Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03545

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03540 and DDA3937_RS03545 are separated by 453 nucleotidesDDA3937_RS03545 and DDA3937_RS03550 are separated by 178 nucleotides DDA3937_RS03540: DDA3937_RS03540 - MFS transporter, at 778,585 to 780,111 _RS03540 DDA3937_RS03545: DDA3937_RS03545 - helix-turn-helix transcriptional regulator, at 780,565 to 780,774 _RS03545 DDA3937_RS03550: DDA3937_RS03550 - fructuronate reductase, at 780,953 to 782,449 _RS03550 Position (kb) 780 781Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 779.571 kb on - strand, within DDA3937_RS03540at 779.600 kb on + strand, within DDA3937_RS03540at 779.600 kb on + strand, within DDA3937_RS03540at 779.601 kb on - strand, within DDA3937_RS03540at 779.601 kb on - strand, within DDA3937_RS03540at 779.750 kb on + strand, within DDA3937_RS03540at 779.750 kb on + strand, within DDA3937_RS03540at 779.751 kb on - strand, within DDA3937_RS03540at 779.771 kb on + strand, within DDA3937_RS03540at 779.771 kb on + strand, within DDA3937_RS03540at 779.771 kb on + strand, within DDA3937_RS03540at 779.771 kb on + strand, within DDA3937_RS03540at 779.771 kb on + strand, within DDA3937_RS03540at 779.771 kb on + strand, within DDA3937_RS03540at 779.771 kb on + strand, within DDA3937_RS03540at 779.771 kb on + strand, within DDA3937_RS03540at 779.771 kb on + strand, within DDA3937_RS03540at 779.772 kb on - strand, within DDA3937_RS03540at 779.772 kb on - strand, within DDA3937_RS03540at 779.772 kb on - strand, within DDA3937_RS03540at 779.772 kb on - strand, within DDA3937_RS03540at 779.772 kb on - strand, within DDA3937_RS03540at 779.772 kb on - strand, within DDA3937_RS03540at 779.772 kb on - strand, within DDA3937_RS03540at 779.772 kb on - strand, within DDA3937_RS03540at 779.772 kb on - strand, within DDA3937_RS03540at 779.772 kb on - strand, within DDA3937_RS03540at 779.783 kb on + strand, within DDA3937_RS03540at 779.783 kb on + strand, within DDA3937_RS03540at 779.783 kb on + strand, within DDA3937_RS03540at 779.783 kb on + strand, within DDA3937_RS03540at 779.784 kb on - strand, within DDA3937_RS03540at 779.784 kb on - strand, within DDA3937_RS03540at 779.784 kb on - strand, within DDA3937_RS03540at 779.784 kb on - strand, within DDA3937_RS03540at 779.784 kb on - strand, within DDA3937_RS03540at 779.784 kb on - strand, within DDA3937_RS03540at 779.784 kb on - strand, within DDA3937_RS03540at 779.784 kb on - strand, within DDA3937_RS03540at 779.786 kb on + strand, within DDA3937_RS03540at 779.787 kb on - strand, within DDA3937_RS03540at 779.787 kb on - strand, within DDA3937_RS03540at 779.787 kb on - strand, within DDA3937_RS03540at 779.897 kb on + strand, within DDA3937_RS03540at 779.898 kb on - strand, within DDA3937_RS03540at 779.915 kb on + strand, within DDA3937_RS03540at 779.915 kb on + strand, within DDA3937_RS03540at 779.915 kb on + strand, within DDA3937_RS03540at 779.915 kb on + strand, within DDA3937_RS03540at 779.915 kb on + strand, within DDA3937_RS03540at 779.916 kb on - strand, within DDA3937_RS03540at 779.916 kb on - strand, within DDA3937_RS03540at 779.916 kb on - strand, within DDA3937_RS03540at 779.916 kb on - strand, within DDA3937_RS03540at 