Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03195

Experiment: PDB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS03190 and DDA3937_RS03195 are separated by 37 nucleotidesDDA3937_RS03195 and DDA3937_RS03200 are separated by 113 nucleotides DDA3937_RS03190: DDA3937_RS03190 - 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC, at 699,569 to 700,597 _RS03190 DDA3937_RS03195: DDA3937_RS03195 - aldo/keto reductase, at 700,635 to 701,630 _RS03195 DDA3937_RS03200: DDA3937_RS03200 - LysR family transcriptional regulator, at 701,744 to 702,646 _RS03200 Position (kb) 700 701 702Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 699.661 kb on + strandat 699.661 kb on + strandat 699.661 kb on + strandat 699.662 kb on - strandat 699.714 kb on - strand, within DDA3937_RS03190at 699.714 kb on - strand, within DDA3937_RS03190at 699.714 kb on - strand, within DDA3937_RS03190at 699.714 kb on - strand, within DDA3937_RS03190at 699.812 kb on + strand, within DDA3937_RS03190at 699.812 kb on + strand, within DDA3937_RS03190at 699.812 kb on + strand, within DDA3937_RS03190at 699.813 kb on - strand, within DDA3937_RS03190at 699.813 kb on - strand, within DDA3937_RS03190at 699.813 kb on - strand, within DDA3937_RS03190at 699.815 kb on + strand, within DDA3937_RS03190at 699.815 kb on + strand, within DDA3937_RS03190at 699.938 kb on - strand, within DDA3937_RS03190at 700.052 kb on + strand, within DDA3937_RS03190at 700.052 kb on + strand, within DDA3937_RS03190at 700.053 kb on - strand, within DDA3937_RS03190at 700.092 kb on + strand, within DDA3937_RS03190at 700.093 kb on - strand, within DDA3937_RS03190at 700.162 kb on + strand, within DDA3937_RS03190at 700.399 kb on + strand, within DDA3937_RS03190at 700.400 kb on - strand, within DDA3937_RS03190at 700.400 kb on - strand, within DDA3937_RS03190at 700.400 kb on - strand, within DDA3937_RS03190at 700.585 kb on + strandat 700.585 kb on + strandat 700.586 kb on - strandat 700.586 kb on - strandat 700.586 kb on - strandat 700.586 kb on - strandat 700.586 kb on - strandat 700.596 kb on - strandat 700.632 kb on + strandat 700.632 kb on + strandat 700.632 kb on + strandat 700.633 kb on - strandat 700.633 kb on - strandat 700.828 kb on - strand, within DDA3937_RS03195at 701.020 kb on + strand, within DDA3937_RS03195at 701.020 kb on + strand, within DDA3937_RS03195at 701.021 kb on - strand, within DDA3937_RS03195at 701.021 kb on - strand, within DDA3937_RS03195at 701.021 kb on - strand, within DDA3937_RS03195at 701.096 kb on - strand, within DDA3937_RS03195at 701.117 kb on + strand, within DDA3937_RS03195at 701.117 kb on + strand, within DDA3937_RS03195at 701.174 kb on + strand, within DDA3937_RS03195at 701.175 kb on - strand, within DDA3937_RS03195at 701.176 kb on + strand, within DDA3937_RS03195at 701.177 kb on - strand, within DDA3937_RS03195at 