Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02880 and DDA3937_RS02885 are separated by 243 nucleotides DDA3937_RS02885 and DDA3937_RS02890 are separated by 183 nucleotides
DDA3937_RS02880: DDA3937_RS02880 - hexose-6-phosphate:phosphate antiporter, at 635,707 to 637,098
_RS02880
DDA3937_RS02885: DDA3937_RS02885 - ATP-independent periplasmic protein-refolding chaperone, at 637,342 to 637,818
_RS02885
DDA3937_RS02890: DDA3937_RS02890 - FAD:protein FMN transferase ApbE, at 638,002 to 639,051
_RS02890
Position (kb) 637
638 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 636.365 kb on - strand, within DDA3937_RS02880 at 636.466 kb on + strand, within DDA3937_RS02880 at 636.466 kb on + strand, within DDA3937_RS02880 at 636.466 kb on + strand, within DDA3937_RS02880 at 636.466 kb on + strand, within DDA3937_RS02880 at 636.467 kb on - strand, within DDA3937_RS02880 at 636.467 kb on - strand, within DDA3937_RS02880 at 636.467 kb on - strand, within DDA3937_RS02880 at 636.467 kb on - strand, within DDA3937_RS02880 at 636.481 kb on - strand, within DDA3937_RS02880 at 636.481 kb on - strand, within DDA3937_RS02880 at 636.520 kb on + strand, within DDA3937_RS02880 at 636.521 kb on - strand, within DDA3937_RS02880 at 636.559 kb on + strand, within DDA3937_RS02880 at 636.560 kb on - strand, within DDA3937_RS02880 at 636.560 kb on - strand, within DDA3937_RS02880 at 636.560 kb on - strand, within DDA3937_RS02880 at 636.560 kb on - strand, within DDA3937_RS02880 at 636.565 kb on + strand, within DDA3937_RS02880 at 636.639 kb on + strand, within DDA3937_RS02880 at 636.699 kb on + strand, within DDA3937_RS02880 at 636.736 kb on + strand, within DDA3937_RS02880 at 636.757 kb on + strand, within DDA3937_RS02880 at 636.757 kb on + strand, within DDA3937_RS02880 at 636.757 kb on + strand, within DDA3937_RS02880 at 636.757 kb on + strand, within DDA3937_RS02880 at 636.757 kb on + strand, within DDA3937_RS02880 at 636.757 kb on + strand, within DDA3937_RS02880 at 636.757 kb on + strand, within DDA3937_RS02880 at 636.758 kb on - strand, within DDA3937_RS02880 at 636.758 kb on - strand, within DDA3937_RS02880 at 636.758 kb on - strand, within DDA3937_RS02880 at 636.758 kb on - strand, within DDA3937_RS02880 at 636.758 kb on - strand, within DDA3937_RS02880 at 636.758 kb on - strand, within DDA3937_RS02880 at 636.758 kb on - strand, within DDA3937_RS02880 at 636.758 kb on - strand, within DDA3937_RS02880 at 636.758 kb on - strand, within DDA3937_RS02880 at 636.758 kb on - strand, within DDA3937_RS02880 at 636.758 kb on - strand, within DDA3937_RS02880 at 636.758 kb on - strand, within DDA3937_RS02880 at 636.763 kb on + strand, within DDA3937_RS02880 at 636.764 kb on - strand, within DDA3937_RS02880 at 636.795 kb on - strand, within DDA3937_RS02880 at 636.795 kb on - strand, within DDA3937_RS02880 at 636.892 kb on + strand, within DDA3937_RS02880 at 637.014 kb on + strand at 637.014 kb on + strand at 637.144 kb on + strand at 637.144 kb on + strand at 637.145 kb on - strand at 637.145 kb on - strand at 637.145 kb on - strand at 637.145 kb on - strand at 637.147 kb on + strand at 637.147 kb on + strand at 637.147 kb on + strand at 637.147 kb on + strand at 637.148 kb on - strand at 637.148 kb on - strand at 637.148 kb on - strand at 637.148 kb on - strand at 637.217 kb on + strand at 637.218 kb on - strand at 637.218 kb on - strand at 637.271 kb on + strand at 637.271 kb on + strand at 637.271 kb on + strand at 637.271 kb on + strand at 637.272 kb on - strand at 637.272 kb on - strand at 637.272 kb on - strand at 637.272 kb on - strand at 637.274 kb on - strand at 637.274 kb on - strand at 637.309 kb on - strand at 637.311 kb on + strand at 637.311 kb on + strand at 637.315 kb on + strand at 637.315 kb on + strand at 637.316 kb on - strand at 637.341 kb on + strand at 637.341 kb on + strand at 637.341 kb on + strand at 637.341 kb on + strand at 637.341 kb on + strand at 637.341 kb on + strand at 637.341 kb on + strand at 637.341 kb on + strand at 637.341 kb on + strand at 637.341 kb on + strand at 637.342 kb on - strand at 637.342 kb on - strand at 637.342 kb on - strand at 637.342 kb on - strand at 637.342 kb on - strand at 637.342 kb on - strand at 637.342 kb on - strand at 637.342 kb on - strand at 637.342 kb on - strand at 637.348 kb on - strand at 637.405 kb on + strand, within DDA3937_RS02885 at 637.406 kb on - strand, within DDA3937_RS02885 at 637.406 kb on - strand, within DDA3937_RS02885 at 637.406 kb on - strand, within DDA3937_RS02885 at 637.417 kb on - strand, within DDA3937_RS02885 at 637.419 kb on + strand, within DDA3937_RS02885 at 637.419 kb on + strand, within DDA3937_RS02885 at 637.420 kb on - strand, within DDA3937_RS02885 at 637.420 kb on - strand, within DDA3937_RS02885 at 637.420 kb on - strand, within DDA3937_RS02885 at 637.420 kb on - strand, within DDA3937_RS02885 at 637.420 kb on - strand, within DDA3937_RS02885 at 637.443 kb on + strand, within DDA3937_RS02885 at 637.444 kb on - strand, within DDA3937_RS02885 at 637.444 kb on - strand, within DDA3937_RS02885 at 637.444 kb on - strand, within DDA3937_RS02885 at 637.444 kb on - strand, within DDA3937_RS02885 at 637.503 kb on + strand, within DDA3937_RS02885 at 637.504 kb on - strand, within DDA3937_RS02885 at 637.638 kb on + strand, within DDA3937_RS02885 at 637.638 kb on + strand, within DDA3937_RS02885 at 637.726 kb on + strand, within DDA3937_RS02885 at 637.726 kb on + strand, within DDA3937_RS02885 at 637.726 kb on + strand, within DDA3937_RS02885 at 637.727 kb on - strand, within DDA3937_RS02885 at 637.727 kb on - strand, within DDA3937_RS02885 at 637.727 kb on - strand, within DDA3937_RS02885 at 637.817 kb on - strand at 637.884 kb on + strand at 637.884 kb on + strand at 637.884 kb on + strand at 637.884 kb on + strand at 637.885 kb on - strand at 637.885 kb on - strand at 637.968 kb on + strand at 638.065 kb on - strand at 