Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS21675 and DDA3937_RS04440 are separated by 38 nucleotides DDA3937_RS04440 and DDA3937_RS04445 are separated by 567 nucleotides DDA3937_RS04445 and DDA3937_RS04450 are separated by 3 nucleotides
DDA3937_RS21675: DDA3937_RS21675 - DUF4225 domain-containing protein, at 978,973 to 979,806
_RS21675
DDA3937_RS04440: DDA3937_RS04440 - hypothetical protein, at 979,845 to 980,234
_RS04440
DDA3937_RS04445: DDA3937_RS04445 - MacB family efflux pump subunit, at 980,802 to 982,748
_RS04445
DDA3937_RS04450: DDA3937_RS04450 - efflux RND transporter periplasmic adaptor subunit, at 982,752 to 983,969
_RS04450
Position (kb) 980
981
982
983 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 979.858 kb on + strand at 980.413 kb on - strand at 980.422 kb on - strand at 980.429 kb on - strand at 980.434 kb on - strand at 980.493 kb on + strand at 980.494 kb on - strand at 980.498 kb on - strand at 980.498 kb on - strand at 980.590 kb on + strand at 980.593 kb on - strand at 980.617 kb on - strand at 980.647 kb on - strand at 980.656 kb on + strand at 980.657 kb on - strand at 980.658 kb on + strand at 980.658 kb on + strand at 980.658 kb on + strand at 980.658 kb on + strand at 980.658 kb on + strand at 980.659 kb on - strand at 980.659 kb on - strand at 980.679 kb on - strand at 980.679 kb on - strand at 980.682 kb on + strand at 980.683 kb on - strand at 980.683 kb on - strand at 980.683 kb on - strand at 980.683 kb on - strand at 980.683 kb on - strand at 980.694 kb on + strand at 980.695 kb on - strand at 980.923 kb on + strand at 980.923 kb on + strand at 980.924 kb on - strand at 980.982 kb on + strand at 980.982 kb on + strand at 980.982 kb on + strand at 980.983 kb on - strand at 980.992 kb on - strand at 981.076 kb on - strand, within DDA3937_RS04445 at 981.081 kb on + strand, within DDA3937_RS04445 at 981.379 kb on + strand, within DDA3937_RS04445 at 981.379 kb on + strand, within DDA3937_RS04445 at 981.380 kb on - strand, within DDA3937_RS04445 at 981.392 kb on + strand, within DDA3937_RS04445 at 981.516 kb on - strand, within DDA3937_RS04445 at 981.602 kb on - strand, within DDA3937_RS04445 at 981.602 kb on - strand, within DDA3937_RS04445 at 981.602 kb on - strand, within DDA3937_RS04445 at 981.602 kb on - strand, within DDA3937_RS04445 at 981.602 kb on - strand, within DDA3937_RS04445 at 981.602 kb on - strand, within DDA3937_RS04445 at 981.660 kb on - strand, within DDA3937_RS04445 at 981.667 kb on + strand, within DDA3937_RS04445 at 981.715 kb on + strand, within DDA3937_RS04445 at 981.715 kb on + strand, within DDA3937_RS04445 at 981.715 kb on + strand, within DDA3937_RS04445 at 981.715 kb on + strand, within DDA3937_RS04445 at 981.715 kb on + strand, within DDA3937_RS04445 at 981.715 kb on + strand, within DDA3937_RS04445 at 981.715 kb on + strand, within DDA3937_RS04445 at 981.715 kb on + strand, within DDA3937_RS04445 at 981.716 kb on - strand, within DDA3937_RS04445 at 981.716 kb on - strand, within DDA3937_RS04445 at 981.716 kb on - strand, within DDA3937_RS04445 at 981.716 kb on - strand, within DDA3937_RS04445 at 981.716 kb on - strand at 981.716 kb on - strand, within DDA3937_RS04445 at 981.716 kb on - strand, within DDA3937_RS04445 at 981.716 kb on - strand, within DDA3937_RS04445 at 981.716 kb on - strand, within DDA3937_RS04445 at 981.716 kb on - strand, within DDA3937_RS04445 at 981.716 kb on - strand, within