Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02525 and DDA3937_RS02530 are separated by 234 nucleotides DDA3937_RS02530 and DDA3937_RS02535 overlap by 16 nucleotides DDA3937_RS02535 and DDA3937_RS02540 overlap by 4 nucleotides
DDA3937_RS02525: DDA3937_RS02525 - DUF1868 domain-containing protein, at 558,888 to 559,718
_RS02525
DDA3937_RS02530: DDA3937_RS02530 - acetyltransferase, at 559,953 to 560,633
_RS02530
DDA3937_RS02535: DDA3937_RS02535 - hydroxyisourate hydrolase, at 560,618 to 560,950
_RS02535
DDA3937_RS02540: DDA3937_RS02540 - 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, at 560,947 to 561,447
_RS02540
Position (kb) 560
561 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 559.664 kb on + strand at 559.665 kb on - strand at 559.665 kb on - strand at 559.669 kb on + strand at 559.670 kb on - strand at 559.689 kb on + strand at 559.689 kb on + strand at 559.690 kb on - strand at 559.690 kb on - strand at 559.718 kb on + strand at 559.718 kb on + strand at 559.718 kb on + strand at 559.718 kb on + strand at 559.718 kb on + strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.745 kb on + strand at 559.745 kb on + strand at 559.745 kb on + strand at 559.745 kb on + strand at 559.745 kb on + strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.749 kb on + strand at 559.749 kb on + strand at 559.749 kb on + strand at 559.749 kb on + strand at 559.750 kb on - strand at 559.750 kb on - strand at 559.750 kb on - strand at 559.755 kb on + strand at 559.755 kb on + strand at 559.755 kb on + strand at 559.755 kb on + strand at 559.755 kb on + strand at 559.755 kb on + strand at 559.756 kb on - strand at 559.756 kb on - strand at 559.756 kb on - strand at 559.772 kb on + strand at 559.772 kb on + strand at 559.824 kb on - strand at 559.953 kb on - strand at 559.953 kb on - strand at 559.953 kb on - strand at 560.011 kb on + strand at 560.011 kb on + strand at 560.012 kb on - strand at 560.025 kb on - strand, within DDA3937_RS02530 at 560.061 kb on - strand, within DDA3937_RS02530 at 560.065 kb on + strand, within DDA3937_RS02530 at 560.065 kb on + strand, within DDA3937_RS02530 at 560.066 kb on - strand, within DDA3937_RS02530 at 560.091 kb on + strand, within DDA3937_RS02530 at 560.091 kb on + strand, within DDA3937_RS02530 at 560.091 kb on + strand, within DDA3937_RS02530 at 560.091 kb on + strand, within DDA3937_RS02530 at 560.092 kb on - strand, within DDA3937_RS02530 at 560.092 kb on - strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.098 kb on - strand, within DDA3937_RS02530 at 560.098 kb on - strand, within DDA3937_RS02530 at 560.098 kb on - strand, within DDA3937_RS02530 at 560.098 kb on - strand, within DDA3937_RS02530 at 560.098 kb on - strand, within DDA3937_RS02530 at 560.126 kb on + strand, within DDA3937_RS02530 at 560.220 kb on + strand, within DDA3937_RS02530 at 560.231 kb on + strand, within DDA3937_RS02530 at 560.232 kb on - strand, within DDA3937_RS02530 at 560.232 kb on - strand, within DDA3937_RS02530 at 560.275 