Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03700 and DDA3937_RS03705 are separated by 138 nucleotides DDA3937_RS03705 and DDA3937_RS03710 are separated by 56 nucleotides
DDA3937_RS03700: DDA3937_RS03700 - inositol 2-dehydrogenase, at 818,314 to 819,300
_RS03700
DDA3937_RS03705: DDA3937_RS03705 - substrate-binding domain-containing protein, at 819,439 to 820,377
_RS03705
DDA3937_RS03710: DDA3937_RS03710 - sugar ABC transporter ATP-binding protein, at 820,434 to 821,981
_RS03710
Position (kb) 819
820
821 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 818.445 kb on + strand, within DDA3937_RS03700 at 818.449 kb on + strand, within DDA3937_RS03700 at 818.450 kb on - strand, within DDA3937_RS03700 at 818.499 kb on - strand, within DDA3937_RS03700 at 818.754 kb on + strand, within DDA3937_RS03700 at 818.755 kb on - strand, within DDA3937_RS03700 at 818.788 kb on + strand, within DDA3937_RS03700 at 818.788 kb on + strand, within DDA3937_RS03700 at 818.789 kb on - strand, within DDA3937_RS03700 at 819.066 kb on + strand, within DDA3937_RS03700 at 819.157 kb on + strand, within DDA3937_RS03700 at 819.202 kb on - strand at 819.244 kb on + strand at 819.245 kb on - strand at 819.304 kb on - strand at 819.338 kb on + strand at 819.338 kb on + strand at 819.338 kb on + strand at 819.338 kb on + strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.344 kb on + strand at 819.351 kb on + strand at 819.351 kb on + strand at 819.351 kb on + strand at 819.351 kb on + strand at 819.351 kb on + strand at 819.352 kb on - strand at 819.352 kb on - strand at 819.355 kb on + strand at 819.355 kb on + strand at 819.356 kb on - strand at 819.369 kb on - strand at 819.369 kb on - strand at 819.369 kb on - strand at 819.369 kb on - strand at 819.369 kb on - strand at 819.369 kb on - strand at 819.385 kb on + strand at 819.385 kb on + strand at 819.386 kb on - strand at 819.386 kb on - strand at 819.386 kb on - strand at 819.386 kb on - strand at 819.389 kb on + strand at 819.389 kb on + strand at 819.389 kb on + strand at 819.390 kb on - strand at 819.390 kb on - strand at 819.390 kb on - strand at 819.410 kb on + strand at 819.410 kb on + strand at 819.410 kb on + strand at 819.410 kb on + strand at 819.410 kb on + strand at 819.410 kb on + strand at 819.410 kb on + strand at 819.411 kb on - strand at 819.411 kb on - strand at 819.411 kb on - strand at 819.411 kb on - strand at 819.411 kb on - strand at 819.411 kb on - strand at 819.411 kb on - strand at 819.411 kb on - strand at 819.411 kb on - strand at 819.414 kb on + strand at 819.414 kb on + strand at 819.414 kb on + strand at 819.415 kb on - strand at 819.415 kb on - strand at 819.415 kb on - strand at 819.424 kb on + strand at 819.425 kb on - strand at 819.425 kb on - strand at 819.528 kb on + strand at 