DDA3937_RS04445 at 981.779 kb on + strand, within DDA3937_RS04445 at 981.779 kb on + strand, within DDA3937_RS04445 at 981.815 kb on + strand, within DDA3937_RS04445 at 981.815 kb on + strand, within DDA3937_RS04445 at 981.816 kb on - strand, within DDA3937_RS04445 at 981.816 kb on - strand, within DDA3937_RS04445 at 982.136 kb on + strand, within DDA3937_RS04445 at 982.160 kb on + strand, within DDA3937_RS04445 at 982.160 kb on + strand, within DDA3937_RS04445 at 982.160 kb on + strand, within DDA3937_RS04445 at 982.160 kb on + strand, within DDA3937_RS04445 at 982.160 kb on + strand, within DDA3937_RS04445 at 982.161 kb on - strand, within DDA3937_RS04445 at 982.286 kb on + strand, within DDA3937_RS04445 at 982.408 kb on + strand, within DDA3937_RS04445 at 982.408 kb on + strand at 982.409 kb on - strand, within DDA3937_RS04445 at 982.409 kb on - strand, within DDA3937_RS04445 at 982.452 kb on - strand, within DDA3937_RS04445 at 982.452 kb on - strand, within DDA3937_RS04445 at 982.589 kb on + strand at 982.589 kb on + strand at 982.677 kb on + strand at 982.703 kb on + strand at 982.704 kb on - strand at 982.753 kb on + strand at 982.794 kb on - strand at 982.863 kb on - strand at 982.864 kb on + strand at 982.865 kb on - strand at 982.865 kb on - strand at 982.865 kb on - strand at 982.865 kb on - strand at 982.899 kb on + strand, within DDA3937_RS04450 at 982.899 kb on + strand, within DDA3937_RS04450 at 982.899 kb on + strand, within DDA3937_RS04450 at 982.899 kb on + strand, within DDA3937_RS04450 at 983.009 kb on + strand, within DDA3937_RS04450 at 983.009 kb on + strand, within DDA3937_RS04450 at 983.010 kb on - strand, within DDA3937_RS04450 at 983.011 kb on + strand, within DDA3937_RS04450 at 983.011 kb on + strand, within DDA3937_RS04450 at 983.011 kb on + strand, within DDA3937_RS04450 at 983.012 kb on - strand, within DDA3937_RS04450 at 983.012 kb on - strand, within DDA3937_RS04450 at 983.033 kb on + strand, within DDA3937_RS04450 at 983.034 kb on - strand, within DDA3937_RS04450 at 983.034 kb on - strand, within DDA3937_RS04450 at 983.077 kb on + strand, within DDA3937_RS04450 at 983.077 kb on + strand, within DDA3937_RS04450 at 983.077 kb on + strand, within DDA3937_RS04450 at 983.078 kb on - strand, within DDA3937_RS04450 at 983.078 kb on - strand, within DDA3937_RS04450 at 983.078 kb on - strand, within DDA3937_RS04450 at 983.078 kb on - strand, within DDA3937_RS04450 at 983.111 kb on + strand, within DDA3937_RS04450 at 983.126 kb on + strand, within DDA3937_RS04450 at 983.204 kb on - strand, within DDA3937_RS04450 at 983.229 kb on - strand, within DDA3937_RS04450 at 983.265 kb on - strand, within DDA3937_RS04450 at 983.420 kb on - strand, within DDA3937_RS04450 at 983.463 kb on + strand, within DDA3937_RS04450 at 983.463 kb on + strand, within DDA3937_RS04450 at 983.464 kb on - strand, within DDA3937_RS04450 at 983.683 kb on - strand, within DDA3937_RS04450