701.177 kb on - strand, within DDA3937_RS03195at 701.177 kb on - strand, within DDA3937_RS03195at 701.177 kb on - strand, within DDA3937_RS03195at 701.260 kb on + strand, within DDA3937_RS03195at 701.264 kb on - strand, within DDA3937_RS03195at 701.264 kb on - strand, within DDA3937_RS03195at 701.323 kb on + strand, within DDA3937_RS03195at 701.323 kb on + strand, within DDA3937_RS03195at 701.324 kb on - strand, within DDA3937_RS03195at 701.324 kb on - strand, within DDA3937_RS03195at 701.461 kb on + strand, within DDA3937_RS03195at 701.461 kb on + strand, within DDA3937_RS03195at 701.461 kb on + strand, within DDA3937_RS03195at 701.461 kb on + strand, within DDA3937_RS03195at 701.461 kb on + strand, within DDA3937_RS03195at 701.461 kb on + strand, within DDA3937_RS03195at 701.461 kb on + strand, within DDA3937_RS03195at 701.462 kb on - strand, within DDA3937_RS03195at 701.462 kb on - strand, within DDA3937_RS03195at 701.462 kb on - strand, within DDA3937_RS03195at 701.462 kb on - strand, within DDA3937_RS03195at 701.462 kb on - strand, within DDA3937_RS03195at 701.551 kb on + strandat 701.613 kb on + strandat 701.634 kb on + strandat 701.634 kb on + strandat 701.635 kb on - strandat 701.637 kb on + strandat 701.638 kb on - strandat 701.638 kb on - strandat 701.690 kb on - strandat 701.704 kb on - strandat 701.761 kb on + strandat 701.762 kb on - strandat 701.910 kb on + strand, within DDA3937_RS03200at 701.936 kb on + strand, within DDA3937_RS03200at 701.936 kb on + strand, within DDA3937_RS03200at 701.936 kb on + strand, within DDA3937_RS03200at 701.936 kb on + strand, within DDA3937_RS03200at 701.936 kb on + strand, within DDA3937_RS03200at 701.936 kb on + strand, within DDA3937_RS03200at 701.937 kb on - strand, within DDA3937_RS03200at 701.937 kb on - strand, within DDA3937_RS03200at 701.937 kb on - strand, within DDA3937_RS03200at 701.937 kb on - strand, within DDA3937_RS03200at 701.937 kb on - strand, within DDA3937_RS03200at 701.939 kb on + strand, within DDA3937_RS03200at 701.940 kb on - strand, within DDA3937_RS03200at 701.940 kb on - strand, within DDA3937_RS03200at 702.034 kb on + strand, within DDA3937_RS03200at 702.035 kb on - strand, within DDA3937_RS03200at 702.035 kb on - strand, within DDA3937_RS03200at 702.086 kb on + strand, within DDA3937_RS03200at 702.186 kb on + strand, within DDA3937_RS03200at 702.186 kb on + strand, within DDA3937_RS03200at 702.186 kb on + strand, within DDA3937_RS03200at 702.187 kb on - strand, within DDA3937_RS03200at 702.204 kb on + strand, within DDA3937_RS03200at 702.254 kb on + strand, within DDA3937_RS03200at 702.254 kb on + strand, within DDA3937_RS03200at 702.254 kb on + strand, within DDA3937_RS03200at 702.255 kb on - strand, within DDA3937_RS03200at 702.255 kb on - strand, within DDA3937_RS03200at 702.317 kb on + strand, within