Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03635

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03630 and DDA3937_RS03635 are separated by 267 nucleotidesDDA3937_RS03635 and DDA3937_RS03640 are separated by 10 nucleotides DDA3937_RS03630: DDA3937_RS03630 - helix-turn-helix transcriptional regulator, at 800,617 to 801,441 _RS03630 DDA3937_RS03635: DDA3937_RS03635 - aspartate aminotransferase family protein, at 801,709 to 803,079 _RS03635 DDA3937_RS03640: DDA3937_RS03640 - iron-containing alcohol dehydrogenase, at 803,090 to 804,244 _RS03640 Position (kb) 801 802 803 804Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 800.789 kb on + strand, within DDA3937_RS03630at 800.790 kb on - strand, within DDA3937_RS03630at 800.794 kb on - strand, within DDA3937_RS03630at 800.794 kb on - strand, within DDA3937_RS03630at 800.888 kb on - strand, within DDA3937_RS03630at 800.898 kb on - strand, within DDA3937_RS03630at 801.061 kb on + strand, within DDA3937_RS03630at 801.062 kb on - strand, within DDA3937_RS03630at 801.175 kb on + strand, within DDA3937_RS03630at 801.175 kb on + strand, within DDA3937_RS03630at 801.176 kb on - strand, within DDA3937_RS03630at 801.176 kb on - strand, within DDA3937_RS03630at 801.187 kb on + strand, within DDA3937_RS03630at 801.187 kb on + strand, within DDA3937_RS03630at 801.187 kb on + strand, within DDA3937_RS03630at 801.188 kb on - strand, within DDA3937_RS03630at 801.188 kb on - strand, within DDA3937_RS03630at 801.188 kb on - strand, within DDA3937_RS03630at 801.188 kb on - strand, within DDA3937_RS03630at 801.189 kb on + strand, within DDA3937_RS03630at 801.189 kb on + strand, within DDA3937_RS03630at 801.189 kb on + strand, within DDA3937_RS03630at 801.189 kb on + strand, within DDA3937_RS03630at 801.190 kb on - strandat 801.190 kb on - strand, within DDA3937_RS03630at 801.211 kb on + strand, within DDA3937_RS03630at 801.276 kb on + strand, within DDA3937_RS03630at 801.325 kb on + strand, within DDA3937_RS03630at 801.388 kb on + strandat 801.492 kb on + strandat 801.492 kb on + strandat 801.493 kb on - strandat 801.625 kb on + strandat 801.625 kb on + strandat 801.626 kb on - strandat 801.649 kb on + strandat 801.652 kb on - strandat 801.652 kb on - strandat 801.652 kb on - strandat 801.652 kb on - strandat 801.708 kb on + strandat 801.709 kb on - strandat 801.728 kb on + strandat 801.728 kb on + strandat 801.728 kb on + strandat 801.729 kb on - strandat 801.729 kb on - strandat 801.731 kb on + strandat 801.742 kb on + strandat 801.742 kb on + strandat 801.742 kb on + strandat 801.742 kb on + strandat 801.742 kb on + strandat 801.742 kb on + strandat 801.742 kb on + strandat 801.742 kb on + strandat 801.743 kb on - strandat 801.743 kb on - strandat 801.743 kb on - strandat 801.743 kb on - strandat 801.743 kb on - strandat 801.743 kb on - strandat 801.743 kb on - strandat 801.743 kb on - strandat 801.743 kb on - strandat 801.744 kb on + strandat 801.745 kb on - strandat 801.745 kb on - strandat 801.841 kb on + strandat 802.009 kb on + strand, within DDA3937_RS03635at 802.009 kb on + strand, within DDA3937_RS03635at 802.285 kb on + strand, within DDA3937_RS03635at 802.285 kb on + strand, within DDA3937_RS03635at 802.285 kb on + strand, within DDA3937_RS03635at 802.285 kb on + strand, within DDA3937_RS03635at 802.286 kb on - strand, within DDA3937_RS03635at 802.286 kb on - strand, within DDA3937_RS03635at 802.286 kb on - strand, within DDA3937_RS03635at 802.286 kb on - strand, within DDA3937_RS03635at 802.286 kb on - strand, within DDA3937_RS03635at 802.330 