Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03235 and DDA3937_RS03240 are separated by 326 nucleotides DDA3937_RS03240 and DDA3937_RS03245 are separated by 671 nucleotides
DDA3937_RS03235: DDA3937_RS03235 - acetolactate synthase AlsS, at 705,480 to 707,159
_RS03235
DDA3937_RS03240: DDA3937_RS03240 - lactaldehyde reductase, at 707,486 to 708,637
_RS03240
DDA3937_RS03245: DDA3937_RS03245 - glycine cleavage system aminomethyltransferase GcvT, at 709,309 to 710,409
_RS03245
Position (kb) 707
708
709 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 706.634 kb on + strand, within DDA3937_RS03235 at 706.635 kb on - strand, within DDA3937_RS03235 at 706.643 kb on + strand, within DDA3937_RS03235 at 706.644 kb on - strand, within DDA3937_RS03235 at 706.644 kb on - strand, within DDA3937_RS03235 at 706.644 kb on - strand, within DDA3937_RS03235 at 706.695 kb on + strand, within DDA3937_RS03235 at 706.908 kb on + strand, within DDA3937_RS03235 at 706.909 kb on - strand, within DDA3937_RS03235 at 706.982 kb on + strand, within DDA3937_RS03235 at 706.982 kb on + strand, within DDA3937_RS03235 at 707.009 kb on + strand at 707.121 kb on + strand at 707.121 kb on + strand at 707.122 kb on - strand at 707.163 kb on + strand at 707.163 kb on + strand at 707.164 kb on - strand at 707.164 kb on - strand at 707.166 kb on + strand at 707.167 kb on - strand at 707.184 kb on + strand at 707.185 kb on - strand at 707.185 kb on - strand at 707.192 kb on + strand at 707.226 kb on + strand at 707.244 kb on - strand at 707.244 kb on - strand at 707.254 kb on - strand at 707.263 kb on - strand at 707.263 kb on - strand at 707.328 kb on + strand at 707.328 kb on + strand at 707.328 kb on + strand at 707.328 kb on + strand at 707.328 kb on + strand at 707.328 kb on + strand at 707.328 kb on + strand at 707.329 kb on - strand at 707.329 kb on - strand at 707.329 kb on - strand at 707.329 kb on - strand at 707.331 kb on + strand at 707.454 kb on + strand at 707.460 kb on + strand at 707.460 kb on + strand at 707.461 kb on - strand at 707.461 kb on - strand at 707.461 kb on - strand at 707.464 kb on + strand at 707.464 kb on + strand at 707.464 kb on + strand at 707.464 kb on + strand at 707.464 kb on + strand at 707.464 kb on + strand at 707.464 kb on + strand at 707.465 kb on - strand at 707.465 kb on - strand at 707.465 kb on - strand at 707.465 kb on - strand at 707.465 kb on - strand at 707.465 kb on - strand at 707.490 kb on + strand at 707.490 kb on + strand at 707.490 kb on + strand at 707.491 kb on - strand at 707.491 kb on - strand at 707.491 kb on - strand at 707.491 kb on - strand at 707.502 kb on + strand at 707.502 kb on + strand at 707.502 kb on + strand at 707.503 kb on - strand at 707.503 kb on - strand at 707.658 kb on - strand, within DDA3937_RS03240 at 707.714 kb on + strand, within DDA3937_RS03240 at 707.714 kb on + strand at 707.757 