Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02655 and DDA3937_RS02660 overlap by 8 nucleotides DDA3937_RS02660 and DDA3937_RS02665 are separated by 164 nucleotides DDA3937_RS02665 and DDA3937_RS02670 are separated by 2 nucleotides DDA3937_RS02670 and DDA3937_RS02675 are separated by 58 nucleotides
DDA3937_RS02655: DDA3937_RS02655 - RNA-directed DNA polymerase, at 588,528 to 590,570
_RS02655
DDA3937_RS02660: DDA3937_RS02660 - RNA-directed DNA polymerase, at 590,563 to 591,906
_RS02660
DDA3937_RS02665: DDA3937_RS02665 - type II toxin-antitoxin system toxin CcdB, at 592,071 to 592,376
_RS02665
DDA3937_RS02670: DDA3937_RS02670 - type II toxin-antitoxin system antitoxin CcdA, at 592,379 to 592,597
_RS02670
DDA3937_RS02675: DDA3937_RS02675 - hypothetical protein, at 592,656 to 593,399
_RS02675
Position (kb) 590
591
592 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 589.692 kb on - strand, within DDA3937_RS02655 at 589.928 kb on - strand, within DDA3937_RS02655 at 589.985 kb on + strand, within DDA3937_RS02655 at 590.052 kb on + strand, within DDA3937_RS02655 at 590.103 kb on - strand, within DDA3937_RS02655 at 590.233 kb on + strand, within DDA3937_RS02655 at 590.238 kb on - strand, within DDA3937_RS02655 at 590.282 kb on + strand, within DDA3937_RS02655 at 590.287 kb on - strand, within DDA3937_RS02655 at 590.291 kb on + strand, within DDA3937_RS02655 at 590.315 kb on + strand, within DDA3937_RS02655 at 590.315 kb on + strand, within DDA3937_RS02655 at 590.321 kb on + strand, within DDA3937_RS02655 at 590.374 kb on - strand at 590.654 kb on - strand at 590.768 kb on + strand, within DDA3937_RS02660 at 590.799 kb on + strand, within DDA3937_RS02660 at 590.876 kb on + strand, within DDA3937_RS02660 at 590.886 kb on + strand, within DDA3937_RS02660 at 591.095 kb on + strand, within DDA3937_RS02660 at 591.099 kb on + strand, within DDA3937_RS02660 at 591.172 kb on - strand, within DDA3937_RS02660 at 591.172 kb on - strand, within DDA3937_RS02660 at 591.200 kb on - strand, within DDA3937_RS02660 at 591.350 kb on - strand, within DDA3937_RS02660 at 591.411 kb on + strand, within DDA3937_RS02660 at 591.621 kb on + strand, within DDA3937_RS02660 at 591.751 kb on - strand, within DDA3937_RS02660 at 591.929 kb on + strand at 591.935 kb on - strand at 591.962 kb on - strand at 591.962 kb on - strand at 592.005 kb on + strand at 592.005 kb on + strand at 592.040 kb on + strand at 592.041 kb on - strand at 592.140 kb on + strand, within DDA3937_RS02665 at 592.236 kb on - strand, within DDA3937_RS02665 at 592.557 kb on + strand, within DDA3937_RS02670 at 592.561 kb on + strand, within DDA3937_RS02670 at 592.562 kb on - strand at 592.620 kb on + strand at 592.629 kb on + strand at 592.632 kb on - strand at 592.633 kb on + strand at 592.634 kb on - strand at 592.658 kb on - strand at 592.697 kb on + strand at 592.697 kb on + strand at 592.697 kb