Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04985

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,115,018	+				-1.3
1,115,019	-				+2.2
1,115,040	+				+1.0
1,115,040	+				+0.2
1,115,040	+				+2.2
1,115,040	+				+2.1
1,115,040	+				+0.6
1,115,041	-				+1.0
1,115,041	-				-1.5
1,115,041	-				-0.7
1,115,041	-				+0.5
1,115,041	-				-0.8
1,115,041	-				-0.8
1,115,041	-				-2.3
1,115,070	-				-1.8
1,115,070	-				-0.3
1,115,070	-				+2.0
1,115,079	-				+0.2
1,115,108	+				-1.3
1,115,108	+				+1.3
1,115,108	+				-0.7
1,115,279	+		DDA3937_RS04975	0.48	-1.3
1,115,295	+		DDA3937_RS04975	0.52	-3.6
1,115,295	+		DDA3937_RS04975	0.52	-1.1
1,115,295	+		DDA3937_RS04975	0.52	+0.1
1,115,296	-		DDA3937_RS04975	0.53	-1.6
1,115,349	+		DDA3937_RS04975	0.66	+2.2
1,115,371	+		DDA3937_RS04975	0.71	+2.5
1,115,372	-		DDA3937_RS04975	0.71	-0.5
1,115,388	-		DDA3937_RS04975	0.75	+1.0
1,115,582	+		DDA3937_RS04980	0.32	-1.3
1,115,582	+		DDA3937_RS04980	0.32	+0.5
1,115,583	-		DDA3937_RS04980	0.32	+1.2
1,115,592	+		DDA3937_RS04980	0.34	-0.6
1,115,592	+		DDA3937_RS04980	0.34	-2.2
1,115,592	+		DDA3937_RS04980	0.34	+1.2
1,115,593	-		DDA3937_RS04980	0.35	-1.1
1,115,838	+				-3.2
1,115,838	+				+2.0
1,115,866	-				-0.8
1,115,875	+				-1.7
1,115,875	+				+5.4
1,115,875	+				+3.5
1,115,875	+				+0.1
1,115,876	-				-0.8
1,115,876	-				-0.4
1,115,876	-				-0.0
1,115,911	+				-0.5
1,115,912	-				+0.7
1,116,050	-				-3.0
1,116,060	+				-1.3
1,116,060	+				+1.4
1,116,060	+				-1.1
1,116,060	+				-0.5
1,116,060	+				+2.1
1,116,061	-				+0.3
1,116,282	-		DDA3937_RS04985	0.13	-0.3
1,116,402	+		DDA3937_RS04985	0.17	-3.2
1,116,402	+		DDA3937_RS04985	0.17	+3.0
1,116,402	+		DDA3937_RS04985	0.17	-4.6
1,116,402	+		DDA3937_RS04985	0.17	-1.3
1,116,403	-		DDA3937_RS04985	0.17	+1.6
1,116,403	-		DDA3937_RS04985	0.17	+0.1
1,116,406	+		DDA3937_RS04985	0.17	+1.4
1,116,406	+		DDA3937_RS04985	0.17	-3.0
1,116,406	+		DDA3937_RS04985	0.17	-1.5
1,116,406	+		DDA3937_RS04985	0.17	-4.6
1,116,406	+		DDA3937_RS04985	0.17	-2.7
1,116,406	+		DDA3937_RS04985	0.17	-0.5
1,116,406	+		DDA3937_RS04985	0.17	-3.0
1,116,406	+		DDA3937_RS04985	0.17	-2.3
1,116,406	+		DDA3937_RS04985	0.17	-1.5
1,116,407	-		DDA3937_RS04985	0.18	-2.3
1,116,407	-		DDA3937_RS04985	0.18	+1.0
1,116,407	-		DDA3937_RS04985	0.18	-0.8
1,116,407	-		DDA3937_RS04985	0.18	-2.1
1,116,461	-		DDA3937_RS04985	0.19	-1.5
