
1,133,234	+		DDA3937_RS05070	0.77	-2.0
1,133,234	+		DDA3937_RS05070	0.77	-2.2
1,133,234	+		DDA3937_RS05070	0.77	-2.4
1,133,234	+		DDA3937_RS05070	0.77	+1.1
1,133,277	-		DDA3937_RS05070	0.80	+1.3
1,133,347	-		DDA3937_RS05070	0.86	-2.1
1,133,347	-		DDA3937_RS05070	0.86	+0.7
1,133,483	+				-1.2
1,133,484	-				-0.8
1,133,521	-				-2.3
1,133,531	+				-0.5
1,133,531	+				-0.1
1,133,531	+				-0.6
1,133,531	+				+1.1
1,133,531	+				+0.1
1,133,532	-				-2.0
1,133,532	-				+0.3
1,133,532	-				-0.3
1,133,532	-				-1.8
1,133,543	+				-2.1
1,133,543	+				+2.1
1,133,543	+				-1.1
1,133,543	+				-2.2
1,133,543	+				-1.2
1,133,543	+				-0.4
1,133,543	+				-0.1
1,133,543	+				-0.8
1,133,544	-				-3.6
1,133,544	-				-0.8
1,133,544	-				+1.8
1,133,544	-				+2.9
1,133,544	-				-3.4
1,133,544	-				+1.7
1,133,544	-				-1.5
1,133,544	-				-3.2
1,133,546	+				+0.3
1,133,546	+				-1.0
1,133,546	+				+0.5
1,133,546	+				-1.6
1,133,546	+				-0.5
1,133,546	+				-1.6
1,133,546	+				-2.6
1,133,546	+				+2.3
1,133,547	-				-1.3
1,133,547	-				-2.4
1,133,547	-				+1.9
1,133,547	-				+1.2
1,133,547	-				-3.2
1,133,607	+				-0.8
1,133,607	+				-0.7
1,133,607	+				+1.5
1,133,607	+				-0.6
1,133,608	-				-2.8
1,133,624	+				-2.0
1,133,624	+				-1.3
1,133,624	+				+2.8
1,133,625	-				-3.2
1,133,625	-				-1.3
1,133,625	-				-0.8
1,133,660	-				-0.6
1,133,660	-				-3.2
1,133,681	-				-1.1
1,133,759	-				+2.0
1,133,759	-				-2.8
1,133,759	-				+1.0
1,133,759	-				+2.7
1,133,767	+				-2.0
1,133,767	+				-1.8
1,133,768	-				-2.7
1,133,802	+				-0.3
1,133,802	+				-2.7
1,133,802	+				+1.9
1,133,802	+				+0.1
1,133,802	+				+0.4
1,133,803	-				+0.2
1,133,820	-				+0.4
1,133,852	-				+3.1
1,133,852	-				-1.6
1,133,852	-				-0.9
1,133,852	-				-0.1
1,133,852	-				-2.2
1,133,862	-		DDA3937_RS05075	0.10	-2.2
1,133,905	+		DDA3937_RS05075	0.18	+0.2
1,133,905	+		DDA3937_RS05075	0.18	-1.4
1,133,905	+		DDA3937_RS05075	0.18	-0.1
1,133,905	+		DDA3937_RS05075	0.18	+0.2
1,133,905	+		DDA3937_RS05075	0.18	+1.3
1,133,905	+		DDA3937_RS05075	0.18	+0.0
1,133,906	-		DDA3937_RS05075	0.18	+1.5
1,133,906	-		DDA3937_RS05075	0.18	-2.2
1,133,906	-		DDA3937_RS05075	0.18	-0.5
1,133,906	-		DDA3937_RS05075	0.18	+1.9
1,133,926	-		DDA3937_RS05075	0.22	-2.7
1,134,132	+		DDA3937_RS05075	0.59	-0.2
1,134,195	+		DDA3937_RS05075	0.71	-2.7
1,134,195	+		DDA3937_RS05075	0.71	-2.6
1,134,195	+		DDA3937_RS05075	0.71	-2.5
1,134,195	+		DDA3937_RS05075	0.71	-3.6
1,134,195	+		DDA3937_RS05075	0.71	-0.6
1,134,195	+		DDA3937_RS05075	0.71	+0.3
1,134,195	+		DDA3937_RS05075	0.71	-1.5
1,134,196	-		DDA3937_RS05075	0.71	+3.5
1,134,196	-		DDA3937_RS05075	0.71	+0.8
1,134,196	-		DDA3937_RS05075	0.71	-1.5
1,134,196	-		DDA3937_RS05075	0.71	-1.3
1,134,196	-		DDA3937_RS05075	0.71	+0.3
1,134,196	-		DDA3937_RS05075	0.71	+3.0
1,134,201	-		DDA3937_RS05075	0.72	-2.0
1,134,201	-				-0.8
1,134,234	-		DDA3937_RS05075	0.78	-0.5
1,134,282	+		DDA3937_RS05075	0.87	-2.0
1,134,396	+				+1.6
1,134,420	-				-2.2
1,134,429	-				+2.9