DDA3937_RS03200at 702.318 kb on - strandat 702.425 kb on + strand, within DDA3937_RS03200at 702.425 kb on + strand, within DDA3937_RS03200at 702.425 kb on + strand, within DDA3937_RS03200at 702.425 kb on + strand, within DDA3937_RS03200at 702.426 kb on - strand, within DDA3937_RS03200at 702.426 kb on - strand, within DDA3937_RS03200at 702.426 kb on - strand, within DDA3937_RS03200at 702.426 kb on - strand, within DDA3937_RS03200at 702.426 kb on - strand, within DDA3937_RS03200at 702.551 kb on + strand, within DDA3937_RS03200at 702.551 kb on + strand, within DDA3937_RS03200at 702.551 kb on + strand, within DDA3937_RS03200at 702.551 kb on + strand, within DDA3937_RS03200at 702.552 kb on - strand, within DDA3937_RS03200at 702.552 kb on - strand, within DDA3937_RS03200at 702.552 kb on - strand, within DDA3937_RS03200at 702.552 kb on - strand, within DDA3937_RS03200at 702.560 kb on + strandat 702.560 kb on + strandat 702.560 kb on + strandat 702.561 kb on - strandat 702.561 kb on - strandat 702.561 kb on - strandat 702.561 kb on - strandat 702.561 kb on - strandat 702.561 kb on - strandat 702.561 kb on - strandat 702.561 kb on - strandat 702.561 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PDB
remove
699,661 + -1.6
699,661 + +1.2
699,661 + +1.1
699,662 - +1.1
699,714 - DDA3937_RS03190 0.14 +1.6
699,714 - DDA3937_RS03190 0.14 -2.6
699,714 - DDA3937_RS03190 0.14 +1.9
699,714 - DDA3937_RS03190 0.14 +1.6
699,812 + DDA3937_RS03190 0.24 -0.9
699,812 + DDA3937_RS03190 0.24 -0.2
699,812 + DDA3937_RS03190 0.24 -2.2
699,813 - DDA3937_RS03190 0.24 -1.4
699,813 - DDA3937_RS03190 0.24 +1.2
699,813 - DDA3937_RS03190 0.24 -1.7
699,815 + DDA3937_RS03190 0.24 +0.1
699,815 + DDA3937_RS03190 0.24 +1.1
699,938 - DDA3937_RS03190 0.36 -1.7
700,052 + DDA3937_RS03190 0.47 +2.5
700,052 + DDA3937_RS03190 0.47 +0.6
700,053 - DDA3937_RS03190 0.47 +0.5
700,092 + DDA3937_RS03190 0.51 +2.2
700,093 - DDA3937_RS03190 0.51 +0.1
700,162 + DDA3937_RS03190 0.58 +0.5
700,399 + DDA3937_RS03190 0.81 -2.8
700,400 - DDA3937_RS03190 0.81 -2.6
700,400 - DDA3937_RS03190 0.81 -1.2
700,400 - DDA3937_RS03190 0.81 -1.2
700,585 + -0.2
700,585 + -1.0
700,586 - -1.6
700,586 - -2.1
700,586 - +0.5
700,586 - -0.7
700,586 - +1.5
700,596 - -0.7
700,632 + +1.0
700,632 + -2.0
700,632 + -1.2
700,633 - +1.4
700,633 - -1.6
700,828 - DDA3937_RS03195 0.19 -0.5
701,020 + DDA3937_RS03195 0.39 -3.4
701,020 + DDA3937_RS03195 0.39 -0.5
701,021 - DDA3937_RS03195 0.39 -0.8
701,021 - DDA3937_RS03195 0.39 -1.4
701,021 - DDA3937_RS03195 0.39 -2.2
701,096 - DDA3937_RS03195 0.46 -2.5
701,117 + DDA3937_RS03195 0.48 -2.5
701,117 + DDA3937_RS03195 0.48 -0.1
701,174 + DDA3937_RS03195 0.54 +0.5
701,175 - DDA3937_RS03195 0.54 +0.3
701,176 + DDA3937_RS03195 0.54 -0.4
701,177 - DDA3937_RS03195 0.54 -2.8
701,177 - DDA3937_RS03195 0.54 -3.2
701,177 - DDA3937_RS03195 0.54 +1.1