kb on + strand, within DDA3937_RS03635at 802.331 kb on - strand, within DDA3937_RS03635at 802.331 kb on - strand, within DDA3937_RS03635at 802.331 kb on - strand, within DDA3937_RS03635at 802.331 kb on - strand, within DDA3937_RS03635at 802.508 kb on + strand, within DDA3937_RS03635at 802.508 kb on + strand, within DDA3937_RS03635at 802.509 kb on - strand, within DDA3937_RS03635at 802.570 kb on + strand, within DDA3937_RS03635at 802.571 kb on - strand, within DDA3937_RS03635at 802.591 kb on + strand, within DDA3937_RS03635at 802.592 kb on - strand, within DDA3937_RS03635at 802.592 kb on - strand, within DDA3937_RS03635at 802.625 kb on - strand, within DDA3937_RS03635at 802.625 kb on - strand, within DDA3937_RS03635at 802.625 kb on - strand, within DDA3937_RS03635at 802.638 kb on + strand, within DDA3937_RS03635at 802.638 kb on + strand, within DDA3937_RS03635at 802.639 kb on - strand, within DDA3937_RS03635at 802.642 kb on + strand, within DDA3937_RS03635at 802.764 kb on - strand, within DDA3937_RS03635at 802.764 kb on - strand, within DDA3937_RS03635at 802.825 kb on + strand, within DDA3937_RS03635at 802.870 kb on + strandat 802.871 kb on - strand, within DDA3937_RS03635at 802.871 kb on - strand, within DDA3937_RS03635at 802.871 kb on - strand, within DDA3937_RS03635at 802.871 kb on - strand, within DDA3937_RS03635at 802.871 kb on - strand, within DDA3937_RS03635at 802.873 kb on + strand, within DDA3937_RS03635at 802.873 kb on + strand, within DDA3937_RS03635at 802.873 kb on + strand, within DDA3937_RS03635at 802.874 kb on - strand, within DDA3937_RS03635at 802.874 kb on - strand, within DDA3937_RS03635at 802.874 kb on - strand, within DDA3937_RS03635at 802.874 kb on - strand, within DDA3937_RS03635at 802.938 kb on + strand, within DDA3937_RS03635at 802.939 kb on - strand, within DDA3937_RS03635at 802.997 kb on - strandat 802.997 kb on - strandat 803.103 kb on - strandat 803.103 kb on - strandat 803.306 kb on - strand, within DDA3937_RS03640at 803.426 kb on - strand, within DDA3937_RS03640at 803.426 kb on - strand, within DDA3937_RS03640at 803.426 kb on - strand, within DDA3937_RS03640at 803.444 kb on + strand, within DDA3937_RS03640at 803.444 kb on + strand, within DDA3937_RS03640at 803.656 kb on + strand, within DDA3937_RS03640at 803.705 kb on + strand, within DDA3937_RS03640at 803.705 kb on + strand, within DDA3937_RS03640at 803.705 kb on + strand, within DDA3937_RS03640at 803.706 kb on - strandat 803.706 kb on - strand, within DDA3937_RS03640at 803.706 kb on - strand, within DDA3937_RS03640at 803.903 kb on + strand, within DDA3937_RS03640at 803.903 kb on + strand, within DDA3937_RS03640at 803.904 kb on - strand, within DDA3937_RS03640at 803.904 kb on - strand, within DDA3937_RS03640at 804.075 kb on + strand, within DDA3937_RS03640at 804.076 kb on - strand, within DDA3937_RS03640at 804.076 kb on - strand, within DDA3937_RS03640

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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800,789 + DDA3937_RS03630 0.21 -1.9
800,790 - DDA3937_RS03630 0.21 +1.3
800,794 - DDA3937_RS03630 0.21 -1.4
800,794 - DDA3937_RS03630 0.21 +0.3
800,888 - DDA3937_RS03630 0.33 -1.6
800,898 - DDA3937_RS03630 0.34 +0.2
801,061 + DDA3937_RS03630 0.54 +0.4
801,062 - DDA3937_RS03630 0.54 -0.3
801,175 + DDA3937_RS03630 0.68 -1.0
801,175 + DDA3937_RS03630 0.68 +1.6
801,176 - DDA3937_RS03630 0.68 -0.9
801,176 - DDA3937_RS03630 0.68 +2.0
801,187 + DDA3937_RS03630 0.69 -2.1
801,187 + DDA3937_RS03630 0.69 +0.8
801,187 + DDA3937_RS03630 0.69 -0.8
801,188 - DDA3937_RS03630 0.69 -1.2
