Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02180

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS02175 and DDA3937_RS02180 are separated by 43 nucleotidesDDA3937_RS02180 and DDA3937_RS02185 are separated by 50 nucleotides DDA3937_RS02175: DDA3937_RS02175 - D-ribose ABC transporter substrate-binding protein, at 482,815 to 483,750 _RS02175 DDA3937_RS02180: DDA3937_RS02180 - DUF2291 domain-containing protein, at 483,794 to 484,426 _RS02180 DDA3937_RS02185: DDA3937_RS02185 - sugar ABC transporter ATP-binding protein, at 484,477 to 486,036 _RS02185 Position (kb) 483 484 485Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 482.837 kb on + strandat 482.838 kb on - strandat 482.838 kb on - strandat 482.847 kb on + strandat 482.929 kb on + strand, within DDA3937_RS02175at 482.929 kb on + strand, within DDA3937_RS02175at 482.929 kb on + strand, within DDA3937_RS02175at 482.929 kb on + strand, within DDA3937_RS02175at 482.932 kb on + strand, within DDA3937_RS02175at 482.933 kb on - strand, within DDA3937_RS02175at 482.933 kb on - strand, within DDA3937_RS02175at 482.933 kb on - strand, within DDA3937_RS02175at 482.980 kb on + strand, within DDA3937_RS02175at 482.980 kb on + strand, within DDA3937_RS02175at 482.981 kb on - strand, within DDA3937_RS02175at 482.981 kb on - strand, within DDA3937_RS02175at 482.982 kb on + strand, within DDA3937_RS02175at 482.982 kb on + strand, within DDA3937_RS02175at 482.983 kb on - strand, within DDA3937_RS02175at 483.059 kb on + strand, within DDA3937_RS02175at 483.265 kb on + strand, within DDA3937_RS02175at 483.265 kb on + strand, within DDA3937_RS02175at 483.265 kb on + strand, within DDA3937_RS02175at 483.265 kb on + strand, within DDA3937_RS02175at 483.266 kb on - strand, within DDA3937_RS02175at 483.266 kb on - strand, within DDA3937_RS02175at 483.643 kb on + strand, within DDA3937_RS02175at 483.643 kb on + strand, within DDA3937_RS02175at 483.643 kb on + strand, within DDA3937_RS02175at 483.643 kb on + strand, within DDA3937_RS02175at 483.644 kb on - strand, within DDA3937_RS02175at 483.644 kb on - strand, within DDA3937_RS02175at 483.644 kb on - strand, within DDA3937_RS02175at 483.644 kb on - strand, within DDA3937_RS02175at 483.644 kb on - strand, within DDA3937_RS02175at 483.703 kb on - strandat 483.703 kb on - strandat 483.703 kb on - strandat 483.793 kb on + strandat 483.793 kb on + strandat 483.793 kb on + strandat 483.793 kb on + strandat 483.793 kb on + strandat 483.794 kb on - strandat 483.794 kb on - strandat 483.794 kb on - strandat 483.907 kb on + strand, within DDA3937_RS02180at 484.078 kb on - strand, within DDA3937_RS02180at 484.167 kb on + strand, within DDA3937_RS02180at 484.167 kb on + strand, within DDA3937_RS02180at 484.167 kb on + strand, within DDA3937_RS02180at 484.168 kb on - strand, within DDA3937_RS02180at 484.168 kb on - strand, within DDA3937_RS02180at 484.168 kb on - strand, within DDA3937_RS02180at 484.168 kb on - strand, within DDA3937_RS02180at 484.227 kb on - strand, within DDA3937_RS02180at 484.227 kb on - strand, within DDA3937_RS02180at 484.443 kb on - strandat 484.485 kb on + strandat 484.486 kb on - strandat 484.486 kb on - strandat 484.538 kb on + strandat 484.538 kb on + strandat 484.538 kb on + strandat 484.538 kb on + strandat 484.539 kb on - strandat 484.539 kb on - strandat 484.543 kb on - strandat 484.568 kb on + strandat 484.568 kb on + strandat 484.568 kb on + strandat 484.569 kb on - strandat 484.569 kb on - strandat 484.569 kb on - strandat 484.569 kb on - strandat 484.604 kb on - strandat 484.612 kb on + strandat 484.613 kb on - strandat 484.620 kb on + strandat 484.621 kb on - strandat 484.621 kb on - strandat 484.933 kb on + strand, within DDA3937_RS02185at 485.113 kb on + strand, within DDA3937_RS02185at 485.113 kb on + strand, within DDA3937_RS02185at 485.113 kb on + strand, within DDA3937_RS02185at 485.113 kb on + strand, within DDA3937_RS02185at 485.113 kb on + strand, within DDA3937_RS02185at 485.113 kb on + strand, within DDA3937_RS02185at 485.113 kb on + strand, within DDA3937_RS02185at 485.113 kb on + strand, within DDA3937_RS02185at 485.114 kb on - strand, within DDA3937_RS02185at 485.114 kb on - strandat 485.114 kb on - strand, within DDA3937_RS02185at 485.114 kb on - strand, within DDA3937_RS02185at 485.114 kb on - strand, within DDA3937_RS02185at 485.114 kb on - strand, within DDA3937_RS02185at 485.114 kb on - strand, within DDA3937_RS02185at 485.114 kb on - strand, within DDA3937_RS02185at 485.117 kb on - strand, within DDA3937_RS02185at 485.266 kb on + strand, within DDA3937_RS02185at 485.392 kb on + strand, within DDA3937_RS02185at 485.392 kb on + strand, within DDA3937_RS02185at 485.392 kb on + strand, within DDA3937_RS02185at 485.392 kb on + strand, within DDA3937_RS02185at 485.393 kb on - strand, within DDA3937_RS02185at 485.393 kb on - strand, within DDA3937_RS02185at 485.393 kb on - strand, within DDA3937_RS02185at 485.393 kb on - strand, within DDA3937_RS02185at 485.393 kb on - strand, within DDA3937_RS02185at 485.393 kb on - strand, within DDA3937_RS02185