701,177 - DDA3937_RS03195 0.54 -1.5
701,260 + DDA3937_RS03195 0.63 +0.8
701,264 - DDA3937_RS03195 0.63 -1.9
701,264 - DDA3937_RS03195 0.63 +1.7
701,323 + DDA3937_RS03195 0.69 -2.1
701,323 + DDA3937_RS03195 0.69 +0.0
701,324 - DDA3937_RS03195 0.69 -0.5
701,324 - DDA3937_RS03195 0.69 -1.2
701,461 + DDA3937_RS03195 0.83 +0.6
701,461 + DDA3937_RS03195 0.83 +1.0
701,461 + DDA3937_RS03195 0.83 -1.5
701,461 + DDA3937_RS03195 0.83 +1.6
701,461 + DDA3937_RS03195 0.83 -0.6
701,461 + DDA3937_RS03195 0.83 -0.8
701,461 + DDA3937_RS03195 0.83 +0.0
701,462 - DDA3937_RS03195 0.83 +1.7
701,462 - DDA3937_RS03195 0.83 +0.6
701,462 - DDA3937_RS03195 0.83 -0.4
701,462 - DDA3937_RS03195 0.83 +0.7
701,462 - DDA3937_RS03195 0.83 -3.0
701,551 + +1.2
701,613 + +1.4
701,634 + +2.8
701,634 + -1.7
701,635 - -0.3
701,637 + -2.3
701,638 - -0.6
701,638 - +0.9
701,690 - +0.4
701,704 - -1.6
701,761 + +1.0
701,762 - +1.2
701,910 + DDA3937_RS03200 0.18 -0.1
701,936 + DDA3937_RS03200 0.21 -1.6
701,936 + DDA3937_RS03200 0.21 -0.4
701,936 + DDA3937_RS03200 0.21 +0.2
701,936 + DDA3937_RS03200 0.21 +0.2
701,936 + DDA3937_RS03200 0.21 +1.4
701,936 + DDA3937_RS03200 0.21 +0.6
701,937 - DDA3937_RS03200 0.21 -2.9
701,937 - DDA3937_RS03200 0.21 +0.7
701,937 - DDA3937_RS03200 0.21 -2.4
701,937 - DDA3937_RS03200 0.21 -1.9
701,937 - DDA3937_RS03200 0.21 -2.0
701,939 + DDA3937_RS03200 0.22 +0.3
701,940 - DDA3937_RS03200 0.22 -0.4
701,940 - DDA3937_RS03200 0.22 -1.7
702,034 + DDA3937_RS03200 0.32 +1.3
702,035 - DDA3937_RS03200 0.32 +0.9
702,035 - DDA3937_RS03200 0.32 -2.3
702,086 + DDA3937_RS03200 0.38 -1.9
702,186 + DDA3937_RS03200 0.49 -3.0
702,186 + DDA3937_RS03200 0.49 +1.4
702,186 + DDA3937_RS03200 0.49 +0.4
702,187 - DDA3937_RS03200 0.49 -2.8
702,204 + DDA3937_RS03200 0.51 -1.9
702,254 + DDA3937_RS03200 0.56 -1.4
702,254 + DDA3937_RS03200 0.56 -3.2
702,254 + DDA3937_RS03200 0.56 +1.4
702,255 - DDA3937_RS03200 0.57 -2.7
702,255 - DDA3937_RS03200 0.57 +0.2
702,317 + DDA3937_RS03200 0.63 +0.8
702,318 - -1.0
702,425 + DDA3937_RS03200 0.75 -1.6
702,425 + DDA3937_RS03200 0.75 -2.9
702,425 + DDA3937_RS03200 0.75 -1.0
702,425 + DDA3937_RS03200 0.75 -0.7
702,426 - DDA3937_RS03200 0.76 -1.4
702,426 - DDA3937_RS03200 0.76 -2.3
702,426 - DDA3937_RS03200 0.76 +0.9
702,426 - DDA3937_RS03200 0.76 +1.4
702,426 - DDA3937_RS03200 0.76 -1.6
702,551 + DDA3937_RS03200 0.89 +1.5
702,551 + DDA3937_RS03200 0.89 +0.2
702,551 + DDA3937_RS03200 0.89 -1.9
702,551 + DDA3937_RS03200 0.89 +2.3
702,552 - DDA3937_RS03200 0.89 -0.2
702,552 - DDA3937_RS03200 0.89 +0.8
702,552 - DDA3937_RS03200 0.89 -2.1
702,552 - DDA3937_RS03200 0.89 -2.1
702,560 + -0.1
702,560 + +0.5
702,560 + -0.7
702,561 - +0.4
702,561 - -1.4
702,561 - -0.7
702,561 - +0.7
702,561 - +1.3
702,561 - -1.0
702,561 - +1.6
702,561 - -1.2
702,561 - +0.9

Or see this region's nucleotide sequence