779.916 kb on - strand, within DDA3937_RS03540at 779.916 kb on - strand, within DDA3937_RS03540at 779.953 kb on - strand, within DDA3937_RS03540at 780.008 kb on + strandat 780.008 kb on + strandat 780.008 kb on + strandat 780.008 kb on + strandat 780.009 kb on - strandat 780.009 kb on - strandat 780.009 kb on - strandat 780.009 kb on - strandat 780.009 kb on - strandat 780.009 kb on - strandat 780.009 kb on - strandat 780.009 kb on - strandat 780.014 kb on + strandat 780.015 kb on - strandat 780.015 kb on - strandat 780.015 kb on - strandat 780.033 kb on + strandat 780.033 kb on + strandat 780.033 kb on + strandat 780.034 kb on - strandat 780.034 kb on - strandat 780.056 kb on - strandat 780.105 kb on + strandat 780.106 kb on - strandat 780.106 kb on - strandat 780.200 kb on + strandat 780.200 kb on + strandat 780.200 kb on + strandat 780.201 kb on - strandat 780.201 kb on - strandat 780.226 kb on - strandat 780.226 kb on - strandat 780.228 kb on + strandat 780.229 kb on - strandat 780.256 kb on - strandat 780.280 kb on + strandat 780.330 kb on + strandat 780.387 kb on + strandat 780.387 kb on + strandat 780.387 kb on + strandat 780.388 kb on - strandat 780.429 kb on + strandat 780.429 kb on + strandat 780.430 kb on - strandat 780.430 kb on - strandat 780.430 kb on - strandat 780.502 kb on + strandat 780.502 kb on + strandat 780.524 kb on + strandat 780.524 kb on + strandat 780.524 kb on + strandat 780.524 kb on + strandat 780.524 kb on + strandat 780.524 kb on + strandat 780.524 kb on + strandat 780.525 kb on - strandat 780.525 kb on - strandat 780.554 kb on + strandat 780.554 kb on + strandat 780.702 kb on + strand, within DDA3937_RS03545at 780.702 kb on + strand, within DDA3937_RS03545at 780.702 kb on + strand, within DDA3937_RS03545at 780.703 kb on - strand, within DDA3937_RS03545at 780.703 kb on - strand, within DDA3937_RS03545at 780.703 kb on - strand, within DDA3937_RS03545at 780.716 kb on + strand, within DDA3937_RS03545at 780.757 kb on + strandat 780.757 kb on + strandat 780.757 kb on + strandat 780.758 kb on - strandat 780.807 kb on - strandat 780.909 kb on + strandat 780.909 kb on + strandat 780.910 kb on - strandat 780.910 kb on - strandat 781.012 kb on - strandat 781.118 kb on - strand, within DDA3937_RS03550at 781.200 kb on + strand, within DDA3937_RS03550at 781.200 kb on + strand, within DDA3937_RS03550at 781.364 kb on + strand, within DDA3937_RS03550at 781.365 kb on - strand, within DDA3937_RS03550at 781.378 kb on - strand, within DDA3937_RS03550at 781.471 kb on + strand, within DDA3937_RS03550at 781.477 kb on + strand, within DDA3937_RS03550at 781.477 kb on + strand, within DDA3937_RS03550at 781.477 kb on + strand, within DDA3937_RS03550at 781.477 kb on + strand, within DDA3937_RS03550at 781.478 kb on - strand, within DDA3937_RS03550at 781.478 kb on - strand, within DDA3937_RS03550at 781.478 kb on - strand, within DDA3937_RS03550at 781.478 kb on - strand, within DDA3937_RS03550at 781.483 kb on + strand, within DDA3937_RS03550at 781.483 kb on + strand, within DDA3937_RS03550at 781.483 kb on + strand, within DDA3937_RS03550at 781.483 kb on + strand, within DDA3937_RS03550at 781.483 kb on + strand, within DDA3937_RS03550at 781.483 kb on + strand, within DDA3937_RS03550at 