kb on + strand, within DDA3937_RS03240 at 707.757 kb on + strand, within DDA3937_RS03240 at 707.821 kb on + strand, within DDA3937_RS03240 at 707.822 kb on - strand, within DDA3937_RS03240 at 707.823 kb on + strand, within DDA3937_RS03240 at 707.823 kb on + strand, within DDA3937_RS03240 at 707.823 kb on + strand, within DDA3937_RS03240 at 707.823 kb on + strand, within DDA3937_RS03240 at 707.823 kb on + strand, within DDA3937_RS03240 at 707.824 kb on - strand, within DDA3937_RS03240 at 707.824 kb on - strand, within DDA3937_RS03240 at 707.824 kb on - strand, within DDA3937_RS03240 at 707.824 kb on - strand, within DDA3937_RS03240 at 707.824 kb on - strand, within DDA3937_RS03240 at 707.824 kb on - strand, within DDA3937_RS03240 at 707.824 kb on - strand, within DDA3937_RS03240 at 707.824 kb on - strand, within DDA3937_RS03240 at 707.896 kb on + strand at 707.896 kb on + strand, within DDA3937_RS03240 at 707.897 kb on - strand, within DDA3937_RS03240 at 707.897 kb on - strand, within DDA3937_RS03240 at 707.898 kb on + strand, within DDA3937_RS03240 at 707.898 kb on + strand, within DDA3937_RS03240 at 707.898 kb on + strand, within DDA3937_RS03240 at 707.898 kb on + strand, within DDA3937_RS03240 at 707.898 kb on + strand, within DDA3937_RS03240 at 707.898 kb on + strand, within DDA3937_RS03240 at 707.898 kb on + strand, within DDA3937_RS03240 at 707.899 kb on - strand, within DDA3937_RS03240 at 707.899 kb on - strand, within DDA3937_RS03240 at 707.899 kb on - strand, within DDA3937_RS03240 at 707.899 kb on - strand, within DDA3937_RS03240 at 707.899 kb on - strand, within DDA3937_RS03240 at 707.899 kb on - strand, within DDA3937_RS03240 at 708.003 kb on - strand, within DDA3937_RS03240 at 708.026 kb on - strand, within DDA3937_RS03240 at 708.131 kb on - strand, within DDA3937_RS03240 at 708.186 kb on + strand, within DDA3937_RS03240 at 708.186 kb on + strand, within DDA3937_RS03240 at 708.186 kb on + strand, within DDA3937_RS03240 at 708.186 kb on + strand, within DDA3937_RS03240 at 708.186 kb on + strand, within DDA3937_RS03240 at 708.186 kb on + strand, within DDA3937_RS03240 at 708.187 kb on - strand, within DDA3937_RS03240 at 708.187 kb on - strand, within DDA3937_RS03240 at 708.187 kb on - strand, within DDA3937_RS03240 at 708.187 kb on - strand, within DDA3937_RS03240 at 708.187 kb on - strand, within DDA3937_RS03240 at 708.187 kb on - strand, within DDA3937_RS03240 at 708.187 kb on - strand, within DDA3937_RS03240 at 708.187 kb on - strand, within DDA3937_RS03240 at 708.187 kb on - strand, within DDA3937_RS03240 at 708.187 kb on - strand, within DDA3937_RS03240 at 708.187 kb on - strand, within DDA3937_RS03240 at 708.369 kb on + strand, within DDA3937_RS03240 at 708.447 kb on + strand, within DDA3937_RS03240 at 708.447 kb on + strand, within DDA3937_RS03240 at 708.447 kb on + strand, within DDA3937_RS03240 at 708.447 kb on + strand, within DDA3937_RS03240 at 708.447 kb on + strand, within DDA3937_RS03240 at 708.447 kb on + strand, within DDA3937_RS03240 at 708.448 kb on - strand, within DDA3937_RS03240 at 708.448 kb on - strand, within DDA3937_RS03240 at 708.448 kb on - strand, within DDA3937_RS03240 at 708.448 kb on - strand, within DDA3937_RS03240 at 708.448 kb on - strand, within DDA3937_RS03240 at 708.448 kb on - strand, within DDA3937_RS03240 at 708.448 kb on - strand, within DDA3937_RS03240 at 708.448 kb on - strand, within DDA3937_RS03240 at 708.448 kb on - strand, within DDA3937_RS03240 at 708.448 kb on - strand, within DDA3937_RS03240 at 708.456 kb on + strand, within DDA3937_RS03240 at 708.456 kb on + strand, within DDA3937_RS03240 at 708.456 kb on + strand, within DDA3937_RS03240 at 708.457 kb on - strand, within DDA3937_RS03240 at 708.457 kb on - strand, within DDA3937_RS03240 at 708.493 kb on + strand, within DDA3937_RS03240 at 708.508 kb on - strand, within DDA3937_RS03240 at 708.604 kb on - strand at 708.604 kb on - strand at 708.604 kb on - strand at 708.620 kb on + strand at 708.621 kb on - strand at 708.713 kb on + strand at 708.713 kb on + strand at 708.719 kb on - strand at 708.739 kb on - strand at 708.744 kb on - strand at 708.789 kb on + strand at 708.789 kb on + strand at 708.889 kb on - strand at 708.889 kb on - strand at 708.889 kb on - strand at 708.889 kb on - strand at 708.976 kb on + strand at 708.977 kb on - strand at 709.116 kb on - strand at 709.116 kb on - strand at 709.116 kb on - strand at 709.183 kb on - strand at 709.186 kb on + strand at 709.190 kb on + strand at 709.191 kb on - strand at 709.196 kb on + strand at 709.196 kb on + strand at 709.196 kb on + strand at 709.234 kb on - strand at 709.297 kb on - strand at 709.297 kb on - strand at 709.297 kb on - strand at 709.297 kb on - strand at 709.330 kb on + strand at 709.427 kb on + strand, within DDA3937_RS03245 at 709.427 kb on + strand, within DDA3937_RS03245 at 709.428 kb on - strand, within DDA3937_RS03245 at 709.428 kb on - strand, within DDA3937_RS03245 at 709.428 kb on - strand, within DDA3937_RS03245 at 709.561 kb on + strand, within DDA3937_RS03245 at 709.561 kb on + strand at 709.561 kb on + strand, within DDA3937_RS03245 at 709.561 kb on + strand, within DDA3937_RS03245 at 709.561 kb on + strand at 709.561 kb on + strand, within DDA3937_RS03245 at 709.562 kb on - strand, within DDA3937_RS03245 at 709.562 kb on - strand, within DDA3937_RS03245 at 709.562 kb on - strand, within DDA3937_RS03245 at 709.562 kb on - strand, within DDA3937_RS03245 at 709.562 kb on - strand, within DDA3937_RS03245 at 709.562 kb on - strand, within DDA3937_RS03245 at 709.562 kb on - strand, within DDA3937_RS03245 at 709.562 kb on - strand, within DDA3937_RS03245 at 709.564 kb on - strand, within DDA3937_RS03245 at 709.630 kb on + strand, within DDA3937_RS03245 at 709.631 kb on - strand, within DDA3937_RS03245 at 709.631 kb on - strand, within DDA3937_RS03245 at 709.631 kb on - strand, within DDA3937_RS03245