1,116,529	+		DDA3937_RS04985	0.22	-2.2
1,116,530	-		DDA3937_RS04985	0.22	+0.9
1,116,566	+		DDA3937_RS04985	0.23	-1.4
1,116,566	+		DDA3937_RS04985	0.23	-2.3
1,116,567	-		DDA3937_RS04985	0.23	+2.1
1,116,567	-		DDA3937_RS04985	0.23	+1.0
1,116,567	-		DDA3937_RS04985	0.23	-0.2
1,116,567	-		DDA3937_RS04985	0.23	+0.3
1,116,599	+		DDA3937_RS04985	0.24	+1.0
1,116,699	+		DDA3937_RS04985	0.28	-2.2
1,116,734	+		DDA3937_RS04985	0.29	+0.7
1,116,734	+		DDA3937_RS04985	0.29	+0.3
1,116,734	+		DDA3937_RS04985	0.29	-3.5
1,116,735	-		DDA3937_RS04985	0.29	-3.6
1,116,735	-		DDA3937_RS04985	0.29	+0.2
1,116,735	-		DDA3937_RS04985	0.29	+1.2
1,116,771	-		DDA3937_RS04985	0.30	-3.3
1,116,785	-		DDA3937_RS04985	0.31	+0.4
1,116,785	-		DDA3937_RS04985	0.31	-0.5
1,116,821	+		DDA3937_RS04985	0.32	+0.9
1,116,821	+		DDA3937_RS04985	0.32	+0.3
1,116,821	+		DDA3937_RS04985	0.32	+1.5
1,116,821	+		DDA3937_RS04985	0.32	-1.5
1,116,821	+		DDA3937_RS04985	0.32	-1.6
1,116,821	+		DDA3937_RS04985	0.32	-1.0
1,116,821	+		DDA3937_RS04985	0.32	+0.4
1,116,821	+		DDA3937_RS04985	0.32	-0.3
1,116,821	+		DDA3937_RS04985	0.32	+0.6
1,116,821	+		DDA3937_RS04985	0.32	-2.1
1,116,821	+		DDA3937_RS04985	0.32	-0.1
1,116,822	-		DDA3937_RS04985	0.32	-2.5
1,116,822	-		DDA3937_RS04985	0.32	+0.7
1,116,822	-		DDA3937_RS04985	0.32	+1.0
1,116,822	-		DDA3937_RS04985	0.32	-0.4
1,116,822	-		DDA3937_RS04985	0.32	-1.5
1,116,822	-				+0.5
1,116,822	-		DDA3937_RS04985	0.32	-1.3
1,116,822	-		DDA3937_RS04985	0.32	-1.6
1,116,822	-		DDA3937_RS04985	0.32	+0.9
1,116,830	+		DDA3937_RS04985	0.32	+2.3
1,116,830	+		DDA3937_RS04985	0.32	+1.4
1,116,831	-		DDA3937_RS04985	0.32	-1.1
1,116,831	-		DDA3937_RS04985	0.32	-3.1
1,116,900	+		DDA3937_RS04985	0.34	+0.3
1,116,900	+		DDA3937_RS04985	0.34	-1.1
1,116,942	+				+0.5
1,116,942	+		DDA3937_RS04985	0.36	-2.5
1,116,943	-		DDA3937_RS04985	0.36	-2.5
1,116,949	+		DDA3937_RS04985	0.36	-2.0
1,116,950	-		DDA3937_RS04985	0.36	-1.7
1,117,108	+		DDA3937_RS04985	0.42	+0.9
1,117,124	+		DDA3937_RS04985	0.42	+1.7
1,117,124	+		DDA3937_RS04985	0.42	-3.0
1,117,124	+		DDA3937_RS04985	0.42	+0.0
1,117,124	+		DDA3937_RS04985	0.42	+0.2
1,117,124	+		DDA3937_RS04985	0.42	+0.9
1,117,124	+		DDA3937_RS04985	0.42	+1.6
1,117,124	+		DDA3937_RS04985	0.42	+0.6
1,117,124	+		DDA3937_RS04985	0.42	+0.1
1,117,124	+		DDA3937_RS04985	0.42	-1.0
1,117,125	-		DDA3937_RS04985	0.42	-2.6