781.483 kb on + strand, within DDA3937_RS03550at 781.483 kb on + strand, within DDA3937_RS03550at 781.484 kb on - strand, within DDA3937_RS03550at 781.484 kb on - strandat 781.484 kb on - strand, within DDA3937_RS03550at 781.492 kb on - strand, within DDA3937_RS03550at 781.504 kb on - strand, within DDA3937_RS03550at 781.512 kb on + strand, within DDA3937_RS03550at 781.512 kb on + strand, within DDA3937_RS03550at 781.513 kb on - strand, within DDA3937_RS03550at 781.538 kb on - strand, within DDA3937_RS03550at 781.630 kb on + strand, within DDA3937_RS03550at 781.630 kb on + strand, within DDA3937_RS03550at 781.631 kb on - strand, within DDA3937_RS03550at 781.631 kb on - strand, within DDA3937_RS03550at 781.631 kb on - strandat 781.637 kb on + strand, within DDA3937_RS03550at 781.637 kb on + strand, within DDA3937_RS03550at 781.637 kb on + strand, within DDA3937_RS03550at 781.637 kb on + strand, within DDA3937_RS03550at 781.637 kb on + strand, within DDA3937_RS03550at 781.638 kb on - strand, within DDA3937_RS03550at 781.638 kb on - strand, within DDA3937_RS03550at 781.638 kb on - strandat 781.638 kb on - strand, within DDA3937_RS03550at 781.638 kb on - strand, within DDA3937_RS03550at 781.638 kb on - strand, within DDA3937_RS03550at 781.638 kb on - strand, within DDA3937_RS03550

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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779,571 - DDA3937_RS03540 0.65 -2.3
779,600 + DDA3937_RS03540 0.66 -1.6
779,600 + DDA3937_RS03540 0.66 +0.9
779,601 - DDA3937_RS03540 0.67 +1.6
779,601 - DDA3937_RS03540 0.67 -1.2
779,750 + DDA3937_RS03540 0.76 -1.1
779,750 + DDA3937_RS03540 0.76 -1.9
779,751 - DDA3937_RS03540 0.76 -1.0
779,771 + DDA3937_RS03540 0.78 -0.2
779,771 + DDA3937_RS03540 0.78 -1.0
779,771 + DDA3937_RS03540 0.78 -0.4
779,771 + DDA3937_RS03540 0.78 -0.2
779,771 + DDA3937_RS03540 0.78 -0.1
779,771 + DDA3937_RS03540 0.78 +0.5
779,771 + DDA3937_RS03540 0.78 +1.5
779,771 + DDA3937_RS03540 0.78 +1.8
779,771 + DDA3937_RS03540 0.78 -0.4
779,772 - DDA3937_RS03540 0.78 +0.9
779,772 - DDA3937_RS03540 0.78 +1.4
779,772 - DDA3937_RS03540 0.78 -2.3
779,772 - DDA3937_RS03540 0.78 -3.7
779,772 - DDA3937_RS03540 0.78 -0.5
779,772 - DDA3937_RS03540 0.78 -0.0
779,772 - DDA3937_RS03540 0.78 +0.7
779,772 - DDA3937_RS03540 0.78 +0.6
779,772 - DDA3937_RS03540 0.78 -2.4
779,772 - DDA3937_RS03540 0.78 +1.1
779,783 + DDA3937_RS03540 0.78 +0.2
779,783 + DDA3937_RS03540 0.78 -2.4
779,783 + DDA3937_RS03540 0.78 -0.6
779,783 + DDA3937_RS03540 0.78 -2.3
779,784 - DDA3937_RS03540 0.79 -0.9
779,784 - DDA3937_RS03540 0.79 -2.4
779,784 - DDA3937_RS03540 0.79 +0.5
779,784 - DDA3937_RS03540 0.79 -1.8
779,784 - DDA3937_RS03540 0.79 -1.4
779,784 - DDA3937_RS03540 0.79 +0.6
779,784 - DDA3937_RS03540 0.79 +0.2
779,784 - DDA3937_RS03540 0.79 +1.1
779,786 + DDA3937_RS03540 0.79 -1.8
779,787 - DDA3937_RS03540 0.79 -2.6
779,787 - DDA3937_RS03540 0.79 -0.7
779,787 - DDA3937_RS03540 0.79 -1.6
779,897 + DDA3937_RS03540 0.86 -0.9
779,898 - DDA3937_RS03540 0.86 -2.1
779,915 + DDA3937_RS03540 0.87 -2.6
779,915 + DDA3937_RS03540 0.87 +1.5
779,915 + DDA3937_RS03540 0.87 +0.0
779,915 + DDA3937_RS03540 0.87 +0.4
779,915 + DDA3937_RS03540 0.87 +0.9
779,916 - DDA3937_RS03540 0.87 +2.5
