Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04445 and DDA3937_RS04450 are separated by 3 nucleotides DDA3937_RS04450 and DDA3937_RS04455 are separated by 227 nucleotides DDA3937_RS04455 and DDA3937_RS04460 are separated by 2 nucleotides
DDA3937_RS04445: DDA3937_RS04445 - MacB family efflux pump subunit, at 980,802 to 982,748
_RS04445
DDA3937_RS04450: DDA3937_RS04450 - efflux RND transporter periplasmic adaptor subunit, at 982,752 to 983,969
_RS04450
DDA3937_RS04455: DDA3937_RS04455 - response regulator transcription factor, at 984,197 to 984,877
_RS04455
DDA3937_RS04460: DDA3937_RS04460 - HAMP domain-containing protein, at 984,880 to 986,283
_RS04460
Position (kb) 982
983
984 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 981.779 kb on + strand, within DDA3937_RS04445 at 981.779 kb on + strand, within DDA3937_RS04445 at 981.815 kb on + strand, within DDA3937_RS04445 at 981.815 kb on + strand, within DDA3937_RS04445 at 981.816 kb on - strand, within DDA3937_RS04445 at 981.816 kb on - strand, within DDA3937_RS04445 at 982.136 kb on + strand, within DDA3937_RS04445 at 982.160 kb on + strand, within DDA3937_RS04445 at 982.160 kb on + strand, within DDA3937_RS04445 at 982.160 kb on + strand, within DDA3937_RS04445 at 982.160 kb on + strand, within DDA3937_RS04445 at 982.160 kb on + strand, within DDA3937_RS04445 at 982.161 kb on - strand, within DDA3937_RS04445 at 982.286 kb on + strand, within DDA3937_RS04445 at 982.408 kb on + strand, within DDA3937_RS04445 at 982.408 kb on + strand at 982.409 kb on - strand, within DDA3937_RS04445 at 982.409 kb on - strand, within DDA3937_RS04445 at 982.452 kb on - strand, within DDA3937_RS04445 at 982.452 kb on - strand, within DDA3937_RS04445 at 982.589 kb on + strand at 982.589 kb on + strand at 982.677 kb on + strand at 982.703 kb on + strand at 982.704 kb on - strand at 982.753 kb on + strand at 982.794 kb on - strand at 982.863 kb on - strand at 982.864 kb on + strand at 982.865 kb on - strand at 982.865 kb on - strand at 982.865 kb on - strand at 982.865 kb on - strand at 982.899 kb on + strand, within DDA3937_RS04450 at 982.899 kb on + strand, within DDA3937_RS04450 at 982.899 kb on + strand, within DDA3937_RS04450 at 982.899 kb on + strand, within DDA3937_RS04450 at 983.009 kb on + strand, within DDA3937_RS04450 at 983.009 kb on + strand, within DDA3937_RS04450 at 983.010 kb on - strand, within DDA3937_RS04450 at 983.011 kb on + strand, within DDA3937_RS04450 at 983.011 kb on + strand, within DDA3937_RS04450 at 983.011 kb on + strand, within DDA3937_RS04450 at 983.012 kb on - strand, within DDA3937_RS04450 at 983.012 kb on - strand, within DDA3937_RS04450 at 983.033 kb on + strand, within DDA3937_RS04450 at 983.034 kb on - strand, within DDA3937_RS04450 at 983.034 kb on - strand, within DDA3937_RS04450 at 983.077 kb on + strand, within DDA3937_RS04450 at 983.077 kb on + strand, within DDA3937_RS04450 at 983.077 kb on + strand, within DDA3937_RS04450 at 983.078 kb on - strand, within DDA3937_RS04450 at 983.078 kb on - strand, within DDA3937_RS04450 at 983.078 kb on - strand, within DDA3937_RS04450 at 983.078 kb on - strand, within DDA3937_RS04450 at 983.111 kb on + strand, within DDA3937_RS04450 at 983.126 kb on + strand, within DDA3937_RS04450 at 983.204 kb on - strand, within DDA3937_RS04450 at 983.229 kb on - strand, within DDA3937_RS04450 at 983.265 kb on - strand, within DDA3937_RS04450 