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 706,634 + DDA3937_RS03235 0.69 +1.2 706,635 - DDA3937_RS03235 0.69 -2.4 706,643 + DDA3937_RS03235 0.69 -1.2 706,644 - DDA3937_RS03235 0.69 +0.3 706,644 - DDA3937_RS03235 0.69 -1.0 706,644 - DDA3937_RS03235 0.69 +1.5 706,695 + DDA3937_RS03235 0.72 -0.5 706,908 + DDA3937_RS03235 0.85 +0.9 706,909 - DDA3937_RS03235 0.85 -2.2 706,982 + DDA3937_RS03235 0.89 -0.3 706,982 + DDA3937_RS03235 0.89 +2.4 707,009 + +0.0 707,121 + -0.6 707,121 + -2.2 707,122 - -1.6 707,163 + -3.7 707,163 + +0.6 707,164 - -2.4 707,164 - +0.4 707,166 + +0.0 707,167 - +0.2 707,184 + -2.3 707,185 - +0.6 707,185 - +1.4 707,192 + +0.3 707,226 + -1.5 707,244 - -2.2 707,244 - -0.6 707,254 - -0.3 707,263 - +0.1 707,263 - -0.9 707,328 + -2.8 707,328 + -0.3 707,328 + +0.5 707,328 + -2.3 707,328 + -0.5 707,328 + +0.7 707,328 + +2.2 707,329 - +0.2 707,329 - -2.3 707,329 - -3.3 707,329 - -0.2 707,331 + -1.5 707,454 + +0.2 707,460 + -0.7 707,460 + +3.5 707,461 - +3.3 707,461 - -1.2 707,461 - +2.3 707,464 + -1.0 707,464 + -0.5 707,464 + +0.9 707,464 + -4.1 707,464 + -2.0 707,464 + +3.3 707,464 + -1.0 707,465 - +1.4 707,465 - +1.0 707,465 - +0.6 707,465 - +0.3 707,465 - +2.5 707,465 - -1.0 707,490 + +0.3 707,490 + -2.0 707,490 + -2.1 707,491 - -2.4 707,491 - -0.6 707,491 - -2.9 707,491 - +2.4 707,502 + -2.4 707,502 + +1.0 707,502 + -2.6 707,503 - +1.3 707,503 - +0.1 707,658 - DDA3937_RS03240 0.15 +0.6 707,714 + DDA3937_RS03240 0.20 -0.7 707,714 + -1.0 707,757 + DDA3937_RS03240 0.24 +0.4 707,757 + DDA3937_RS03240 0.24 +1.1 707,821 + DDA3937_RS03240 0.29 +1.2 707,822 - DDA3937_RS03240 0.29 -1.2 707,823 + DDA3937_RS03240 0.29 +1.8 707,823 + DDA3937_RS03240 0.29 -0.9 707,823 + DDA3937_RS03240 0.29 -2.0 707,823 + DDA3937_RS03240 0.29 +4.2 707,823 + DDA3937_RS03240 0.29 +0.9 707,824 - DDA3937_RS03240 0.29 -3.5 707,824 - DDA3937_RS03240 0.29 +0.6 707,824 - DDA3937_RS03240 0.29 -1.4 707,824 - DDA3937_RS03240 0.29 -3.0 707,824 - DDA3937_RS03240 0.29 -5.2 707,824 - DDA3937_RS03240 0.29 -3.2 707,824 - DDA3937_RS03240 0.29 +0.1 707,824 - DDA3937_RS03240 0.29 +2.1 707,896 + +0.6 707,896 + DDA3937_RS03240 0.36 -3.2 707,897 - DDA3937_RS03240 0.36 +1.4 707,897 - DDA3937_RS03240 0.36 +0.1 707,898 + DDA3937_RS03240 0.36 -0.0 707,898 + DDA3937_RS03240 0.36 +1.1 707,898 + DDA3937_RS03240 0.36 -1.7 707,898 + DDA3937_RS03240 0.36 +0.0 707,898 + DDA3937_RS03240 0.36 +0.2 707,898 + DDA3937_RS03240 0.36 +1.2 707,898 + DDA3937_RS03240 0.36 -1.0 707,899 - DDA3937_RS03240 0.36 -1.9 707,899 - DDA3937_RS03240 0.36 +1.7 707,899 - DDA3937_RS03240 0.36 +0.2 707,899 - DDA3937_RS03240 0.36 +1.2 707,899 - DDA3937_RS03240 0.36 -0.9 707,899 - DDA3937_RS03240 0.36 -1.7 708,003 - DDA3937_RS03240 0.45 -2.5 708,026 - DDA3937_RS03240 0.47 -1.8 