819.528 kb on + strand at 819.529 kb on - strand at 819.534 kb on + strand, within DDA3937_RS03705 at 819.535 kb on - strand, within DDA3937_RS03705 at 819.823 kb on + strand, within DDA3937_RS03705 at 819.823 kb on + strand, within DDA3937_RS03705 at 819.823 kb on + strand, within DDA3937_RS03705 at 819.823 kb on + strand, within DDA3937_RS03705 at 819.824 kb on - strand, within DDA3937_RS03705 at 819.824 kb on - strand, within DDA3937_RS03705 at 819.824 kb on - strand, within DDA3937_RS03705 at 819.824 kb on - strand, within DDA3937_RS03705 at 819.824 kb on - strand, within DDA3937_RS03705 at 819.824 kb on - strand, within DDA3937_RS03705 at 819.824 kb on - strand, within DDA3937_RS03705 at 819.973 kb on + strand, within DDA3937_RS03705 at 819.973 kb on + strand, within DDA3937_RS03705 at 819.974 kb on - strand, within DDA3937_RS03705 at 820.057 kb on - strand, within DDA3937_RS03705 at 820.275 kb on + strand, within DDA3937_RS03705 at 820.376 kb on - strand at 820.429 kb on - strand at 820.455 kb on - strand at 820.568 kb on + strand at 820.569 kb on - strand at 820.692 kb on + strand, within DDA3937_RS03710 at 820.692 kb on + strand, within DDA3937_RS03710 at 820.692 kb on + strand, within DDA3937_RS03710 at 820.693 kb on - strand, within DDA3937_RS03710 at 820.719 kb on - strand, within DDA3937_RS03710 at 820.719 kb on - strand, within DDA3937_RS03710 at 820.821 kb on + strand, within DDA3937_RS03710 at 820.821 kb on + strand, within DDA3937_RS03710 at 820.821 kb on + strand, within DDA3937_RS03710 at 820.821 kb on + strand, within DDA3937_RS03710 at 820.822 kb on - strand, within DDA3937_RS03710 at 820.822 kb on - strand, within DDA3937_RS03710 at 820.837 kb on + strand, within DDA3937_RS03710 at 820.837 kb on + strand, within DDA3937_RS03710 at 820.838 kb on - strand, within DDA3937_RS03710 at 820.838 kb on - strand, within DDA3937_RS03710 at 821.025 kb on + strand, within DDA3937_RS03710 at 821.025 kb on + strand, within DDA3937_RS03710 at 821.025 kb on + strand, within DDA3937_RS03710 at 821.026 kb on - strand, within DDA3937_RS03710 at 821.026 kb on - strand, within DDA3937_RS03710 at 821.026 kb on - strand, within DDA3937_RS03710 at 821.077 kb on + strand, within DDA3937_RS03710 at 821.077 kb on + strand at 821.077 kb on + strand, within DDA3937_RS03710 at 821.078 kb on - strand, within DDA3937_RS03710 at 821.094 kb on + strand, within DDA3937_RS03710