779,916 - DDA3937_RS03540 0.87 -1.4
779,916 - DDA3937_RS03540 0.87 -0.0
779,916 - DDA3937_RS03540 0.87 -1.0
779,916 - DDA3937_RS03540 0.87 +2.4
779,916 - DDA3937_RS03540 0.87 +0.6
779,953 - DDA3937_RS03540 0.90 -1.3
780,008 + +0.1
780,008 + -2.2
780,008 + +1.0
780,008 + -1.0
780,009 - -1.9
780,009 - +1.1
780,009 - -1.3
780,009 - +0.6
780,009 - +0.0
780,009 - +2.0
780,009 - -1.0
780,009 - -2.1
780,014 + -3.2
780,015 - -0.4
780,015 - -2.5
780,015 - -0.8
780,033 + -1.6
780,033 + +2.6
780,033 + +2.4
780,034 - -2.8
780,034 - +0.6
780,056 - -1.5
780,105 + -2.3
780,106 - -1.9
780,106 - +1.6
780,200 + -0.0
780,200 + -0.9
780,200 + +1.2
780,201 - +0.6
780,201 - -0.4
780,226 - -0.5
780,226 - -2.2
780,228 + -2.8
780,229 - -0.5
780,256 - +0.4
780,280 + +0.3
780,330 + +1.2
780,387 + -1.6
780,387 + -0.4
780,387 + -1.4
780,388 - -3.5
780,429 + +0.1
780,429 + -0.8
780,430 - +0.6
780,430 - +0.2
780,430 - +1.4
780,502 + +0.6
780,502 + -1.1
780,524 + -1.0
780,524 + -2.2
780,524 + -1.4
780,524 + -0.6
780,524 + -2.1
780,524 + +1.9
780,524 + -1.6
780,525 - +1.3
780,525 - +0.6
780,554 + -4.4
780,554 + -0.2
780,702 + DDA3937_RS03545 0.65 -0.4
780,702 + DDA3937_RS03545 0.65 -1.9
780,702 + DDA3937_RS03545 0.65 -0.5
780,703 - DDA3937_RS03545 0.66 -1.8
780,703 - DDA3937_RS03545 0.66 -0.4
780,703 - DDA3937_RS03545 0.66 -1.0
780,716 + DDA3937_RS03545 0.72 -0.8
780,757 + -0.0
780,757 + -0.3
780,757 + -1.8
780,758 - -0.1
780,807 - +0.6
780,909 + -0.4
780,909 + +2.5
780,910 - -2.3
780,910 - -2.3
781,012 - +0.3
781,118 - DDA3937_RS03550 0.11 -0.9
781,200 + DDA3937_RS03550 0.16 +1.0
781,200 + DDA3937_RS03550 0.16 +0.5
781,364 + DDA3937_RS03550 0.27 +1.1
781,365 - DDA3937_RS03550 0.28 -1.2
781,378 - DDA3937_RS03550 0.28 +1.9
781,471 + DDA3937_RS03550 0.35 -0.0
781,477 + DDA3937_RS03550 0.35 +0.0
781,477 + DDA3937_RS03550 0.35 +0.9
781,477 + DDA3937_RS03550 0.35 +2.9
781,477 + DDA3937_RS03550 0.35 -1.0
781,478 - DDA3937_RS03550 0.35 +1.7
781,478 - DDA3937_RS03550 0.35 -1.5
781,478 - DDA3937_RS03550 0.35 -2.3
781,478 - DDA3937_RS03550 0.35 +1.4
781,483 + DDA3937_RS03550 0.35 -2.3
781,483 + DDA3937_RS03550 0.35 -1.5
781,483 + DDA3937_RS03550 0.35 -2.6
781,483 + DDA3937_RS03550 0.35 +2.6
781,483 + DDA3937_RS03550 0.35 +0.3
781,483 + DDA3937_RS03550 0.35 -1.0
781,483 + DDA3937_RS03550 0.35 +1.5
781,483 + DDA3937_RS03550 0.35 +0.1
781,484 - DDA3937_RS03550 0.35 -0.4
781,484 - -0.8
781,484 - DDA3937_RS03550 0.35 -2.8
781,492 - DDA3937_RS03550 0.36 -2.2
781,504 - DDA3937_RS03550 0.37 -1.0
781,512 + DDA3937_RS03550 0.37 +1.3
781,512 + DDA3937_RS03550 0.37 +0.2
781,513 - DDA3937_RS03550 0.37 -0.8
781,538 - DDA3937_RS03550 0.39 +2.6
781,630 + DDA3937_RS03550 0.45 -1.7
781,630 + DDA3937_RS03550 0.45 -2.9
781,631 - DDA3937_RS03550 0.45 -3.3
781,631 - DDA3937_RS03550 0.45 -1.0
781,631 - +3.3
781,637 + DDA3937_RS03550 0.46 -1.4
781,637 + DDA3937_RS03550 0.46 -1.8
781,637 + DDA3937_RS03550 0.46 -1.6
781,637 + DDA3937_RS03550 0.46 -1.9
781,637 + DDA3937_RS03550 0.46 +0.6
781,638 - DDA3937_RS03550 0.46 -1.0
781,638 - DDA3937_RS03550 0.46 -1.7
781,638 - -0.8
781,638 - DDA3937_RS03550 0.46 -1.4
781,638 - DDA3937_RS03550 0.46 +0.1
781,638 - DDA3937_RS03550 0.46 +0.2
781,638 - DDA3937_RS03550 0.46 +0.7

Or see this region's nucleotide sequence