at 983.420 kb on - strand, within DDA3937_RS04450 at 983.463 kb on + strand, within DDA3937_RS04450 at 983.463 kb on + strand, within DDA3937_RS04450 at 983.464 kb on - strand, within DDA3937_RS04450 at 983.683 kb on - strand, within DDA3937_RS04450 at 983.858 kb on + strand at 983.858 kb on + strand at 983.860 kb on + strand at 983.860 kb on + strand at 983.861 kb on - strand at 983.861 kb on - strand at 983.861 kb on - strand at 983.861 kb on - strand at 983.996 kb on - strand at 984.060 kb on + strand at 984.060 kb on + strand at 984.061 kb on - strand at 984.061 kb on - strand at 984.064 kb on + strand at 984.065 kb on - strand at 984.066 kb on + strand at 984.066 kb on + strand at 984.066 kb on + strand at 984.066 kb on + strand at 984.067 kb on - strand at 984.067 kb on - strand at 984.067 kb on - strand at 984.098 kb on - strand at 984.118 kb on + strand at 984.118 kb on + strand at 984.166 kb on + strand at 984.166 kb on + strand at 984.167 kb on - strand at 984.167 kb on - strand at 984.197 kb on - strand at 984.214 kb on - strand at 984.251 kb on + strand at 984.252 kb on - strand at 984.252 kb on - strand at 984.329 kb on + strand, within DDA3937_RS04455 at 984.329 kb on + strand, within DDA3937_RS04455 at 984.329 kb on + strand, within DDA3937_RS04455 at 984.330 kb on - strand, within DDA3937_RS04455 at 984.332 kb on - strand, within DDA3937_RS04455 at 984.332 kb on - strand, within DDA3937_RS04455 at 984.365 kb on - strand, within DDA3937_RS04455 at 984.381 kb on + strand, within DDA3937_RS04455 at 984.421 kb on + strand, within DDA3937_RS04455 at 984.421 kb on + strand, within DDA3937_RS04455 at 984.422 kb on - strand, within DDA3937_RS04455 at 984.422 kb on - strand, within DDA3937_RS04455 at 984.422 kb on - strand, within DDA3937_RS04455 at 984.422 kb on - strand, within DDA3937_RS04455 at 984.445 kb on + strand, within DDA3937_RS04455 at 984.445 kb on + strand, within DDA3937_RS04455 at 984.485 kb on + strand, within DDA3937_RS04455 at 984.485 kb on + strand, within DDA3937_RS04455 at 984.485 kb on + strand, within DDA3937_RS04455 at 984.485 kb on + strand, within DDA3937_RS04455 at 984.486 kb on - strand, within DDA3937_RS04455 at 984.486 kb on - strand, within DDA3937_RS04455 at 984.486 kb on - strand, within DDA3937_RS04455 at 984.486 kb on - strand, within DDA3937_RS04455 at 984.593 kb on + strand, within DDA3937_RS04455 at 984.594 kb on - strand, within DDA3937_RS04455 at 984.594 kb on - strand, within DDA3937_RS04455 at 984.764 kb on + strand, within DDA3937_RS04455 at 984.764 kb on + strand, within DDA3937_RS04455 at 984.764 kb on + strand, within DDA3937_RS04455 at 984.764 kb on + strand, within DDA3937_RS04455 at 984.765 kb on - strand, within DDA3937_RS04455 at 984.765 kb on - strand, within DDA3937_RS04455 at 984.797 kb on - strand, within DDA3937_RS04455 at 984.829 kb on + strand at 984.830 kb on - strand at 984.957 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 981,779 + DDA3937_RS04445 0.50 -2.3 981,779 + DDA3937_RS04445 0.50 -1.1 981,815 + DDA3937_RS04445 0.52 -2.7 981,815 + DDA3937_RS04445 0.52 +0.2 981,816 - DDA3937_RS04445 0.52 +0.4 981,816 - DDA3937_RS04445 0.52 -2.5 982,136 + DDA3937_RS04445 0.69 +1.7 982,160 + DDA3937_RS04445 0.70 +0.9 982,160 + DDA3937_RS04445 0.70 +0.1 982,160 + DDA3937_RS04445 0.70 -0.0 982,160 + DDA3937_RS04445 0.70 +1.7 982,160 + DDA3937_RS04445 0.70 -2.4 982,161 - DDA3937_RS04445 