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 979,858 + -0.4 980,413 - -3.0 980,422 - +1.2 980,429 - -3.4 980,434 - +2.2 980,493 + +2.4 980,494 - +0.6 980,498 - +0.9 980,498 - -2.0 980,590 + -0.3 980,593 - -2.2 980,617 - -0.8 980,647 - +0.7 980,656 + +0.2 980,657 - -0.2 980,658 + -2.1 980,658 + -2.2 980,658 + -0.1 980,658 + -1.0 980,658 + -0.5 980,659 - -1.5 980,659 - -1.3 980,679 - -2.0 980,679 - +1.8 980,682 + +0.1 980,683 - -0.3 980,683 - +0.2 980,683 - -0.9 980,683 - -2.7 980,683 - -1.1 980,694 + +2.4 980,695 - -1.1 980,923 + +1.4 980,923 + +0.2 980,924 - +1.2 980,982 + -1.7 980,982 + -1.2 980,982 + -1.5 980,983 - +3.5 980,992 - +0.1 981,076 - DDA3937_RS04445 0.14 +0.3 981,081 + DDA3937_RS04445 0.14 -2.4 981,379 + DDA3937_RS04445 0.30 +0.2 981,379 + DDA3937_RS04445 0.30 -1.8 981,380 - DDA3937_RS04445 0.30 +0.1 981,392 + DDA3937_RS04445 0.30 -2.5 981,516 - DDA3937_RS04445 0.37 -0.1 981,602 - DDA3937_RS04445 0.41 +1.0 981,602 - DDA3937_RS04445 0.41 -0.8 981,602 - DDA3937_RS04445 0.41 -1.9 981,602 - DDA3937_RS04445 0.41 -0.2 981,602 - DDA3937_RS04445 0.41 +3.5 981,602 - DDA3937_RS04445 0.41 -0.4 981,660 - DDA3937_RS04445 0.44 -1.3 981,667 + DDA3937_RS04445 0.44 +1.7 981,715 + DDA3937_RS04445 0.47 +3.0 981,715 + DDA3937_RS04445 0.47 +2.2 981,715 + DDA3937_RS04445 0.47 -0.8 981,715 + DDA3937_RS04445 0.47 +1.5 981,715 + DDA3937_RS04445 0.47 -1.1 981,715 + DDA3937_RS04445 0.47 +0.2 981,715 + DDA3937_RS04445 0.47 +0.1 981,715 + DDA3937_RS04445 0.47 +1.3 981,716 - DDA3937_RS04445 0.47 -1.4 981,716 - DDA3937_RS04445 0.47 +0.2 981,716 - DDA3937_RS04445 0.47 +1.0 981,716 - DDA3937_RS04445 0.47 -1.7 981,716 - +3.4 981,716 - DDA3937_RS04445 0.47 +1.5 981,716 - DDA3937_RS04445 0.47 -1.0 981,716 - DDA3937_RS04445 0.47 +0.1 981,716 - DDA3937_RS04445 0.47 +2.1 981,716 - DDA3937_RS04445 0.47 -0.1 981,716 - DDA3937_RS04445 0.47 -2.1 981,779 + DDA3937_RS04445 0.50 -2.3 981,779 + DDA3937_RS04445 0.50 -1.1 981,815 + DDA3937_RS04445 0.52 -2.7 981,815 + DDA3937_RS04445 0.52 +0.2 981,816 - DDA3937_RS04445 0.52 +0.4 981,816 - DDA3937_RS04445 0.52 -2.5 982,136 + DDA3937_RS04445 0.69 +1.7 982,160 + DDA3937_RS04445 0.70 +0.9 982,160 + DDA3937_RS04445 0.70 +0.1 982,160 + DDA3937_RS04445 0.70 -0.0 982,160 + DDA3937_RS04445 0.70 +1.7 982,160 + DDA3937_RS04445 0.70 -2.4 982,161 - DDA3937_RS04445 0.70 -2.4 982,286 + DDA3937_RS04445 0.76 -0.8 982,408 + DDA3937_RS04445 0.82 -1.4 982,408 + +2.7 982,409 - DDA3937_RS04445 0.83 -0.9 982,409 - DDA3937_RS04445 0.83 +1.4 982,452 - DDA3937_RS04445 0.85 -1.8 982,452 - DDA3937_RS04445 0.85 +0.4 982,589 + +1.8 982,589 + -0.8 982,677 + +1.3 982,703 + -1.0 982,704 - -1.5 982,753 + +2.9 982,794 - +1.5 982,863 - -2.0 982,864 + +0.5 982,865 - -1.1 982,865 - +0.2 982,865 - +1.7 982,865 - +0.8 982,899 + DDA3937_RS04450 0.12 +3.1 982,899 + DDA3937_RS04450 0.12 +0.9 982,899 + DDA3937_RS04450 0.12 +0.9 982,899 + DDA3937_RS04450 0.12 -2.7 983,009 + DDA3937_RS04450 0.21 +0.5 983,009 + DDA3937_RS04450 0.21 -2.6 983,010 - DDA3937_RS04450 0.21 +2.7 983,011 + DDA3937_RS04450 0.21 -0.3 983,011 + DDA3937_RS04450 0.21 -1.5 983,011 + DDA3937_RS04450 0.21 +3.0 983,012 - DDA3937_RS04450 0.21 -1.9 983,012 - DDA3937_RS04450 0.21 +0.1 983,033 + DDA3937_RS04450 0.23 +1.4 983,034 - DDA3937_RS04450 0.23 -0.8 983,034 - DDA3937_RS04450 0.23 -0.1 983,077 + DDA3937_RS04450 0.27 -1.5 983,077 + DDA3937_RS04450 0.27 +0.5 983,077 + DDA3937_RS04450 0.27 +1.3 983,078 - DDA3937_RS04450 0.27 -1.8 983,078 - DDA3937_RS04450 0.27 -1.1 983,078 - DDA3937_RS04450 0.27 -1.6 983,078 - DDA3937_RS04450 0.27 +0.9 983,111 + DDA3937_RS04450 0.29 +0.5 983,126 + DDA3937_RS04450 0.31 +0.1 983,204 - DDA3937_RS04450 0.37 -0.8 983,229 - DDA3937_RS04450 0.39 -1.7 983,265 - DDA3937_RS04450 0.42 +0.6 983,420 - DDA3937_RS04450 0.55 -3.3 983,463 + DDA3937_RS04450 0.58 -2.3 983,463 + DDA3937_RS04450 0.58 +2.0 983,464 - DDA3937_RS04450 0.58 -0.5 983,683 - DDA3937_RS04450 0.76 +0.8
Or see this region's nucleotide sequence