Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04390 and DDA3937_RS04395 are separated by 191 nucleotides DDA3937_RS04395 and DDA3937_RS04400 are separated by 447 nucleotides
DDA3937_RS04390: DDA3937_RS04390 - ABC transporter ATP-binding protein/permease, at 968,257 to 969,918
_RS04390
DDA3937_RS04395: DDA3937_RS04395 - RpoE-regulated lipoprotein, at 970,110 to 970,715
_RS04395
DDA3937_RS04400: DDA3937_RS04400 - glycosyltransferase, at 971,163 to 972,437
_RS04400
Position (kb) 970
971 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 969.188 kb on + strand, within DDA3937_RS04390 at 969.188 kb on + strand, within DDA3937_RS04390 at 969.188 kb on + strand, within DDA3937_RS04390 at 969.189 kb on - strand, within DDA3937_RS04390 at 969.220 kb on + strand, within DDA3937_RS04390 at 969.220 kb on + strand, within DDA3937_RS04390 at 969.220 kb on + strand, within DDA3937_RS04390 at 969.220 kb on + strand, within DDA3937_RS04390 at 969.221 kb on - strand, within DDA3937_RS04390 at 969.221 kb on - strand, within DDA3937_RS04390 at 969.221 kb on - strand, within DDA3937_RS04390 at 969.221 kb on - strand, within DDA3937_RS04390 at 969.221 kb on - strand, within DDA3937_RS04390 at 969.221 kb on - strand, within DDA3937_RS04390 at 969.223 kb on + strand, within DDA3937_RS04390 at 969.223 kb on + strand at 969.223 kb on + strand, within DDA3937_RS04390 at 969.305 kb on + strand, within DDA3937_RS04390 at 969.305 kb on + strand, within DDA3937_RS04390 at 969.305 kb on + strand, within DDA3937_RS04390 at 969.306 kb on - strand, within DDA3937_RS04390 at 969.309 kb on + strand, within DDA3937_RS04390 at 969.309 kb on + strand, within DDA3937_RS04390 at 969.309 kb on + strand, within DDA3937_RS04390 at 969.309 kb on + strand, within DDA3937_RS04390 at 969.309 kb on + strand, within DDA3937_RS04390 at 969.310 kb on - strand, within DDA3937_RS04390 at 969.314 kb on + strand, within DDA3937_RS04390 at 969.314 kb on + strand, within DDA3937_RS04390 at 969.314 kb on + strand at 969.314 kb on + strand, within DDA3937_RS04390 at 969.314 kb on + strand, within DDA3937_RS04390 at 969.314 kb on + strand, within DDA3937_RS04390 at 969.314 kb on + strand, within DDA3937_RS04390 at 969.314 kb on + strand, within DDA3937_RS04390 at 969.315 kb on - strand, within DDA3937_RS04390 at 969.315 kb on - strand, within DDA3937_RS04390 at 969.315 kb on - strand, within DDA3937_RS04390 at 969.315 kb on - strand, within DDA3937_RS04390 at 969.315 kb on - strand, within DDA3937_RS04390 at 969.315 kb on - strand, within DDA3937_RS04390 at 969.315 kb on - strand, within DDA3937_RS04390 at 969.315 kb on - strand, within DDA3937_RS04390 at 969.485 kb on - strand, within DDA3937_RS04390 at 969.487 kb on + strand, within DDA3937_RS04390 at 969.487 kb on + strand, within DDA3937_RS04390 at 969.487 kb on + strand at 969.488 kb on - strand, within DDA3937_RS04390 at 969.488 kb on - strand, within DDA3937_RS04390 at 969.488 kb on - strand, within DDA3937_RS04390 at 969.544 kb on + strand, within DDA3937_RS04390 at 969.545 kb on - strand, within DDA3937_RS04390 at 969.548 kb on + strand, within DDA3937_RS04390 at 969.548 kb on + strand, within DDA3937_RS04390 at 