Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02715 and DDA3937_RS02720 are separated by 174 nucleotides DDA3937_RS02720 and DDA3937_RS02725 are separated by 442 nucleotides
DDA3937_RS02715: DDA3937_RS02715 - anaerobic C4-dicarboxylate transporter, at 599,639 to 600,940
_RS02715
DDA3937_RS02720: DDA3937_RS02720 - aspartate ammonia-lyase, at 601,115 to 602,554
_RS02720
DDA3937_RS02725: DDA3937_RS02725 - FxsA family protein, at 602,997 to 603,524
_RS02725
Position (kb) 601
602
603 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 600.223 kb on - strand, within DDA3937_RS02715 at 600.342 kb on + strand, within DDA3937_RS02715 at 600.342 kb on + strand, within DDA3937_RS02715 at 600.343 kb on - strand, within DDA3937_RS02715 at 600.415 kb on + strand, within DDA3937_RS02715 at 600.447 kb on + strand, within DDA3937_RS02715 at 600.447 kb on + strand, within DDA3937_RS02715 at 600.651 kb on + strand, within DDA3937_RS02715 at 600.651 kb on + strand, within DDA3937_RS02715 at 600.651 kb on + strand, within DDA3937_RS02715 at 600.651 kb on + strand, within DDA3937_RS02715 at 600.652 kb on - strand, within DDA3937_RS02715 at 600.681 kb on + strand at 600.681 kb on + strand, within DDA3937_RS02715 at 600.682 kb on - strand, within DDA3937_RS02715 at 600.726 kb on + strand, within DDA3937_RS02715 at 600.900 kb on + strand at 600.900 kb on + strand at 600.900 kb on + strand at 600.900 kb on + strand at 600.901 kb on - strand at 600.920 kb on - strand at 600.934 kb on + strand at 601.013 kb on - strand at 601.048 kb on + strand at 601.048 kb on + strand at 601.049 kb on - strand at 601.049 kb on - strand at 601.055 kb on + strand at 601.055 kb on + strand at 601.055 kb on + strand at 601.055 kb on + strand at 601.060 kb on + strand at 601.061 kb on - strand at 601.095 kb on + strand at 601.095 kb on + strand at 601.096 kb on - strand at 601.117 kb on - strand at 601.155 kb on + strand at 601.156 kb on - strand at 601.156 kb on - strand at 601.314 kb on + strand, within DDA3937_RS02720 at 601.314 kb on + strand, within DDA3937_RS02720 at 601.314 kb on + strand, within DDA3937_RS02720 at 601.314 kb on + strand, within DDA3937_RS02720 at 601.314 kb on + strand, within DDA3937_RS02720 at 601.314 kb on + strand, within DDA3937_RS02720 at 601.314 kb on + strand, within DDA3937_RS02720 at 601.314 kb on + strand, within DDA3937_RS02720 at 601.315 kb on - strand, within DDA3937_RS02720 at 601.315 kb on - strand, within DDA3937_RS02720 at 601.315 kb on - strand, within DDA3937_RS02720 at 601.315 kb on - strand, within DDA3937_RS02720 at 601.336 kb on + strand, within DDA3937_RS02720 at 601.336 kb on + strand, within DDA3937_RS02720 at 601.336 kb on + strand, within DDA3937_RS02720 at 601.336 kb on + strand, within DDA3937_RS02720 at 601.336 kb on + strand, within DDA3937_RS02720 at 601.337 kb on - strand, within DDA3937_RS02720 at 601.337 kb on - strand, within DDA3937_RS02720 at 601.337 kb on - strand, within DDA3937_RS02720 at 601.337 kb on - strand, within DDA3937_RS02720 at 601.337 kb on - strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.345 kb on - strand, within DDA3937_RS02720 at 601.345 kb on - strand, within DDA3937_RS02720 at 601.345 kb on - strand, within DDA3937_RS02720 at 601.345 kb on - strand, within DDA3937_RS02720 at 601.345 kb on - strand, within DDA3937_RS02720 at 601.345 kb on - strand, within DDA3937_RS02720 at 601.345 kb on - strand, within DDA3937_RS02720 at 601.404 kb on + strand, within DDA3937_RS02720 at 601.404 kb on + strand, within DDA3937_RS02720 at 601.405 kb on - strand, within DDA3937_RS02720 at 601.405 kb on - strand, within DDA3937_RS02720 at 601.405 kb on - strand, within DDA3937_RS02720 at 601.725 kb on + strand, within DDA3937_RS02720 at 601.726 kb on - strand, within DDA3937_RS02720 at 601.806 kb on - strand, within DDA3937_RS02720 at 601.822 kb on - strand, within DDA3937_RS02720 at 601.822 kb on - strand, within DDA3937_RS02720 at 602.054 kb on + strand, within DDA3937_RS02720 at 602.085 kb on + strand, within DDA3937_RS02720 at 602.085 kb on + strand, within DDA3937_RS02720 at 602.086 kb on - strand, within DDA3937_RS02720 at 602.086 kb on - strand, within DDA3937_RS02720 at 602.086 kb on - strand, within DDA3937_RS02720 at 602.086 kb on - strand, within DDA3937_RS02720 at 602.086 kb on - strand, within DDA3937_RS02720 at 602.170 kb on - strand, within DDA3937_RS02720 at 602.170 kb on - strand, within DDA3937_RS02720 at 602.306 kb on + strand, within DDA3937_RS02720 at 602.306 kb on + strand, within DDA3937_RS02720 at 602.307 kb on - strand, within DDA3937_RS02720 at 602.307 kb on - strand, within DDA3937_RS02720 at 602.351 kb on + strand, within DDA3937_RS02720 at 602.351 kb on + strand, within DDA3937_RS02720 at 602.352 kb on - strand, within DDA3937_RS02720 at 602.399 kb on + strand, within DDA3937_RS02720 at 602.399 kb on + strand, within DDA3937_RS02720 at 602.400 kb on - strand, within DDA3937_RS02720 at 602.412 kb on - strand at 602.449 kb on + strand at 602.451 kb on + strand at 602.451 kb on + strand at 602.451 kb on + strand at 602.451 kb on + strand at 602.451 kb on + strand at 602.451 kb on + strand at 602.451 kb on + strand at 602.451 kb on + strand at 602.451 kb on + strand at 602.451 kb on + strand at 602.452 kb on - strand at 602.452 kb on - strand at 602.452 kb on - strand at 602.452 kb on - strand at 602.487 kb on + strand at 602.488 kb on - strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.491 kb on - strand at 602.491 kb on - strand at 602.491 kb on - strand at 602.491 kb on - strand at 602.491 kb on - strand at 602.519 kb on + strand at 602.519 kb on + strand at 602.519 kb on + strand at 602.520 kb on - strand at 602.520 kb on - strand at 602.520 kb on - strand at 602.520 kb on - strand at 602.520 kb on - strand at 602.546 kb on - strand at 602.546 kb on - strand at 602.546 kb on - strand at 602.568 kb on + strand at 602.568 kb on + strand at 602.568 kb on + strand at 602.568 kb on + strand at 602.590 kb on + strand at 602.591 kb on - strand at 602.591 kb on - strand at 602.597 kb on + strand at 602.597 kb on + strand at 602.598 kb on - strand at 602.598 kb on - strand at 602.598 kb on - strand at 602.633 kb on - strand at 602.657 kb on + strand at 602.658 kb on - strand at 602.674 kb on - strand at 602.703 kb on - strand at 602.703 kb on - strand at 602.703 kb on - strand at 602.723 kb on + strand at 602.724 kb on - strand at 602.724 kb on - strand at 602.774 kb on + strand at 602.774 kb on + strand at 602.774 kb on + strand at 602.774 kb on + strand at 602.774 kb on + strand at 602.775 kb on - strand at 602.775 kb on - strand at 602.810 kb on + strand at 602.843 kb on + strand at 602.843 kb on + strand at 602.844 kb on - strand at 602.860 kb on + strand at 602.860 kb on + strand at 602.861 kb on - strand at 602.861 