1,117,125	-		DDA3937_RS04985	0.42	-2.2
1,117,125	-		DDA3937_RS04985	0.42	-1.3
1,117,125	-		DDA3937_RS04985	0.42	+1.7
1,117,125	-		DDA3937_RS04985	0.42	-0.1
1,117,125	-		DDA3937_RS04985	0.42	-2.1
1,117,125	-		DDA3937_RS04985	0.42	-1.3
1,117,125	-		DDA3937_RS04985	0.42	+0.7
1,117,125	-		DDA3937_RS04985	0.42	+2.0
1,117,125	-		DDA3937_RS04985	0.42	-2.5
1,117,169	+		DDA3937_RS04985	0.44	+1.1
1,117,169	+		DDA3937_RS04985	0.44	-2.3
1,117,169	+		DDA3937_RS04985	0.44	-0.5
1,117,170	-		DDA3937_RS04985	0.44	-2.5
1,117,171	+		DDA3937_RS04985	0.44	+1.9
1,117,171	+		DDA3937_RS04985	0.44	-2.3
1,117,171	+		DDA3937_RS04985	0.44	+0.3
1,117,171	+		DDA3937_RS04985	0.44	+3.6
1,117,171	+		DDA3937_RS04985	0.44	-2.1
1,117,172	-		DDA3937_RS04985	0.44	-1.1
1,117,187	+		DDA3937_RS04985	0.44	-1.2
1,117,291	+		DDA3937_RS04985	0.48	+1.0
1,117,292	-		DDA3937_RS04985	0.48	-1.5
1,117,292	-		DDA3937_RS04985	0.48	+1.0
1,117,301	+		DDA3937_RS04985	0.48	+1.9
1,117,301	+		DDA3937_RS04985	0.48	+0.9
1,117,320	-		DDA3937_RS04985	0.49	-0.9
1,117,327	-		DDA3937_RS04985	0.49	-1.5
1,117,409	+		DDA3937_RS04985	0.52	-0.8
1,117,410	-		DDA3937_RS04985	0.52	+0.5
1,117,410	-		DDA3937_RS04985	0.52	-4.0
1,117,499	+		DDA3937_RS04985	0.55	+2.0
1,117,500	-		DDA3937_RS04985	0.55	-2.5
1,117,543	+		DDA3937_RS04985	0.57	-1.3
1,117,543	+		DDA3937_RS04985	0.57	-1.8
1,117,543	+		DDA3937_RS04985	0.57	-0.3
1,117,543	+		DDA3937_RS04985	0.57	+3.0
1,117,544	-		DDA3937_RS04985	0.57	+0.3
1,117,544	-		DDA3937_RS04985	0.57	-0.5
1,117,544	-		DDA3937_RS04985	0.57	+3.3
1,117,558	+		DDA3937_RS04985	0.57	+0.8
1,117,559	-		DDA3937_RS04985	0.57	-0.8
1,117,613	+		DDA3937_RS04985	0.59	-0.8
1,117,613	+		DDA3937_RS04985	0.59	-0.6
1,117,613	+		DDA3937_RS04985	0.59	-0.8
1,117,614	-		DDA3937_RS04985	0.59	-1.2
1,117,614	-		DDA3937_RS04985	0.59	+1.3
1,117,642	+				-0.1
1,117,642	+		DDA3937_RS04985	0.60	+0.5
1,117,642	+		DDA3937_RS04985	0.60	+1.0
1,117,642	+		DDA3937_RS04985	0.60	-1.4
1,117,642	+		DDA3937_RS04985	0.60	-2.5
1,117,642	+		DDA3937_RS04985	0.60	-2.5
1,117,642	+		DDA3937_RS04985	0.60	+1.3
1,117,642	+		DDA3937_RS04985	0.60	+0.9
1,117,643	-		DDA3937_RS04985	0.60	+1.3
1,117,643	-		DDA3937_RS04985	0.60	-1.3
1,117,643	-		DDA3937_RS04985	0.60	+0.4
1,117,643	-		DDA3937_RS04985	0.60	-1.4
1,117,646	+		DDA3937_RS04985	0.60	+1.7
1,117,646	+		DDA3937_RS04985	0.60	-1.7
1,117,646	+		DDA3937_RS04985	0.60	-0.0