0.70 -2.4 982,286 + DDA3937_RS04445 0.76 -0.8 982,408 + DDA3937_RS04445 0.82 -1.4 982,408 + +2.7 982,409 - DDA3937_RS04445 0.83 -0.9 982,409 - DDA3937_RS04445 0.83 +1.4 982,452 - DDA3937_RS04445 0.85 -1.8 982,452 - DDA3937_RS04445 0.85 +0.4 982,589 + +1.8 982,589 + -0.8 982,677 + +1.3 982,703 + -1.0 982,704 - -1.5 982,753 + +2.9 982,794 - +1.5 982,863 - -2.0 982,864 + +0.5 982,865 - -1.1 982,865 - +0.2 982,865 - +1.7 982,865 - +0.8 982,899 + DDA3937_RS04450 0.12 +3.1 982,899 + DDA3937_RS04450 0.12 +0.9 982,899 + DDA3937_RS04450 0.12 +0.9 982,899 + DDA3937_RS04450 0.12 -2.7 983,009 + DDA3937_RS04450 0.21 +0.5 983,009 + DDA3937_RS04450 0.21 -2.6 983,010 - DDA3937_RS04450 0.21 +2.7 983,011 + DDA3937_RS04450 0.21 -0.3 983,011 + DDA3937_RS04450 0.21 -1.5 983,011 + DDA3937_RS04450 0.21 +3.0 983,012 - DDA3937_RS04450 0.21 -1.9 983,012 - DDA3937_RS04450 0.21 +0.1 983,033 + DDA3937_RS04450 0.23 +1.4 983,034 - DDA3937_RS04450 0.23 -0.8 983,034 - DDA3937_RS04450 0.23 -0.1 983,077 + DDA3937_RS04450 0.27 -1.5 983,077 + DDA3937_RS04450 0.27 +0.5 983,077 + DDA3937_RS04450 0.27 +1.3 983,078 - DDA3937_RS04450 0.27 -1.8 983,078 - DDA3937_RS04450 0.27 -1.1 983,078 - DDA3937_RS04450 0.27 -1.6 983,078 - DDA3937_RS04450 0.27 +0.9 983,111 + DDA3937_RS04450 0.29 +0.5 983,126 + DDA3937_RS04450 0.31 +0.1 983,204 - DDA3937_RS04450 0.37 -0.8 983,229 - DDA3937_RS04450 0.39 -1.7 983,265 - DDA3937_RS04450 0.42 +0.6 983,420 - DDA3937_RS04450 0.55 -3.3 983,463 + DDA3937_RS04450 0.58 -2.3 983,463 + DDA3937_RS04450 0.58 +2.0 983,464 - DDA3937_RS04450 0.58 -0.5 983,683 - DDA3937_RS04450 0.76 +0.8 983,858 + -3.3 983,858 + -1.5 983,860 + +2.5 983,860 + +1.7 983,861 - -0.9 983,861 - -0.8 983,861 - -1.5 983,861 - -0.5 983,996 - -1.8 984,060 + -0.8 984,060 + -0.1 984,061 - +0.9 984,061 - +0.3 984,064 + -0.4 984,065 - -2.6 984,066 + +1.6 984,066 + -0.1 984,066 + +0.8 984,066 + -1.5 984,067 - -0.8 984,067 - +3.0 984,067 - -0.8 984,098 - +0.5 984,118 + -3.7 984,118 + +3.1 984,166 + -1.7 984,166 + -2.1 984,167 - +0.5 984,167 - -2.7 984,197 - +0.4 984,214 - -2.9 984,251 + -1.7 984,252 - -0.6 984,252 - +2.0 984,329 + DDA3937_RS04455 0.19 -1.4 984,329 + DDA3937_RS04455 0.19 -2.1 984,329 + DDA3937_RS04455 0.19 +0.8 984,330 - DDA3937_RS04455 0.20 -0.3 984,332 - DDA3937_RS04455 0.20 -0.4 984,332 - DDA3937_RS04455 0.20 -2.2 984,365 - DDA3937_RS04455 0.25 -1.2 984,381 + DDA3937_RS04455 0.27 +1.9 984,421 + DDA3937_RS04455 0.33 +1.0 984,421 + DDA3937_RS04455 0.33 +1.3 984,422 - DDA3937_RS04455 0.33 -2.1 984,422 - DDA3937_RS04455 0.33 -1.3 984,422 - DDA3937_RS04455 0.33 -2.2 984,422 - DDA3937_RS04455 0.33 -1.1 984,445 + DDA3937_RS04455 0.36 -1.1 984,445 + DDA3937_RS04455 0.36 +2.0 984,485 + DDA3937_RS04455 0.42 -0.1 984,485 + DDA3937_RS04455 0.42 +2.2 984,485 + DDA3937_RS04455 0.42 +1.0 984,485 + DDA3937_RS04455 0.42 -3.0 984,486 - DDA3937_RS04455 0.42 -0.5 984,486 - DDA3937_RS04455 0.42 -1.7 984,486 - DDA3937_RS04455 0.42 +0.7 984,486 - DDA3937_RS04455 0.42 -0.2 984,593 + DDA3937_RS04455 0.58 -0.5 984,594 - DDA3937_RS04455 0.58 +1.6 984,594 - DDA3937_RS04455 0.58 -0.6 984,764 + DDA3937_RS04455 0.83 +1.0 984,764 + DDA3937_RS04455 0.83 +0.7 984,764 + DDA3937_RS04455 0.83 +1.4 984,764 + DDA3937_RS04455 0.83 -1.7 984,765 - DDA3937_RS04455 0.83 -1.4 984,765 - DDA3937_RS04455 0.83 -3.4 984,797 - DDA3937_RS04455 0.88 +0.4 984,829 + +0.3 984,830 - -2.4 984,957 - -2.4
Or see this region's nucleotide sequence