969.662 kb on + strand, within DDA3937_RS04390 at 969.662 kb on + strand, within DDA3937_RS04390 at 969.757 kb on + strand at 969.757 kb on + strand at 969.758 kb on - strand at 969.889 kb on + strand at 969.889 kb on + strand at 969.890 kb on - strand at 969.890 kb on - strand at 969.970 kb on + strand at 969.970 kb on + strand at 969.970 kb on + strand at 969.971 kb on - strand at 969.971 kb on - strand at 969.971 kb on - strand at 970.092 kb on + strand at 970.092 kb on + strand at 970.092 kb on + strand at 970.092 kb on + strand at 970.093 kb on - strand at 970.171 kb on + strand, within DDA3937_RS04395 at 970.171 kb on + strand, within DDA3937_RS04395 at 970.172 kb on - strand, within DDA3937_RS04395 at 970.326 kb on + strand, within DDA3937_RS04395 at 970.326 kb on + strand, within DDA3937_RS04395 at 970.370 kb on - strand, within DDA3937_RS04395 at 970.377 kb on + strand, within DDA3937_RS04395 at 970.377 kb on + strand, within DDA3937_RS04395 at 970.377 kb on + strand, within DDA3937_RS04395 at 970.378 kb on - strand, within DDA3937_RS04395 at 970.378 kb on - strand, within DDA3937_RS04395 at 970.592 kb on + strand, within DDA3937_RS04395 at 970.593 kb on - strand, within DDA3937_RS04395 at 970.605 kb on + strand, within DDA3937_RS04395 at 970.605 kb on + strand, within DDA3937_RS04395 at 970.605 kb on + strand, within DDA3937_RS04395 at 970.659 kb on - strand at 970.659 kb on - strand at 970.727 kb on - strand at 970.792 kb on + strand at 970.792 kb on + strand at 970.792 kb on + strand at 970.792 kb on + strand at 970.792 kb on + strand at 970.792 kb on + strand at 970.792 kb on + strand at 970.793 kb on - strand at 970.845 kb on + strand at 970.846 kb on - strand at 970.861 kb on - strand at 970.883 kb on + strand at 970.884 kb on - strand at 970.884 kb on - strand at 970.884 kb on - strand at 970.913 kb on + strand at 970.914 kb on - strand at 970.925 kb on - strand at 970.953 kb on + strand at 970.980 kb on - strand at 970.980 kb on - strand at 971.004 kb on + strand at 971.004 kb on + strand at 971.004 kb on + strand at 971.004 kb on + strand at 971.005 kb on - strand at 971.005 kb on - strand at 971.005 kb on - strand at 971.006 kb on + strand at 971.090 kb on + strand at 971.090 kb on + strand at 971.090 kb on + strand at 971.091 kb on - strand at 971.111 kb on - strand at 971.151 kb on + strand at 971.213 kb on + strand at 971.213 kb on + strand at 971.213 kb on + strand at 971.214 kb on - strand at 971.263 kb on + strand at 971.520 kb on + strand, within DDA3937_RS04400 at 971.616 kb on + strand, within DDA3937_RS04400 at 971.616 kb on + strand, within DDA3937_RS04400 at 971.617 kb on - strand, within DDA3937_RS04400
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 969,188 + DDA3937_RS04390 0.56 +0.2 969,188 + DDA3937_RS04390 0.56 +0.8 969,188 + DDA3937_RS04390 0.56 -2.0 969,189 - DDA3937_RS04390 0.56 +0.4 969,220 + DDA3937_RS04390 0.58 -1.3 969,220 + DDA3937_RS04390 0.58 -1.7 969,220 + DDA3937_RS04390 0.58 -0.2 969,220 + DDA3937_RS04390 0.58 -0.7 969,221 - DDA3937_RS04390 0.58 +1.3 969,221 - DDA3937_RS04390 0.58 -1.7 969,221 - DDA3937_RS04390 0.58 +0.3 969,221 - DDA3937_RS04390 0.58 -2.2 969,221 - DDA3937_RS04390 0.58 -1.1 969,221 - DDA3937_RS04390 0.58 -1.6 969,223 + DDA3937_RS04390 0.58 -2.8 969,223 + +0.5 969,223 + DDA3937_RS04390 0.58 +0.6 969,305 + DDA3937_RS04390 0.63 -1.5 969,305 + DDA3937_RS04390 0.63 -3.0 969,305 + DDA3937_RS04390 0.63 +0.9 969,306 - DDA3937_RS04390 0.63 +0.8 969,309 + DDA3937_RS04390 0.63 +1.2 969,309 + DDA3937_RS04390 0.63 -1.4 969,309 + DDA3937_RS04390 0.63 +0.8 969,309 + DDA3937_RS04390 0.63 -2.1 969,309 + DDA3937_RS04390 0.63 +1.6 969,310 - DDA3937_RS04390 0.63 -0.8 969,314 + DDA3937_RS04390 0.64 -0.1 969,314 + DDA3937_RS04390 0.64 +3.0 969,314 + -0.8 969,314 + DDA3937_RS04390 0.64 -1.9 969,314 + DDA3937_RS04390 0.64 +0.7 969,314 + DDA3937_RS04390 0.64 +1.3 969,314 + DDA3937_RS04390 0.64 +1.2 969,314 + DDA3937_RS04390 0.64 -1.8 969,315 - DDA3937_RS04390 0.64 +1.3 969,315 - DDA3937_RS04390 0.64 -1.8 969,315 - DDA3937_RS04390 0.64 -0.4 969,315 - DDA3937_RS04390 0.64 +0.4 969,315 - DDA3937_RS04390 0.64 -2.3 969,315 - DDA3937_RS04390 0.64 -0.5 969,315 - DDA3937_RS04390 0.64 +1.1 969,315 - DDA3937_RS04390 0.64 +0.3 969,485 - DDA3937_RS04390 0.74 +0.8 969,487 + DDA3937_RS04390 0.74 +1.8 969,487 + DDA3937_RS04390 0.74 -2.0 969,487 + -0.5 969,488 - DDA3937_RS04390 0.74 +1.5 969,488 - DDA3937_RS04390 0.74 +1.0 969,488 - DDA3937_RS04390 0.74 -0.8 969,544 + DDA3937_RS04390 0.77 -1.0 969,545 - DDA3937_RS04390 0.77 -1.7 969,548 + DDA3937_RS04390 0.78 -0.8 969,548 + DDA3937_RS04390 0.78 +0.4 969,662 + DDA3937_RS04390 0.85 +0.6 969,662 + DDA3937_RS04390 0.85 +2.5 969,757 + -0.8 969,757 + +1.0 969,758 - -2.8 969,889 + -1.3 969,889 + -1.8 969,890 - -1.8 969,890 - +0.8 969,970 + -0.8 969,970 + +2.9 969,970 + -2.4 969,971 - -1.1 969,971 - +0.2 969,971 - +2.4 970,092 + +1.7 970,092 + -1.3 970,092 + +0.7 970,092 + +0.1 970,093 - -3.4 970,171 + DDA3937_RS04395 0.10 -2.9 970,171 + DDA3937_RS04395 0.10 -0.5 970,172 - DDA3937_RS04395 0.10 -3.5 970,326 + DDA3937_RS04395 0.36 +0.9 970,326 + DDA3937_RS04395 0.36 +0.5 970,370 - DDA3937_RS04395 0.43 -0.0 970,377 + DDA3937_RS04395 0.44 +0.7 970,377 + DDA3937_RS04395 0.44 -2.2 970,377 + DDA3937_RS04395 0.44 +1.0 970,378 - DDA3937_RS04395 0.44 +2.8 970,378 - DDA3937_RS04395 0.44 -2.6 970,592 + DDA3937_RS04395 0.80 +0.5 970,593 - DDA3937_RS04395 0.80 -1.3 970,605 + DDA3937_RS04395 0.82 -1.1 970,605 + DDA3937_RS04395 0.82 +2.3 970,605 + DDA3937_RS04395 0.82 -0.8 970,659 - -0.9 970,659 - -1.7 970,727 - -2.6 970,792 + +0.9 970,792 + -1.5 970,792 + -1.5 970,792 + +1.0 970,792 + -1.0 970,792 + -3.8 970,792 + -0.8 970,793 - -0.8 970,845 + +0.3 970,846 - -0.7 970,861 - +1.2 970,883 + -0.1 970,884 - +1.5 970,884 - +0.9 970,884 - +0.9 970,913 + -0.5 970,914 - +0.4 970,925 - -1.9 970,953 + -0.5 970,980 - +0.7 970,980 - -1.3 971,004 + +0.9 971,004 + +2.2 971,004 + -0.7 971,004 + -2.8 971,005 - -1.1 971,005 - -3.4 971,005 - -1.1 971,006 + +1.4 971,090 + -2.0 971,090 + +0.2 971,090 + +1.0 971,091 - -0.5 971,111 - -0.5 971,151 + -0.2 971,213 + -1.8 971,213 + -0.8 971,213 + +1.4 971,214 - -1.5 971,263 + +4.9 971,520 + DDA3937_RS04400 0.28 -0.5 971,616 + DDA3937_RS04400 0.36 +0.8 971,616 + DDA3937_RS04400 0.36 -1.2 971,617 - DDA3937_RS04400 0.36 +0.6
Or see this region's nucleotide sequence