801,188 - DDA3937_RS03630 0.69 -2.7
801,188 - DDA3937_RS03630 0.69 -0.6
801,188 - DDA3937_RS03630 0.69 -0.0
801,189 + DDA3937_RS03630 0.69 -1.1
801,189 + DDA3937_RS03630 0.69 -1.3
801,189 + DDA3937_RS03630 0.69 +2.2
801,189 + DDA3937_RS03630 0.69 -1.6
801,190 - +0.6
801,190 - DDA3937_RS03630 0.69 -1.4
801,211 + DDA3937_RS03630 0.72 +0.7
801,276 + DDA3937_RS03630 0.80 +0.6
801,325 + DDA3937_RS03630 0.86 +1.9
801,388 + +1.2
801,492 + -0.5
801,492 + +0.1
801,493 - -1.3
801,625 + +1.2
801,625 + +1.3
801,626 - -2.4
801,649 + +1.0
801,652 - -2.0
801,652 - +1.5
801,652 - -1.9
801,652 - -2.6
801,708 + -0.0
801,709 - +1.6
801,728 + +0.4
801,728 + +0.3
801,728 + -1.9
801,729 - -1.7
801,729 - -1.9
801,731 + -3.1
801,742 + +1.6
801,742 + +1.1
801,742 + -0.0
801,742 + +2.0
801,742 + -0.4
801,742 + -1.1
801,742 + -0.4
801,742 + -3.4
801,743 - +1.6
801,743 - -1.4
801,743 - +1.6
801,743 - -2.4
801,743 - -0.9
801,743 - -2.1
801,743 - -1.4
801,743 - -0.0
801,743 - -2.4
801,744 + +0.9
801,745 - +0.3
801,745 - +1.6
801,841 + +3.7
802,009 + DDA3937_RS03635 0.22 +0.1
802,009 + DDA3937_RS03635 0.22 +0.4
802,285 + DDA3937_RS03635 0.42 +2.0
802,285 + DDA3937_RS03635 0.42 +2.5
802,285 + DDA3937_RS03635 0.42 +0.7
802,285 + DDA3937_RS03635 0.42 +0.2
802,286 - DDA3937_RS03635 0.42 +0.3
802,286 - DDA3937_RS03635 0.42 +0.9
802,286 - DDA3937_RS03635 0.42 +0.2
802,286 - DDA3937_RS03635 0.42 -1.3
802,286 - DDA3937_RS03635 0.42 -0.9
802,330 + DDA3937_RS03635 0.45 -1.9
802,331 - DDA3937_RS03635 0.45 -1.7
802,331 - DDA3937_RS03635 0.45 -1.2
802,331 - DDA3937_RS03635 0.45 +3.9
802,331 - DDA3937_RS03635 0.45 +0.2
802,508 + DDA3937_RS03635 0.58 +0.1
802,508 + DDA3937_RS03635 0.58 -1.4
802,509 - DDA3937_RS03635 0.58 +1.3
802,570 + DDA3937_RS03635 0.63 -0.0
802,571 - DDA3937_RS03635 0.63 +1.3
802,591 + DDA3937_RS03635 0.64 +0.1
802,592 - DDA3937_RS03635 0.64 -1.8
802,592 - DDA3937_RS03635 0.64 +0.4
802,625 - DDA3937_RS03635 0.67 +2.1
802,625 - DDA3937_RS03635 0.67 +1.4
802,625 - DDA3937_RS03635 0.67 +2.1
802,638 + DDA3937_RS03635 0.68 -1.6
802,638 + DDA3937_RS03635 0.68 +2.2
802,639 - DDA3937_RS03635 0.68 -0.6
802,642 + DDA3937_RS03635 0.68 -1.4
802,764 - DDA3937_RS03635 0.77 -2.1
802,764 - DDA3937_RS03635 0.77 -0.5
802,825 + DDA3937_RS03635 0.81 +0.1
802,870 + +0.6
802,871 - DDA3937_RS03635 0.85 -1.0
802,871 - DDA3937_RS03635 0.85 -1.5
802,871 - DDA3937_RS03635 0.85 +1.2
802,871 - DDA3937_RS03635 0.85 +0.6
802,871 - DDA3937_RS03635 0.85 -2.4
802,873 + DDA3937_RS03635 0.85 -0.8
802,873 + DDA3937_RS03635 0.85 +0.9
802,873 + DDA3937_RS03635 0.85 -1.4
802,874 - DDA3937_RS03635 0.85 +0.5
802,874 - DDA3937_RS03635 0.85 +0.2
802,874 - DDA3937_RS03635 0.85 +1.4
802,874 - DDA3937_RS03635 0.85 +0.6
802,938 + DDA3937_RS03635 0.90 +1.0
802,939 - DDA3937_RS03635 0.90 -1.1
802,997 - -3.0
802,997 - -0.4
803,103 - +0.2
803,103 - -2.5
803,306 - DDA3937_RS03640 0.19 +1.2
803,426 - DDA3937_RS03640 0.29 +0.8
803,426 - DDA3937_RS03640 0.29 -1.3
803,426 - DDA3937_RS03640 0.29 -1.8
803,444 + DDA3937_RS03640 0.31 +2.6
803,444 + DDA3937_RS03640 0.31 -0.4
803,656 + DDA3937_RS03640 0.49 -0.8
803,705 + DDA3937_RS03640 0.53 -2.0
803,705 + DDA3937_RS03640 0.53 -1.4
803,705 + DDA3937_RS03640 0.53 -0.1
803,706 - +0.6
803,706 - DDA3937_RS03640 0.53 -1.5
803,706 - DDA3937_RS03640 0.53 -1.1
803,903 + DDA3937_RS03640 0.70 -1.5
803,903 + DDA3937_RS03640 0.70 +0.3
803,904 - DDA3937_RS03640 0.70 +0.6
803,904 - DDA3937_RS03640 0.70 -1.0
804,075 + DDA3937_RS03640 0.85 +0.8
804,076 - DDA3937_RS03640 0.85 -1.0
804,076 - DDA3937_RS03640 0.85 -3.1

Or see this region's nucleotide sequence