kb on + strand, within DDA3937_RS02530 at 560.275 kb on + strand, within DDA3937_RS02530 at 560.275 kb on + strand, within DDA3937_RS02530 at 560.276 kb on - strand, within DDA3937_RS02530 at 560.276 kb on - strand, within DDA3937_RS02530 at 560.276 kb on - strand, within DDA3937_RS02530 at 560.298 kb on - strand, within DDA3937_RS02530 at 560.581 kb on - strand at 560.586 kb on + strand at 560.631 kb on + strand at 560.632 kb on - strand at 560.635 kb on + strand at 560.635 kb on + strand at 560.674 kb on - strand, within DDA3937_RS02535 at 560.718 kb on + strand at 560.718 kb on + strand, within DDA3937_RS02535 at 560.719 kb on - strand, within DDA3937_RS02535 at 560.719 kb on - strand, within DDA3937_RS02535 at 560.719 kb on - strand, within DDA3937_RS02535 at 560.719 kb on - strand, within DDA3937_RS02535 at 560.758 kb on + strand, within DDA3937_RS02535 at 560.776 kb on - strand, within DDA3937_RS02535 at 560.834 kb on - strand, within DDA3937_RS02535 at 560.938 kb on + strand at 560.938 kb on + strand at 560.939 kb on - strand at 560.945 kb on - strand at 560.982 kb on + strand at 561.143 kb on - strand, within DDA3937_RS02540 at 561.392 kb on - strand, within DDA3937_RS02540 at 561.437 kb on - strand at 561.437 kb on - strand at 561.437 kb on - strand at 561.479 kb on + strand at 561.479 kb on + strand at 561.479 kb on + strand at 561.479 kb on + strand at 561.480 kb on - strand at 561.480 kb on - strand at 561.514 kb on + strand at 561.515 kb on - strand at 561.540 kb on - strand at 561.551 kb on + strand at 561.551 kb on + strand at 561.552 kb on - strand at 561.583 kb on - strand at 561.594 kb on + strand at 561.594 kb on + strand at 561.595 kb on - strand at 561.595 kb on - strand at 561.595 kb on - strand at 561.595 kb on - strand at 561.595 kb on - strand at 561.631 kb on - strand at 561.631 kb on - strand at 561.693 kb on + strand at 561.693 kb on + strand at 561.694 kb on - strand at 561.694 kb on - strand at 561.795 kb on - strand at 561.795 kb on - strand at 561.796 kb on + strand at 561.796 kb on + strand at 561.796 kb on + strand at 561.797 kb on - strand at 561.797 kb on - strand at 561.797 kb on - strand at 561.800 kb on + strand at 561.881 kb on + strand at 561.881 kb on + strand at 561.891 kb on + strand at 561.892 kb on - strand at 561.895 kb on + strand at 561.895 kb on + strand at 561.895 kb on + strand at 561.924 kb on + strand at 561.924 kb on + strand at 561.924 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 559,664 + +1.0 559,665 - +1.5 559,665 - +0.3 559,669 + +0.1 559,670 - +1.2 559,689 + -1.2 559,689 + -0.5 559,690 - -0.3 559,690 - +0.4 559,718 + +0.1 559,718 + -2.7 559,718 + -0.5 559,718 + -2.1 559,718 + -2.5 559,719 - -1.3 559,719 - -1.1 559,719 - -2.8 559,719 - -1.2 559,719 - +0.9 559,719 - -1.2 559,719 - +2.2 559,719 - +0.9 559,745 + -1.5 559,745 + -2.2 559,745 + -2.0 559,745 + -2.8 559,745 + -1.5 559,746 - +2.3 559,746 - -0.7 559,746 - +0.6 559,746 - +0.1 559,746 - -0.4 559,746 - +2.0 559,746 - +0.1 559,746 - +2.9 559,746 - +3.1 559,749 + +0.7 559,749 + -4.0 559,749 + -1.7 559,749 + -0.5 559,750 - -2.0 559,750 - +0.1 559,750 - +0.6 559,755 + -1.2 559,755 + -0.0 559,755 + +1.5 559,755 + +0.0 559,755 + -1.5 559,755 + -1.2 559,756 - -0.1 559,756 - +3.1 559,756 - -2.8 559,772 + -1.0 559,772 + -1.0 559,824 - -0.4 559,953 - -2.0 559,953 - +0.8 559,953 - +0.7 560,011 + +0.9 560,011 + +0.9 560,012 - +3.0 560,025 - DDA3937_RS02530 0.11 +1.2 560,061 - DDA3937_RS02530 0.16 -0.3 560,065 + DDA3937_RS02530 0.16 +1.0 560,065 + DDA3937_RS02530 0.16 +0.1 560,066 - DDA3937_RS02530 0.17 +0.8 560,091 + DDA3937_RS02530 0.20 +4.2 560,091 + DDA3937_RS02530 0.20 +0.7 560,091 + DDA3937_RS02530 0.20 -2.0 560,091 + DDA3937_RS02530 0.20 -1.0 560,092 - DDA3937_RS02530 0.20 -0.2 560,092 - DDA3937_RS02530 0.20 +1.8 560,097 + DDA3937_RS02530 0.21 -0.4 560,097 + DDA3937_RS02530 0.21 -1.0 560,097 + DDA3937_RS02530 0.21 -2.7 560,097 + DDA3937_RS02530 0.21 -0.2 560,097 + DDA3937_RS02530 0.21 +2.4 560,097 + DDA3937_RS02530 0.21 -1.2 560,097 + DDA3937_RS02530 0.21 -0.2 560,097 + DDA3937_RS02530 0.21 -0.5 560,098 - DDA3937_RS02530 0.21 +1.0 560,098 - DDA3937_RS02530 0.21 +1.0 560,098 - DDA3937_RS02530 0.21 +3.0 560,098 - DDA3937_RS02530 0.21 -1.7 560,098 - DDA3937_RS02530 0.21 -0.4 560,126 + DDA3937_RS02530 0.25 +1.2 560,220 + DDA3937_RS02530 0.39 -2.1 560,231 + DDA3937_RS02530 0.41 +2.6 560,232 - DDA3937_RS02530 0.41 +0.7 560,232 - DDA3937_RS02530 0.41 +1.4 560,275 + DDA3937_RS02530 0.47 -2.8 560,275 + DDA3937_RS02530 0.47 -1.4 560,275 + DDA3937_RS02530 0.47 -1.8 560,276 - DDA3937_RS02530 0.47 +1.2 560,276 - DDA3937_RS02530 0.47 -0.7 560,276 - DDA3937_RS02530 0.47 +1.1 560,298 - DDA3937_RS02530 0.51 +0.8 560,581 - +0.3 560,586 + +2.3 560,631 + +0.6 560,632 - +0.3 560,635 + -2.5 560,635 + +1.5 560,674 - DDA3937_RS02535 0.17 -2.5 560,718 + -0.7 560,718 + DDA3937_RS02535 0.30 -3.6 560,719 - DDA3937_RS02535 0.30 -1.7 560,719 - DDA3937_RS02535 0.30 +0.4 560,719 - DDA3937_RS02535 0.30 -1.0 560,719 - DDA3937_RS02535 0.30 -3.5 560,758 + DDA3937_RS02535 0.42 +0.8 560,776 - DDA3937_RS02535 0.47 +0.6 560,834 - DDA3937_RS02535 0.65 -0.5 560,938 + +1.8 560,938 + -2.4 560,939 - +2.3 560,945 - -2.1 560,982 + -1.5 561,143 - DDA3937_RS02540 0.39 -0.5 561,392 - DDA3937_RS02540 0.89 -1.7 561,437 - -0.6 561,437 - +0.7 561,437 - +1.7 561,479 + -0.1 561,479 + -1.8 561,479 + +1.4 561,479 + -0.6 561,480 - +1.6 561,480 - +1.2 561,514 + -0.1 561,515 - -0.5 561,540 - +0.0 561,551 + +1.8 561,551 + +1.5 561,552 - +0.3 561,583 - +0.2 561,594 + -2.0 561,594 + -0.4 561,595 - -1.7 561,595 - -1.2 561,595 - +2.1 561,595 - -2.4 561,595 - +1.3 561,631 - -4.2 561,631 - -1.5 561,693 + +1.3 561,693 + +1.4 561,694 - -1.8 561,694 - +1.0 561,795 - +1.8 561,795 - +1.9 561,796 + +2.0 561,796 + -1.0 561,796 + +0.6 561,797 - -1.7 561,797 - +0.6 561,797 - +1.0 561,800 + -2.2 561,881 + -2.4 561,881 + +0.0 561,891 + +0.0 561,892 - +1.5 561,895 + -2.2 561,895 + -2.5 561,895 + -0.5 561,924 + +0.8 561,924 + +0.7 561,924 + -0.7
Or see this region's nucleotide sequence