1,117,646	+		DDA3937_RS04985	0.60	-2.8
1,117,719	-		DDA3937_RS04985	0.63	+0.3
1,117,740	+		DDA3937_RS04985	0.63	-0.0
1,117,740	+		DDA3937_RS04985	0.63	-0.8
1,117,740	+		DDA3937_RS04985	0.63	-0.7
1,117,740	+		DDA3937_RS04985	0.63	+1.3
1,117,741	-		DDA3937_RS04985	0.63	-2.2
1,117,741	-		DDA3937_RS04985	0.63	+1.4
1,117,741	-		DDA3937_RS04985	0.63	-2.1
1,117,763	+		DDA3937_RS04985	0.64	+1.6
1,117,763	+		DDA3937_RS04985	0.64	-0.5
1,117,763	+		DDA3937_RS04985	0.64	-1.7
1,117,764	-		DDA3937_RS04985	0.64	+1.6
1,117,764	-		DDA3937_RS04985	0.64	-1.6
1,117,764	-		DDA3937_RS04985	0.64	+1.2
1,117,764	-		DDA3937_RS04985	0.64	-1.3
1,117,764	-		DDA3937_RS04985	0.64	+1.5
1,117,764	-		DDA3937_RS04985	0.64	-1.0
1,117,764	-				+0.9
1,117,815	-		DDA3937_RS04985	0.66	-0.8
1,117,853	+		DDA3937_RS04985	0.67	-1.8
1,117,853	+		DDA3937_RS04985	0.67	+0.7
1,117,853	+		DDA3937_RS04985	0.67	-0.7
1,117,854	-		DDA3937_RS04985	0.67	+2.2
1,117,854	-		DDA3937_RS04985	0.67	-2.0
1,117,854	-		DDA3937_RS04985	0.67	-0.1
1,117,876	+		DDA3937_RS04985	0.68	-1.3
1,117,898	+		DDA3937_RS04985	0.69	+0.5
1,117,898	+		DDA3937_RS04985	0.69	-1.2
1,117,898	+		DDA3937_RS04985	0.69	+0.1
1,117,898	+		DDA3937_RS04985	0.69	-0.1
1,117,939	+		DDA3937_RS04985	0.70	+1.0
1,117,961	+		DDA3937_RS04985	0.71	+0.6
1,118,175	+		DDA3937_RS04985	0.78	-0.1
1,118,175	+		DDA3937_RS04985	0.78	+0.2
1,118,175	+		DDA3937_RS04985	0.78	-2.7
1,118,176	-		DDA3937_RS04985	0.78	+0.7
1,118,176	-		DDA3937_RS04985	0.78	-1.3
1,118,177	+		DDA3937_RS04985	0.78	-2.1
1,118,177	+		DDA3937_RS04985	0.78	+2.0
1,118,177	+		DDA3937_RS04985	0.78	-2.5
1,118,177	+		DDA3937_RS04985	0.78	-2.3
1,118,177	+		DDA3937_RS04985	0.78	-0.8
1,118,177	+		DDA3937_RS04985	0.78	+2.3
1,118,178	-		DDA3937_RS04985	0.78	+1.4
1,118,178	-		DDA3937_RS04985	0.78	-2.1
1,118,178	-		DDA3937_RS04985	0.78	-0.8
1,118,178	-		DDA3937_RS04985	0.78	+1.2
1,118,178	-		DDA3937_RS04985	0.78	+1.2
1,118,178	-		DDA3937_RS04985	0.78	-2.0
1,118,178	-		DDA3937_RS04985	0.78	-1.5
1,118,179	+		DDA3937_RS04985	0.78	+2.7
1,118,179	+		DDA3937_RS04985	0.78	+1.6
1,118,179	+		DDA3937_RS04985	0.78	-2.3
1,118,179	+		DDA3937_RS04985	0.78	-1.1
1,118,179	+		DDA3937_RS04985	0.78	-0.3
1,118,180	-		DDA3937_RS04985	0.78	-3.1
1,118,180	-		DDA3937_RS04985	0.78	-2.0
1,118,180	-		DDA3937_RS04985	0.78	-1.3
1,118,202	+		DDA3937_RS04985	0.79	-0.3
1,118,203	-		DDA3937_RS04985	0.79	-1.3