638.065 kb on - strand at 638.065 kb on - strand at 638.101 kb on - strand at 638.134 kb on + strand, within DDA3937_RS02890 at 638.134 kb on + strand, within DDA3937_RS02890 at 638.135 kb on - strand, within DDA3937_RS02890 at 638.180 kb on + strand, within DDA3937_RS02890 at 638.180 kb on + strand, within DDA3937_RS02890 at 638.233 kb on + strand, within DDA3937_RS02890 at 638.239 kb on - strand, within DDA3937_RS02890 at 638.262 kb on + strand, within DDA3937_RS02890 at 638.487 kb on - strand, within DDA3937_RS02890 at 638.536 kb on + strand, within DDA3937_RS02890 at 638.536 kb on + strand, within DDA3937_RS02890 at 638.536 kb on + strand, within DDA3937_RS02890 at 638.537 kb on - strand, within DDA3937_RS02890 at 638.537 kb on - strand, within DDA3937_RS02890 at 638.537 kb on - strand, within DDA3937_RS02890 at 638.617 kb on + strand at 638.618 kb on - strand, within DDA3937_RS02890 at 638.757 kb on + strand, within DDA3937_RS02890 at 638.757 kb on + strand, within DDA3937_RS02890 at 638.757 kb on + strand, within DDA3937_RS02890 at 638.757 kb on + strand, within DDA3937_RS02890 at 638.758 kb on - strand, within DDA3937_RS02890 at 638.771 kb on - strand, within DDA3937_RS02890 at 638.779 kb on + strand, within DDA3937_RS02890 at 638.804 kb on - strand, within DDA3937_RS02890
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 636,365 - DDA3937_RS02880 0.47 +0.6 636,466 + DDA3937_RS02880 0.55 -2.6 636,466 + DDA3937_RS02880 0.55 -1.8 636,466 + DDA3937_RS02880 0.55 +0.2 636,466 + DDA3937_RS02880 0.55 +0.4 636,467 - DDA3937_RS02880 0.55 +0.3 636,467 - DDA3937_RS02880 0.55 +1.5 636,467 - DDA3937_RS02880 0.55 -1.5 636,467 - DDA3937_RS02880 0.55 +3.9 636,481 - DDA3937_RS02880 0.56 -2.2 636,481 - DDA3937_RS02880 0.56 +0.4 636,520 + DDA3937_RS02880 0.58 -2.6 636,521 - DDA3937_RS02880 0.58 -2.6 636,559 + DDA3937_RS02880 0.61 -3.4 636,560 - DDA3937_RS02880 0.61 -1.6 636,560 - DDA3937_RS02880 0.61 -1.8 636,560 - DDA3937_RS02880 0.61 -1.2 636,560 - DDA3937_RS02880 0.61 -3.3 636,565 + DDA3937_RS02880 0.62 -1.2 636,639 + DDA3937_RS02880 0.67 -1.7 636,699 + DDA3937_RS02880 0.71 -2.7 636,736 + DDA3937_RS02880 0.74 -0.9 636,757 + DDA3937_RS02880 0.75 -1.5 636,757 + DDA3937_RS02880 0.75 +0.1 636,757 + DDA3937_RS02880 0.75 +0.6 636,757 + DDA3937_RS02880 0.75 -1.9 636,757 + DDA3937_RS02880 0.75 -0.3 636,757 + DDA3937_RS02880 0.75 -1.6 636,757 + DDA3937_RS02880 0.75 +0.2 636,758 - DDA3937_RS02880 0.76 -2.4 636,758 - DDA3937_RS02880 0.76 -1.0 636,758 - DDA3937_RS02880 0.76 -3.1 636,758 - DDA3937_RS02880 0.76 -2.5 636,758 - DDA3937_RS02880 0.76 -1.8 636,758 - DDA3937_RS02880 0.76 +0.4 636,758 - DDA3937_RS02880 0.76 -3.1 636,758 - DDA3937_RS02880 0.76 -0.3 636,758 - DDA3937_RS02880 0.76 -2.8 636,758 - DDA3937_RS02880 0.76 -1.7 636,758 - DDA3937_RS02880 0.76 -2.2 636,758 - DDA3937_RS02880 0.76 -1.6 636,763 + DDA3937_RS02880 0.76 -3.4 636,764 - DDA3937_RS02880 0.76 -1.7 636,795 - DDA3937_RS02880 0.78 -2.7 636,795 - DDA3937_RS02880 0.78 -1.3 636,892 + DDA3937_RS02880 0.85 -0.3 637,014 + -1.8 637,014 + -1.2 637,144 + -2.5 637,144 + -1.2 637,145 - -0.4 637,145 - -1.8 637,145 - -3.2 637,145 - -0.7 637,147 + -2.5 637,147 + -2.8 637,147 + +0.4 637,147 + -0.4 637,148 - -1.8 637,148 - -2.1 637,148 - +0.2 637,148 - -3.0 637,217 + +1.4 637,218 - -1.4 637,218 - -3.2 637,271 + -0.3 637,271 + +1.4 637,271 + +0.8 637,271 + +2.3 637,272 - +0.6 637,272 - +2.7 637,272 - +2.2 637,272 - -2.3 637,274 - +1.5 637,274 - -3.3 637,309 - +0.0 637,311 + +0.2 637,311 + -3.0 637,315 + +2.4 637,315 + +0.6 637,316 - -2.0 637,341 + -2.6 637,341 + -1.9 637,341 + -2.0 637,341 + +0.4 637,341 + +0.4 637,341 + +2.4 637,341 + -0.1 637,341 + -1.8 637,341 + +0.0 637,341 + +4.1 637,342 - -1.8 637,342 - -1.4 637,342 - -1.7 637,342 - -2.2 637,342 - -2.6 637,342 - +1.0 637,342 - -0.6 637,342 - -1.9 637,342 - -1.7 637,348 - +0.6 637,405 + DDA3937_RS02885 0.13 -1.2 637,406 - DDA3937_RS02885 0.13 -3.7 637,406 - DDA3937_RS02885 0.13 -3.0 637,406 - DDA3937_RS02885 0.13 -2.6 637,417 - DDA3937_RS02885 0.16 -0.8 637,419 + DDA3937_RS02885 0.16 +3.2 637,419 + DDA3937_RS02885 0.16 +0.0 637,420 - DDA3937_RS02885 0.16 -0.4 637,420 - DDA3937_RS02885 0.16 +0.9 637,420 - DDA3937_RS02885 0.16 -1.0 637,420 - DDA3937_RS02885 0.16 +1.3 637,420 - DDA3937_RS02885 0.16 -1.4 637,443 + DDA3937_RS02885 0.21 +2.0 637,444 - DDA3937_RS02885 0.21 -1.7 637,444 - DDA3937_RS02885 0.21 +0.4 637,444 - DDA3937_RS02885 0.21 -2.0 637,444 - DDA3937_RS02885 0.21 -1.1 637,503 + DDA3937_RS02885 0.34 -0.7 637,504 - DDA3937_RS02885 0.34 -1.2 637,638 + DDA3937_RS02885 0.62 -1.6 637,638 + DDA3937_RS02885 0.62 -1.8 637,726 + DDA3937_RS02885 0.81 +2.1 637,726 + DDA3937_RS02885 0.81 +0.3 637,726 + DDA3937_RS02885 0.81 +0.9 637,727 - DDA3937_RS02885 0.81 -0.7 637,727 - DDA3937_RS02885 0.81 -0.1 637,727 - DDA3937_RS02885 0.81 +0.7 637,817 - -2.1 637,884 + -0.6 637,884 + -1.2 637,884 + -2.8 637,884 + -1.7 637,885 - +0.4 637,885 - +0.6 637,968 + -1.6 638,065 - +2.5 638,065 - -1.7 638,065 - -1.8 638,101 - -1.7 638,134 + DDA3937_RS02890 0.13 -1.7 638,134 + DDA3937_RS02890 0.13 -1.8 638,135 - DDA3937_RS02890 0.13 -2.0 638,180 + DDA3937_RS02890 0.17 -0.0 638,180 + DDA3937_RS02890 0.17 +0.6 638,233 + DDA3937_RS02890 0.22 -1.2 638,239 - DDA3937_RS02890 0.23 -2.2 638,262 + DDA3937_RS02890 0.25 +2.4 638,487 - DDA3937_RS02890 0.46 +1.6 638,536 + DDA3937_RS02890 0.51 -2.0 638,536 + DDA3937_RS02890 0.51 +1.8 638,536 + DDA3937_RS02890 0.51 -1.7 638,537 - DDA3937_RS02890 0.51 -2.8 638,537 - DDA3937_RS02890 0.51 +0.0 638,537 - DDA3937_RS02890 0.51 +0.6 638,617 + +0.6 638,618 - DDA3937_RS02890 0.59 +1.3 638,757 + DDA3937_RS02890 0.72 +1.0 638,757 + DDA3937_RS02890 0.72 -2.0 638,757 + DDA3937_RS02890 0.72 -1.2 638,757 + DDA3937_RS02890 0.72 -2.1 638,758 - DDA3937_RS02890 0.72 -1.6 638,771 - DDA3937_RS02890 0.73 +2.2 638,779 + DDA3937_RS02890 0.74 -1.4 638,804 - DDA3937_RS02890 0.76 +0.1
Or see this region's nucleotide sequence