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 818,445 + DDA3937_RS03700 0.13 -0.5 818,449 + DDA3937_RS03700 0.14 -3.0 818,450 - DDA3937_RS03700 0.14 -0.8 818,499 - DDA3937_RS03700 0.19 -0.6 818,754 + DDA3937_RS03700 0.45 +1.2 818,755 - DDA3937_RS03700 0.45 +1.8 818,788 + DDA3937_RS03700 0.48 -1.6 818,788 + DDA3937_RS03700 0.48 +1.2 818,789 - DDA3937_RS03700 0.48 +0.9 819,066 + DDA3937_RS03700 0.76 +0.5 819,157 + DDA3937_RS03700 0.85 -2.0 819,202 - +1.1 819,244 + -2.8 819,245 - -1.9 819,304 - -0.1 819,338 + +0.2 819,338 + -2.8 819,338 + +0.7 819,338 + -1.3 819,339 - +2.2 819,339 - +0.0 819,339 - -0.3 819,339 - -0.5 819,344 + -2.2 819,351 + -0.0 819,351 + -0.4 819,351 + -1.6 819,351 + -0.1 819,351 + -1.6 819,352 - -0.6 819,352 - -1.2 819,355 + +0.3 819,355 + +0.5 819,356 - -0.5 819,369 - +0.5 819,369 - -3.2 819,369 - -0.1 819,369 - -2.4 819,369 - +2.0 819,369 - -1.6 819,385 + +0.4 819,385 + +0.2 819,386 - +0.5 819,386 - +0.4 819,386 - +0.5 819,386 - -3.3 819,389 + +2.3 819,389 + -2.5 819,389 + +1.9 819,390 - +1.3 819,390 - -0.3 819,390 - -0.5 819,410 + +1.5 819,410 + -2.0 819,410 + +1.3 819,410 + +1.4 819,410 + -1.5 819,410 + -1.5 819,410 + -0.2 819,411 - -1.5 819,411 - +1.7 819,411 - +1.4 819,411 - -1.9 819,411 - +0.6 819,411 - +0.2 819,411 - -1.3 819,411 - -0.0 819,411 - -0.2 819,414 + +2.1 819,414 + -2.9 819,414 + -0.5 819,415 - +1.0 819,415 - +0.9 819,415 - -0.0 819,424 + -2.8 819,425 - +0.3 819,425 - +0.6 819,528 + +0.5 819,528 + +1.5 819,529 - -2.3 819,534 + DDA3937_RS03705 0.10 +1.4 819,535 - DDA3937_RS03705 0.10 +1.1 819,823 + DDA3937_RS03705 0.41 -2.0 819,823 + DDA3937_RS03705 0.41 +0.7 819,823 + DDA3937_RS03705 0.41 +0.5 819,823 + DDA3937_RS03705 0.41 -1.3 819,824 - DDA3937_RS03705 0.41 -0.3 819,824 - DDA3937_RS03705 0.41 +0.2 819,824 - DDA3937_RS03705 0.41 -2.7 819,824 - DDA3937_RS03705 0.41 -0.9 819,824 - DDA3937_RS03705 0.41 -1.8 819,824 - DDA3937_RS03705 0.41 -1.9 819,824 - DDA3937_RS03705 0.41 -0.8 819,973 + DDA3937_RS03705 0.57 +1.2 819,973 + DDA3937_RS03705 0.57 +0.1 819,974 - DDA3937_RS03705 0.57 +1.1 820,057 - DDA3937_RS03705 0.66 -2.2 820,275 + DDA3937_RS03705 0.89 -0.8 820,376 - -0.8 820,429 - +0.9 820,455 - -2.7 820,568 + +0.3 820,569 - -3.7 820,692 + DDA3937_RS03710 0.17 -0.5 820,692 + DDA3937_RS03710 0.17 +0.2 820,692 + DDA3937_RS03710 0.17 +1.0 820,693 - DDA3937_RS03710 0.17 -1.6 820,719 - DDA3937_RS03710 0.18 +1.5 820,719 - DDA3937_RS03710 0.18 -0.7 820,821 + DDA3937_RS03710 0.25 +0.1 820,821 + DDA3937_RS03710 0.25 +0.4 820,821 + DDA3937_RS03710 0.25 +0.2 820,821 + DDA3937_RS03710 0.25 -2.7 820,822 - DDA3937_RS03710 0.25 -2.6 820,822 - DDA3937_RS03710 0.25 -1.1 820,837 + DDA3937_RS03710 0.26 -2.9 820,837 + DDA3937_RS03710 0.26 +2.0 820,838 - DDA3937_RS03710 0.26 +1.0 820,838 - DDA3937_RS03710 0.26 -0.4 821,025 + DDA3937_RS03710 0.38 -0.7 821,025 + DDA3937_RS03710 0.38 +1.2 821,025 + DDA3937_RS03710 0.38 -2.0 821,026 - DDA3937_RS03710 0.38 -0.6 821,026 - DDA3937_RS03710 0.38 -2.6 821,026 - DDA3937_RS03710 0.38 -0.5 821,077 + DDA3937_RS03710 0.42 -2.5 821,077 + +0.5 821,077 + DDA3937_RS03710 0.42 +0.3 821,078 - DDA3937_RS03710 0.42 -1.6 821,094 + DDA3937_RS03710 0.43 +0.6
Or see this region's nucleotide sequence