1,118,203	-		DDA3937_RS04985	0.79	-1.6
1,118,203	-		DDA3937_RS04985	0.79	-1.5
1,118,216	+		DDA3937_RS04985	0.80	-3.4
1,118,216	+		DDA3937_RS04985	0.80	+0.1
1,118,217	-		DDA3937_RS04985	0.80	-2.3
1,118,217	-				+0.5
1,118,221	+		DDA3937_RS04985	0.80	-1.8
1,118,221	+		DDA3937_RS04985	0.80	-2.5
1,118,222	-		DDA3937_RS04985	0.80	-1.5
1,118,222	-				+2.7
1,118,222	-		DDA3937_RS04985	0.80	-2.4
1,118,222	-		DDA3937_RS04985	0.80	-1.1
1,118,222	-		DDA3937_RS04985	0.80	-0.8
1,118,265	+		DDA3937_RS04985	0.81	-2.9
1,118,266	-		DDA3937_RS04985	0.81	-0.3
1,118,266	-		DDA3937_RS04985	0.81	+1.3
1,118,269	+		DDA3937_RS04985	0.82	+0.3
1,118,270	-		DDA3937_RS04985	0.82	+1.6
1,118,270	-		DDA3937_RS04985	0.82	-0.4
1,118,288	+		DDA3937_RS04985	0.82	-0.2
1,118,288	+		DDA3937_RS04985	0.82	-1.3
1,118,378	+		DDA3937_RS04985	0.85	-2.7
1,118,378	+		DDA3937_RS04985	0.85	+1.0
1,118,378	+		DDA3937_RS04985	0.85	+1.3
1,118,378	+		DDA3937_RS04985	0.85	-0.2
1,118,388	-		DDA3937_RS04985	0.86	+0.7
1,118,455	+		DDA3937_RS04985	0.88	+2.3
1,118,455	+		DDA3937_RS04985	0.88	-2.4
1,118,456	-		DDA3937_RS04985	0.88	-0.8
1,118,456	-		DDA3937_RS04985	0.88	-0.6
1,118,520	+				-1.7
1,118,608	-				-0.8
1,118,693	+				+0.3
1,118,720	+				-1.3
1,118,720	+				+2.2
1,118,721	-				+0.4
1,118,721	-				-2.2
1,118,721	-				-0.5
1,118,757	+				-1.3
1,118,805	-				+0.6
1,118,810	+				+1.0
1,118,811	-				-0.2
1,118,835	-				+0.2
1,118,911	+				-1.1
1,118,912	-				+1.1
1,118,921	-				+1.2
1,118,921	-				-1.9
1,118,956	+				-2.1
1,118,956	+				-1.8
1,118,957	-				-1.5
1,118,957	-				+0.1
1,118,957	-				+1.4
1,118,962	+				+0.3
1,118,962	+				-0.8
1,118,962	+				-1.2
1,118,963	-				+0.0
1,118,963	-				-0.0
1,118,963	-				+0.8
1,119,134	-		DDA3937_RS04990	0.16	+0.6
1,119,171	-		DDA3937_RS04990	0.19	-0.3
1,119,247	-		DDA3937_RS04990	0.25	-0.5
1,119,462	+		DDA3937_RS04990	0.41	-2.5
1,119,483	+		DDA3937_RS04990	0.43	+0.9
1,119,518	+		DDA3937_RS04990	0.45	-4.1
1,119,519	-		DDA3937_RS04990	0.45	+1.6
1,119,519	-		DDA3937_RS04990	0.45	+0.4
1,119,521	-		DDA3937_RS04990	0.45	-1.7
1,119,548	+		DDA3937_RS04990	0.47	+1.8
1,119,549	-		DDA3937_RS04990	0.48	-0.8
1,119,549	-		DDA3937_RS04990	0.48	-0.6
1,119,549	-		DDA3937_RS04990	0.48	-2.4
1,119,549	-		DDA3937_RS04990	0.48	-0.5
1,119,587	+		DDA3937_RS04990	0.50	+1.0
1,119,587	+		DDA3937_RS04990	0.50	-2.3
1,119,587	+		DDA3937_RS04990	0.50	-0.1