708,131 - DDA3937_RS03240 0.56 -1.7 708,186 + DDA3937_RS03240 0.61 -2.6 708,186 + DDA3937_RS03240 0.61 +0.6 708,186 + DDA3937_RS03240 0.61 -2.0 708,186 + DDA3937_RS03240 0.61 -1.7 708,186 + DDA3937_RS03240 0.61 +1.9 708,186 + DDA3937_RS03240 0.61 +1.1 708,187 - DDA3937_RS03240 0.61 -1.9 708,187 - DDA3937_RS03240 0.61 +0.2 708,187 - DDA3937_RS03240 0.61 +1.5 708,187 - DDA3937_RS03240 0.61 -1.9 708,187 - DDA3937_RS03240 0.61 -0.3 708,187 - DDA3937_RS03240 0.61 -0.7 708,187 - DDA3937_RS03240 0.61 +0.3 708,187 - DDA3937_RS03240 0.61 +0.6 708,187 - DDA3937_RS03240 0.61 +2.8 708,187 - DDA3937_RS03240 0.61 +1.2 708,187 - DDA3937_RS03240 0.61 +0.3 708,369 + DDA3937_RS03240 0.77 +3.1 708,447 + DDA3937_RS03240 0.83 +0.5 708,447 + DDA3937_RS03240 0.83 +2.6 708,447 + DDA3937_RS03240 0.83 +0.7 708,447 + DDA3937_RS03240 0.83 +0.4 708,447 + DDA3937_RS03240 0.83 -2.3 708,447 + DDA3937_RS03240 0.83 -1.6 708,448 - DDA3937_RS03240 0.84 +0.6 708,448 - DDA3937_RS03240 0.84 -1.4 708,448 - DDA3937_RS03240 0.84 -0.5 708,448 - DDA3937_RS03240 0.84 +0.3 708,448 - DDA3937_RS03240 0.84 -0.1 708,448 - DDA3937_RS03240 0.84 +0.7 708,448 - DDA3937_RS03240 0.84 +0.5 708,448 - DDA3937_RS03240 0.84 -1.0 708,448 - DDA3937_RS03240 0.84 +2.9 708,448 - DDA3937_RS03240 0.84 -2.5 708,456 + DDA3937_RS03240 0.84 -2.2 708,456 + DDA3937_RS03240 0.84 +1.5 708,456 + DDA3937_RS03240 0.84 +0.5 708,457 - DDA3937_RS03240 0.84 +0.1 708,457 - DDA3937_RS03240 0.84 +0.7 708,493 + DDA3937_RS03240 0.87 -1.0 708,508 - DDA3937_RS03240 0.89 +0.4 708,604 - -1.4 708,604 - -0.7 708,604 - +0.5 708,620 + -0.2 708,621 - +0.2 708,713 + -3.6 708,713 + -3.2 708,719 - +1.2 708,739 - -2.4 708,744 - +0.6 708,789 + +1.3 708,789 + -3.0 708,889 - -3.0 708,889 - -3.4 708,889 - -2.0 708,889 - +1.1 708,976 + -1.5 708,977 - -1.0 709,116 - -1.3 709,116 - +1.4 709,116 - +1.5 709,183 - +0.2 709,186 + +0.6 709,190 + -0.2 709,191 - -0.2 709,196 + +1.6 709,196 + -0.4 709,196 + -1.3 709,234 - -1.6 709,297 - -1.5 709,297 - -0.4 709,297 - -3.2 709,297 - +0.5 709,330 + -3.0 709,427 + DDA3937_RS03245 0.11 -2.1 709,427 + DDA3937_RS03245 0.11 +0.2 709,428 - DDA3937_RS03245 0.11 -0.4 709,428 - DDA3937_RS03245 0.11 -0.5 709,428 - DDA3937_RS03245 0.11 -1.5 709,561 + DDA3937_RS03245 0.23 +0.6 709,561 + -1.0 709,561 + DDA3937_RS03245 0.23 -0.4 709,561 + DDA3937_RS03245 0.23 +1.7 709,561 + +0.6 709,561 + DDA3937_RS03245 0.23 -2.3 709,562 - DDA3937_RS03245 0.23 +0.9 709,562 - DDA3937_RS03245 0.23 +1.2 709,562 - DDA3937_RS03245 0.23 +1.7 709,562 - DDA3937_RS03245 0.23 -1.7 709,562 - DDA3937_RS03245 0.23 +3.4 709,562 - DDA3937_RS03245 0.23 +2.4 709,562 - DDA3937_RS03245 0.23 -1.0 709,562 - DDA3937_RS03245 0.23 -1.2 709,564 - DDA3937_RS03245 0.23 -1.7 709,630 + DDA3937_RS03245 0.29 -0.8 709,631 - DDA3937_RS03245 0.29 -0.2 709,631 - DDA3937_RS03245 0.29 +1.7 709,631 - DDA3937_RS03245 0.29 -2.4
Or see this region's nucleotide sequence