kb on - strand at 602.861 kb on - strand at 602.862 kb on + strand at 602.862 kb on + strand at 602.862 kb on + strand at 602.863 kb on - strand at 602.863 kb on - strand at 602.867 kb on + strand at 602.867 kb on + strand at 602.867 kb on + strand at 602.867 kb on + strand at 602.867 kb on + strand at 602.867 kb on + strand at 602.867 kb on + strand at 602.868 kb on - strand at 602.868 kb on - strand at 602.868 kb on - strand at 602.868 kb on - strand at 602.868 kb on - strand at 602.868 kb on - strand at 602.868 kb on - strand at 602.872 kb on + strand at 602.872 kb on + strand at 602.873 kb on - strand at 602.880 kb on + strand at 602.881 kb on - strand at 602.890 kb on + strand at 602.890 kb on + strand at 602.890 kb on + strand at 602.890 kb on + strand at 602.891 kb on - strand at 602.899 kb on - strand at 602.899 kb on - strand at 602.931 kb on + strand at 602.931 kb on + strand at 602.934 kb on + strand at 602.972 kb on + strand at 602.972 kb on + strand at 602.972 kb on + strand at 602.972 kb on + strand at 602.976 kb on + strand at 602.976 kb on + strand at 602.977 kb on - strand at 602.977 kb on - strand at 603.036 kb on + strand at 603.223 kb on + strand, within DDA3937_RS02725 at 603.224 kb on - strand, within DDA3937_RS02725 at 603.289 kb on + strand, within DDA3937_RS02725 at 603.290 kb on - strand, within DDA3937_RS02725
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 600,223 - DDA3937_RS02715 0.45 -3.3 600,342 + DDA3937_RS02715 0.54 -0.2 600,342 + DDA3937_RS02715 0.54 -0.4 600,343 - DDA3937_RS02715 0.54 +1.2 600,415 + DDA3937_RS02715 0.60 +1.3 600,447 + DDA3937_RS02715 0.62 +1.1 600,447 + DDA3937_RS02715 0.62 -0.7 600,651 + DDA3937_RS02715 0.78 +1.4 600,651 + DDA3937_RS02715 0.78 +0.9 600,651 + DDA3937_RS02715 0.78 +0.1 600,651 + DDA3937_RS02715 0.78 -0.5 600,652 - DDA3937_RS02715 0.78 +0.8 600,681 + -0.4 600,681 + DDA3937_RS02715 0.80 -0.2 600,682 - DDA3937_RS02715 0.80 +0.0 600,726 + DDA3937_RS02715 0.83 -2.6 600,900 + -1.0 600,900 + -0.7 600,900 + +1.6 600,900 + -0.7 600,901 - +0.4 600,920 - -1.0 600,934 + -2.6 601,013 - +1.5 601,048 + -1.4 601,048 + +1.1 601,049 - +1.5 601,049 - +0.9 601,055 + -2.0 601,055 + -2.2 601,055 + +0.8 601,055 + -1.4 601,060 + -2.3 601,061 - +1.5 601,095 + -2.5 601,095 + +0.5 601,096 - -0.4 601,117 - +2.9 601,155 + +1.4 601,156 - +2.9 601,156 - +2.7 601,314 + DDA3937_RS02720 0.14 +3.0 601,314 + DDA3937_RS02720 0.14 +1.5 601,314 + DDA3937_RS02720 0.14 +1.4 601,314 + DDA3937_RS02720 0.14 +3.3 601,314 + DDA3937_RS02720 0.14 +2.2 601,314 + DDA3937_RS02720 0.14 +1.1 601,314 + DDA3937_RS02720 0.14 +3.4 601,314 + DDA3937_RS02720 0.14 +2.2 601,315 - DDA3937_RS02720 0.14 +2.1 601,315 - DDA3937_RS02720 0.14 +2.2 601,315 - DDA3937_RS02720 0.14 +2.9 601,315 - DDA3937_RS02720 0.14 +3.1 601,336 + DDA3937_RS02720 0.15 +3.6 601,336 + DDA3937_RS02720 0.15 +2.6 601,336 + DDA3937_RS02720 0.15 +2.0 601,336 + DDA3937_RS02720 0.15 +2.0 601,336 + DDA3937_RS02720 0.15 +3.0 601,337 - DDA3937_RS02720 0.15 +2.0 601,337 - DDA3937_RS02720 0.15 +2.3 601,337 - DDA3937_RS02720 0.15 +3.3 601,337 - DDA3937_RS02720 0.15 +2.7 601,337 - DDA3937_RS02720 0.15 +2.7 601,344 + DDA3937_RS02720 0.16 +2.9 601,344 + DDA3937_RS02720 0.16 +2.3 601,344 + DDA3937_RS02720 0.16 +2.1 601,344 + DDA3937_RS02720 0.16 +2.3 601,344 + DDA3937_RS02720 0.16 +1.8 601,344 + DDA3937_RS02720 0.16 +3.2 601,344 + DDA3937_RS02720 0.16 +3.7 601,344 + DDA3937_RS02720 