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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482,837 + -0.2
482,838 - +0.6
482,838 - -1.9
482,847 + -1.2
482,929 + DDA3937_RS02175 0.12 -0.4
482,929 + DDA3937_RS02175 0.12 +0.9
482,929 + DDA3937_RS02175 0.12 +0.1
482,929 + DDA3937_RS02175 0.12 +0.5
482,932 + DDA3937_RS02175 0.12 +2.3
482,933 - DDA3937_RS02175 0.13 +0.9
482,933 - DDA3937_RS02175 0.13 -0.7
482,933 - DDA3937_RS02175 0.13 -2.3
482,980 + DDA3937_RS02175 0.18 -1.7
482,980 + DDA3937_RS02175 0.18 -1.5
482,981 - DDA3937_RS02175 0.18 +1.6
482,981 - DDA3937_RS02175 0.18 -1.9
482,982 + DDA3937_RS02175 0.18 +0.9
482,982 + DDA3937_RS02175 0.18 -1.1
482,983 - DDA3937_RS02175 0.18 +0.1
483,059 + DDA3937_RS02175 0.26 -1.4
483,265 + DDA3937_RS02175 0.48 -2.8
483,265 + DDA3937_RS02175 0.48 +0.9
483,265 + DDA3937_RS02175 0.48 +0.1
483,265 + DDA3937_RS02175 0.48 -0.5
483,266 - DDA3937_RS02175 0.48 -1.4
483,266 - DDA3937_RS02175 0.48 -0.0
483,643 + DDA3937_RS02175 0.88 +1.3
483,643 + DDA3937_RS02175 0.88 +1.6
483,643 + DDA3937_RS02175 0.88 +1.5
483,643 + DDA3937_RS02175 0.88 -0.1
483,644 - DDA3937_RS02175 0.89 +0.1
483,644 - DDA3937_RS02175 0.89 -2.9
483,644 - DDA3937_RS02175 0.89 +0.0
483,644 - DDA3937_RS02175 0.89 -2.5
483,644 - DDA3937_RS02175 0.89 -0.6
483,703 - -0.4
483,703 - +0.2
483,703 - -3.7
483,793 + +1.6
483,793 + -2.1
483,793 + -3.8
483,793 + -0.1
483,793 + -1.2
483,794 - -1.2
483,794 - -3.0
483,794 - -2.5
483,907 + DDA3937_RS02180 0.18 +0.1
484,078 - DDA3937_RS02180 0.45 -0.0
484,167 + DDA3937_RS02180 0.59 +1.1
484,167 + DDA3937_RS02180 0.59 +2.0
484,167 + DDA3937_RS02180 0.59 +0.1
484,168 - DDA3937_RS02180 0.59 +1.0
484,168 - DDA3937_RS02180 0.59 +0.6
484,168 - DDA3937_RS02180 0.59 +0.2
484,168 - DDA3937_RS02180 0.59 +2.4
484,227 - DDA3937_RS02180 0.68 +0.2
484,227 - DDA3937_RS02180 0.68 -0.3
484,443 - -0.7
484,485 + +0.8
484,486 - -1.0
484,486 - -0.6
484,538 + +1.1
484,538 + -1.5
484,538 + -0.7
484,538 + -0.9
484,539 - +2.4
484,539 - +2.6
484,543 - -0.2
484,568 + +1.6
484,568 + +1.9
484,568 + +1.2
484,569 - -2.4
484,569 - +0.8
484,569 - -1.3
484,569 - -2.4
484,604 - +0.6
484,612 + +0.6
484,613 - +3.0
484,620 + -0.6
484,621 - +0.8
484,621 - +1.7
484,933 + DDA3937_RS02185 0.29 +0.6
485,113 + DDA3937_RS02185 0.41 -2.1
485,113 + DDA3937_RS02185 0.41 -0.1
485,113 + DDA3937_RS02185 0.41 -3.8
485,113 + DDA3937_RS02185 0.41 +1.8
485,113 + DDA3937_RS02185 0.41 -1.4
485,113 + DDA3937_RS02185 0.41 +0.3
485,113 + DDA3937_RS02185 0.41 -0.6
485,113 + DDA3937_RS02185 0.41 -1.7
485,114 - DDA3937_RS02185 0.41 -0.8
485,114 - -0.4
485,114 - DDA3937_RS02185 0.41 -3.6
485,114 - DDA3937_RS02185 0.41 -3.1
485,114 - DDA3937_RS02185 0.41 +0.6
485,114 - DDA3937_RS02185 0.41 -2.7
485,114 - DDA3937_RS02185 0.41 -1.7
485,114 - DDA3937_RS02185 0.41 -0.7
485,117 - DDA3937_RS02185 0.41 +2.3
485,266 + DDA3937_RS02185 0.51 +1.9
485,392 + DDA3937_RS02185 0.59 -0.0
485,392 + DDA3937_RS02185 0.59 +1.5
485,392 + DDA3937_RS02185 0.59 +0.6
485,392 + DDA3937_RS02185 0.59 -1.4
485,393 - DDA3937_RS02185 0.59 -3.4
485,393 - DDA3937_RS02185 0.59 -1.4
485,393 - DDA3937_RS02185 0.59 -3.2
485,393 - DDA3937_RS02185 0.59 +2.1
485,393 - DDA3937_RS02185 0.59 +0.2
485,393 - DDA3937_RS02185 0.59 -0.7

Or see this region's nucleotide sequence