Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03930 and DDA3937_RS03935 are separated by 22 nucleotides DDA3937_RS03935 and DDA3937_RS21885 overlap by 8 nucleotides
DDA3937_RS03930: DDA3937_RS03930 - DNA phosphorothioation-dependent restriction protein DptH, at 873,441 to 878,521
_RS03930
DDA3937_RS03935: DDA3937_RS03935 - hypothetical protein, at 878,544 to 879,647
_RS03935
DDA3937_RS21885: DDA3937_RS21885 - hypothetical protein, at 879,640 to 880,596
_RS21885
Position (kb) 878
879
880 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 877.559 kb on - strand, within DDA3937_RS03930 at 877.582 kb on + strand, within DDA3937_RS03930 at 877.582 kb on + strand, within DDA3937_RS03930 at 877.583 kb on - strand, within DDA3937_RS03930 at 877.583 kb on - strand, within DDA3937_RS03930 at 877.583 kb on - strand, within DDA3937_RS03930 at 877.622 kb on + strand, within DDA3937_RS03930 at 877.622 kb on + strand, within DDA3937_RS03930 at 877.623 kb on - strand, within DDA3937_RS03930 at 877.664 kb on + strand, within DDA3937_RS03930 at 877.671 kb on + strand, within DDA3937_RS03930 at 877.672 kb on - strand, within DDA3937_RS03930 at 877.672 kb on - strand, within DDA3937_RS03930 at 877.672 kb on - strand, within DDA3937_RS03930 at 877.672 kb on - strand, within DDA3937_RS03930 at 877.675 kb on + strand, within DDA3937_RS03930 at 877.676 kb on - strand, within DDA3937_RS03930 at 877.676 kb on - strand, within DDA3937_RS03930 at 877.685 kb on + strand, within DDA3937_RS03930 at 877.685 kb on + strand, within DDA3937_RS03930 at 877.685 kb on + strand, within DDA3937_RS03930 at 877.686 kb on - strand, within DDA3937_RS03930 at 877.686 kb on - strand, within DDA3937_RS03930 at 877.696 kb on - strand, within DDA3937_RS03930 at 877.696 kb on - strand, within DDA3937_RS03930 at 877.722 kb on + strand, within DDA3937_RS03930 at 877.722 kb on + strand, within DDA3937_RS03930 at 877.783 kb on + strand, within DDA3937_RS03930 at 877.783 kb on + strand, within DDA3937_RS03930 at 877.893 kb on + strand, within DDA3937_RS03930 at 877.893 kb on + strand, within DDA3937_RS03930 at 877.893 kb on + strand, within DDA3937_RS03930 at 877.894 kb on - strand, within DDA3937_RS03930 at 877.894 kb on - strand, within DDA3937_RS03930 at 877.894 kb on - strand, within DDA3937_RS03930 at 877.894 kb on - strand, within DDA3937_RS03930 at 877.894 kb on - strand, within DDA3937_RS03930 at 877.894 kb on - strand, within DDA3937_RS03930 at 877.974 kb on + strand, within DDA3937_RS03930 at 878.010 kb on - strand, within DDA3937_RS03930 at 878.010 kb on - strand, within DDA3937_RS03930 at 878.102 kb on + strand at 878.102 kb on + strand at 878.103 kb on - strand at 878.148 kb on - strand at 878.148 kb on - strand at 878.158 kb on + strand at 878.195 kb on - strand at 878.247 kb on - strand at 878.306 kb on - strand at 878.371 kb on + strand at 878.456 kb on + strand at 878.537 kb on + strand at 878.541 kb on - strand at 878.560 kb on + strand at 878.682 kb on - strand, within DDA3937_RS03935 at 878.702 kb on + strand, within DDA3937_RS03935 at 878.775 kb on - strand, within DDA3937_RS03935 at 878.800 kb on + strand, within DDA3937_RS03935 at 878.801 kb on - strand, within DDA3937_RS03935 at 878.816 kb on - strand, within DDA3937_RS03935 at 878.828 kb on + strand, within DDA3937_RS03935 at 878.829 kb on - strand, within DDA3937_RS03935 at 878.833 kb on + strand, within DDA3937_RS03935 at 878.834 kb on - strand, within DDA3937_RS03935 at 878.837 kb on + strand, within DDA3937_RS03935 at 878.838 kb on - strand, within DDA3937_RS03935 at 879.346 kb on + strand, within DDA3937_RS03935 at 879.444 kb on + strand, within DDA3937_RS03935 at 879.445 kb on - strand, within DDA3937_RS03935 at 879.487 kb on + strand, within DDA3937_RS03935 at 879.493 kb on + strand, within DDA3937_RS03935 at 879.493 kb on + strand, within DDA3937_RS03935 at 879.527 kb on + strand, within DDA3937_RS03935 at 879.683 kb on + strand at 879.756 kb on - strand, within DDA3937_RS21885 at 879.767 kb on - strand, within DDA3937_RS21885 at 879.787 kb on - strand, within DDA3937_RS21885 at 879.789 kb on + strand, within DDA3937_RS21885 at 879.917 kb on - strand, within DDA3937_RS21885 at 879.975 kb on - strand, within DDA3937_RS21885 at 880.140 kb on + strand, within DDA3937_RS21885 at 880.141 kb on - strand, within DDA3937_RS21885 at 880.154 kb on - strand, within DDA3937_RS21885 at 880.201 kb on - strand, within DDA3937_RS21885 at 880.242 kb on + strand, within DDA3937_RS21885 at 880.243 kb on - strand, within DDA3937_RS21885 at 880.369 kb on - strand, within DDA3937_RS21885 at 880.543 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 877,559 - DDA3937_RS03930 0.81 +0.9 877,582 + DDA3937_RS03930 0.81 -0.5 877,582 + DDA3937_RS03930 0.81 -1.3 877,583 - DDA3937_RS03930 0.82 -1.9 877,583 - DDA3937_RS03930 0.82 -3.9 877,583 - DDA3937_RS03930 0.82 -2.2 877,622 + DDA3937_RS03930 0.82 -1.3 877,622 + DDA3937_RS03930 0.82 -1.5 877,623 - DDA3937_RS03930 0.82 +1.1 877,664 + DDA3937_RS03930 0.83 -1.6 877,671 + DDA3937_RS03930 0.83 -2.2 877,672 - DDA3937_RS03930 0.83 -0.6 877,672 - DDA3937_RS03930 0.83 +0.8 877,672 - DDA3937_RS03930 0.83 -1.5 877,672 - DDA3937_RS03930 0.83 -1.6 877,675 + DDA3937_RS03930 0.83 +1.1 877,676 - DDA3937_RS03930 0.83 +0.3 877,676 - DDA3937_RS03930 0.83 -2.4 877,685 + DDA3937_RS03930 0.84 -3.1 877,685 + DDA3937_RS03930 0.84 -2.2 877,685 + DDA3937_RS03930 0.84 -1.3 877,686 - DDA3937_RS03930 0.84 +3.8 877,686 - DDA3937_RS03930 0.84 -0.8 877,696 - DDA3937_RS03930 0.84 -1.5 877,696 - DDA3937_RS03930 0.84 -1.6 877,722 + DDA3937_RS03930 0.84 -1.1 877,722 + DDA3937_RS03930 0.84 +1.5 877,783 + DDA3937_RS03930 0.85 -2.5 877,783 + DDA3937_RS03930 0.85 -0.3 877,893 + DDA3937_RS03930 0.88 +2.8 877,893 + DDA3937_RS03930 0.88 -0.2 877,893 + DDA3937_RS03930 0.88 +0.4 877,894 - DDA3937_RS03930 0.88 -2.7 877,894 - DDA3937_RS03930 0.88 +1.2 877,894 - DDA3937_RS03930 0.88 -1.1 877,894 - DDA3937_RS03930 0.88 -4.1 877,894 - DDA3937_RS03930 0.88 -0.1 877,894 - DDA3937_RS03930 0.88 -1.5 877,974 + DDA3937_RS03930 0.89 -1.7 878,010 - DDA3937_RS03930 0.90 -0.5 878,010 - DDA3937_RS03930 0.90 -0.8 878,102 + +1.3 878,102 + +1.2 878,103 - +0.6 878,148 - -1.1 878,148 - +1.2 878,158 + -1.5 878,195 - +0.5 878,247 - -0.1 878,306 - -0.5 878,371 + +1.4 878,456 + +1.5 878,537 + -0.8 878,541 - -1.8 878,560 + +1.0 878,682 - DDA3937_RS03935 0.12 -1.3 878,702 + DDA3937_RS03935 0.14 -2.4 878,775 - DDA3937_RS03935 0.21 -1.6 878,800 + DDA3937_RS03935 0.23 -1.3 878,801 - DDA3937_RS03935 0.23 -3.4 878,816 - DDA3937_RS03935 0.25 -2.4 878,828 + DDA3937_RS03935 0.26 -2.2 878,829 - DDA3937_RS03935 0.26 -4.2 878,833 + DDA3937_RS03935 0.26 +0.7 878,834 - DDA3937_RS03935 0.26 -2.1 878,837 + DDA3937_RS03935 0.27 +0.4 878,838 - DDA3937_RS03935 0.27 -2.6 879,346 + DDA3937_RS03935 0.73 -1.5 879,444 + DDA3937_RS03935 0.82 -0.1 879,445 - DDA3937_RS03935 0.82 -1.1 879,487 + DDA3937_RS03935 0.85 +1.1 879,493 + DDA3937_RS03935 0.86 +0.5 879,493 + DDA3937_RS03935 0.86 +1.6 879,527 + DDA3937_RS03935 0.89 -1.5 879,683 + -0.8 879,756 - DDA3937_RS21885 0.12 -1.5 879,767 - DDA3937_RS21885 0.13 +1.5 879,787 - DDA3937_RS21885 0.15 -2.0 879,789 + DDA3937_RS21885 0.16 +1.2 879,917 - DDA3937_RS21885 0.29 +0.5 879,975 - DDA3937_RS21885 0.35 +2.5 880,140 + DDA3937_RS21885 0.52 +1.5 880,141 - DDA3937_RS21885 0.52 +0.8 880,154 - DDA3937_RS21885 0.54 -0.0 880,201 - DDA3937_RS21885 0.59 -1.7 880,242 + DDA3937_RS21885 0.63 +1.0 880,243 - DDA3937_RS21885 0.63 -1.5 880,369 - DDA3937_RS21885 0.76 +0.8 880,543 - -3.3
Or see this region's nucleotide sequence