0.16 +3.3 601,345 - DDA3937_RS02720 0.16 +3.3 601,345 - DDA3937_RS02720 0.16 +2.5 601,345 - DDA3937_RS02720 0.16 +3.3 601,345 - DDA3937_RS02720 0.16 +3.2 601,345 - DDA3937_RS02720 0.16 +3.2 601,345 - DDA3937_RS02720 0.16 +1.4 601,345 - DDA3937_RS02720 0.16 +4.2 601,404 + DDA3937_RS02720 0.20 +2.3 601,404 + DDA3937_RS02720 0.20 +2.3 601,405 - DDA3937_RS02720 0.20 +2.7 601,405 - DDA3937_RS02720 0.20 +2.7 601,405 - DDA3937_RS02720 0.20 +2.9 601,725 + DDA3937_RS02720 0.42 +2.3 601,726 - DDA3937_RS02720 0.42 +2.5 601,806 - DDA3937_RS02720 0.48 +2.9 601,822 - DDA3937_RS02720 0.49 +1.2 601,822 - DDA3937_RS02720 0.49 +4.3 602,054 + DDA3937_RS02720 0.65 +2.5 602,085 + DDA3937_RS02720 0.67 +3.9 602,085 + DDA3937_RS02720 0.67 +2.9 602,086 - DDA3937_RS02720 0.67 +1.5 602,086 - DDA3937_RS02720 0.67 +2.7 602,086 - DDA3937_RS02720 0.67 +3.4 602,086 - DDA3937_RS02720 0.67 -2.3 602,086 - DDA3937_RS02720 0.67 +2.3 602,170 - DDA3937_RS02720 0.73 +2.5 602,170 - DDA3937_RS02720 0.73 +2.3 602,306 + DDA3937_RS02720 0.83 +2.5 602,306 + DDA3937_RS02720 0.83 +2.6 602,307 - DDA3937_RS02720 0.83 +2.8 602,307 - DDA3937_RS02720 0.83 +1.6 602,351 + DDA3937_RS02720 0.86 +2.5 602,351 + DDA3937_RS02720 0.86 +1.9 602,352 - DDA3937_RS02720 0.86 +2.2 602,399 + DDA3937_RS02720 0.89 +0.5 602,399 + DDA3937_RS02720 0.89 +3.3 602,400 - DDA3937_RS02720 0.89 +2.6 602,412 - +4.6 602,449 + +2.0 602,451 + +2.8 602,451 + +2.1 602,451 + +3.9 602,451 + +0.3 602,451 + +0.3 602,451 + +1.9 602,451 + +2.1 602,451 + +2.3 602,451 + +2.5 602,451 + +2.4 602,452 - +2.6 602,452 - +3.0 602,452 - +2.1 602,452 - +1.8 602,487 + +2.9 602,488 - +2.2 602,490 + +1.7 602,490 + +2.2 602,490 + +2.4 602,490 + +3.3 602,490 + -0.6 602,490 + +1.9 602,490 + +1.0 602,490 + +2.4 602,490 + +3.2 602,490 + +3.0 602,491 - +2.4 602,491 - +1.9 602,491 - +2.7 602,491 - +1.4 602,491 - +2.2 602,519 + +2.5 602,519 + +1.0 602,519 + +2.6 602,520 - +3.7 602,520 - +3.1 602,520 - -0.3 602,520 - +1.6 602,520 - +0.7 602,546 - -1.0 602,546 - +3.4 602,546 - +1.5 602,568 + +2.4 602,568 + +0.9 602,568 + +2.5 602,568 + +2.2 602,590 + +2.5 602,591 - +1.6 602,591 - -3.9 602,597 + +2.6 602,597 + +2.3 602,598 - +0.8 602,598 - +0.8 602,598 - -1.6 602,633 - -2.6 602,657 + +2.1 602,658 - -0.4 602,674 - -2.1 602,703 - -1.7 602,703 - -1.6 602,703 - +2.1 602,723 + +1.3 602,724 - -3.7 602,724 - +0.6 602,774 + -2.0 602,774 + -2.7 602,774 + +1.0 602,774 + -3.4 602,774 + -1.6 602,775 - -1.7 602,775 - +1.6 602,810 + -0.6 602,843 + +0.0 602,843 + -0.4 602,844 - -2.4 602,860 + -0.4 602,860 + +1.5 602,861 - -2.6 602,861 - -0.5 602,861 - -1.7 602,862 + -1.4 602,862 + -2.1 602,862 + +0.3 602,863 - -2.8 602,863 - +1.6 602,867 + +0.5 602,867 + -1.2 602,867 + -0.9 602,867 + -1.4 602,867 + +0.8 602,867 + -2.1 602,867 + -1.6 602,868 - +0.8 602,868 - -1.7 602,868 - -2.6 602,868 - -0.2 602,868 - -2.6 602,868 - +1.3 602,868 - +1.4 602,872 + +1.4 602,872 + +0.6 602,873 - -2.3 602,880 + -0.7 602,881 - -0.6 602,890 + +1.0 602,890 + +0.3 602,890 + +0.7 602,890 + +0.2 602,891 - -0.6 602,899 - -1.0 602,899 - -0.4 602,931 + -1.6 602,931 + -0.7 602,934 + +0.0 602,972 + +1.6 602,972 + -1.2 602,972 + -0.4 602,972 + -0.7 602,976 + +0.6 602,976 + -1.2 602,977 - -0.7 602,977 - +0.6 603,036 + -2.2 603,223 + DDA3937_RS02725 0.43 -2.0 603,224 - DDA3937_RS02725 0.43 -1.0 603,289 + DDA3937_RS02725 0.55 -1.0 603,290 - DDA3937_RS02725 0.55 -0.7
Or see this region's nucleotide sequence