on + strand at 592.698 kb on - strand at 592.698 kb on - strand at 592.698 kb on - strand at 592.699 kb on + strand at 592.700 kb on - strand at 592.763 kb on - strand, within DDA3937_RS02675 at 592.763 kb on - strand, within DDA3937_RS02675 at 592.763 kb on - strand, within DDA3937_RS02675 at 592.822 kb on + strand, within DDA3937_RS02675 at 592.822 kb on + strand, within DDA3937_RS02675 at 592.822 kb on + strand, within DDA3937_RS02675 at 592.822 kb on + strand, within DDA3937_RS02675 at 592.823 kb on - strand, within DDA3937_RS02675 at 592.823 kb on - strand, within DDA3937_RS02675 at 592.831 kb on + strand, within DDA3937_RS02675 at 592.831 kb on + strand, within DDA3937_RS02675 at 592.832 kb on - strand, within DDA3937_RS02675 at 592.832 kb on - strand, within DDA3937_RS02675 at 592.875 kb on - strand, within DDA3937_RS02675
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 589,692 - DDA3937_RS02655 0.57 -0.3 589,928 - DDA3937_RS02655 0.69 -1.8 589,985 + DDA3937_RS02655 0.71 +0.3 590,052 + DDA3937_RS02655 0.75 -1.2 590,103 - DDA3937_RS02655 0.77 -0.3 590,233 + DDA3937_RS02655 0.83 +0.7 590,238 - DDA3937_RS02655 0.84 -2.8 590,282 + DDA3937_RS02655 0.86 -0.9 590,287 - DDA3937_RS02655 0.86 -1.8 590,291 + DDA3937_RS02655 0.86 +2.3 590,315 + DDA3937_RS02655 0.87 -2.1 590,315 + DDA3937_RS02655 0.87 +0.6 590,321 + DDA3937_RS02655 0.88 -1.2 590,374 - -1.8 590,654 - -2.0 590,768 + DDA3937_RS02660 0.15 -1.4 590,799 + DDA3937_RS02660 0.18 -2.4 590,876 + DDA3937_RS02660 0.23 -2.2 590,886 + DDA3937_RS02660 0.24 -1.6 591,095 + DDA3937_RS02660 0.40 -2.0 591,099 + DDA3937_RS02660 0.40 -0.7 591,172 - DDA3937_RS02660 0.45 -1.8 591,172 - DDA3937_RS02660 0.45 -2.5 591,200 - DDA3937_RS02660 0.47 -2.3 591,350 - DDA3937_RS02660 0.59 -0.5 591,411 + DDA3937_RS02660 0.63 -0.9 591,621 + DDA3937_RS02660 0.79 -0.7 591,751 - DDA3937_RS02660 0.88 -0.3 591,929 + -1.0 591,935 - +1.0 591,962 - +0.6 591,962 - -2.3 592,005 + -2.7 592,005 + -0.4 592,040 + -0.7 592,041 - -1.1 592,140 + DDA3937_RS02665 0.23 +0.7 592,236 - DDA3937_RS02665 0.54 +0.9 592,557 + DDA3937_RS02670 0.81 +2.4 592,561 + DDA3937_RS02670 0.83 +0.3 592,562 - +3.6 592,620 + -2.8 592,629 + -2.7 592,632 - +1.5 592,633 + -1.0 592,634 - -2.4 592,658 - +0.6 592,697 + -0.7 592,697 + -3.1 592,697 + +3.0 592,698 - -2.1 592,698 - -1.0 592,698 - +1.1 592,699 + -0.4 592,700 - -2.6 592,763 - DDA3937_RS02675 0.14 +1.5 592,763 - DDA3937_RS02675 0.14 +0.7 592,763 - DDA3937_RS02675 0.14 +0.3 592,822 + DDA3937_RS02675 0.22 -1.2 592,822 + DDA3937_RS02675 0.22 -0.4 592,822 + DDA3937_RS02675 0.22 +0.9 592,822 + DDA3937_RS02675 0.22 -2.9 592,823 - DDA3937_RS02675 0.22 -2.2 592,823 - DDA3937_RS02675 0.22 -0.8 592,831 + DDA3937_RS02675 0.24 -1.7 592,831 + DDA3937_RS02675 0.24 +1.2 592,832 - DDA3937_RS02675 0.24 +0.1 592,832 - DDA3937_RS02675 0.24 -1.4 592,875 - DDA3937_RS02675 0.29 -2.3
Or see this region's nucleotide sequence