Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02070 and DDA3937_RS02075 are separated by 10 nucleotides DDA3937_RS02075 and DDA3937_RS02080 are separated by 444 nucleotides DDA3937_RS02080 and DDA3937_RS02085 are separated by 471 nucleotides
DDA3937_RS02070: DDA3937_RS02070 - methyltransferase domain-containing protein, at 464,868 to 465,587
_RS02070
DDA3937_RS02075: DDA3937_RS02075 - YjhX family toxin, at 465,598 to 465,855
_RS02075
DDA3937_RS02080: DDA3937_RS02080 - hypothetical protein, at 466,300 to 466,638
_RS02080
DDA3937_RS02085: DDA3937_RS02085 - hypothetical protein, at 467,110 to 467,913
_RS02085
Position (kb) 466
467 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 465.369 kb on + strand, within DDA3937_RS02070 at 465.370 kb on - strand, within DDA3937_RS02070 at 465.370 kb on - strand, within DDA3937_RS02070 at 465.370 kb on - strand, within DDA3937_RS02070 at 465.370 kb on - strand, within DDA3937_RS02070 at 465.370 kb on - strand, within DDA3937_RS02070 at 465.370 kb on - strand, within DDA3937_RS02070 at 465.390 kb on + strand, within DDA3937_RS02070 at 465.391 kb on - strand, within DDA3937_RS02070 at 465.391 kb on - strand, within DDA3937_RS02070 at 465.397 kb on + strand, within DDA3937_RS02070 at 465.479 kb on + strand, within DDA3937_RS02070 at 465.479 kb on + strand, within DDA3937_RS02070 at 465.479 kb on + strand, within DDA3937_RS02070 at 465.479 kb on + strand, within DDA3937_RS02070 at 465.480 kb on - strand, within DDA3937_RS02070 at 465.480 kb on - strand, within DDA3937_RS02070 at 465.480 kb on - strand, within DDA3937_RS02070 at 465.480 kb on - strand, within DDA3937_RS02070 at 465.480 kb on - strand, within DDA3937_RS02070 at 465.480 kb on - strand, within DDA3937_RS02070 at 465.480 kb on - strand, within DDA3937_RS02070 at 465.497 kb on + strand, within DDA3937_RS02070 at 465.498 kb on - strand, within DDA3937_RS02070 at 465.561 kb on - strand at 465.570 kb on - strand at 465.570 kb on - strand at 465.570 kb on - strand at 465.570 kb on - strand at 465.572 kb on + strand at 465.572 kb on + strand at 465.572 kb on + strand at 465.573 kb on - strand at 465.573 kb on - strand at 465.573 kb on - strand at 465.575 kb on + strand at 465.576 kb on - strand at 465.581 kb on + strand at 465.581 kb on + strand at 465.582 kb on - strand at 465.582 kb on - strand at 465.582 kb on - strand at 465.582 kb on - strand at 465.582 kb on - strand at 465.594 kb on + strand at 465.594 kb on + strand at 465.594 kb on + strand at 465.594 kb on + strand at 465.595 kb on - strand at 465.595 kb on - strand at 465.595 kb on - strand at 465.748 kb on - strand, within DDA3937_RS02075 at 465.748 kb on - strand, within DDA3937_RS02075 at 465.749 kb on + strand, within DDA3937_RS02075 at 465.749 kb on + strand, within DDA3937_RS02075 at 465.749 kb on + strand, within DDA3937_RS02075 at 465.749 kb on + strand, within DDA3937_RS02075 at 465.749 kb on + strand, within DDA3937_RS02075 at 465.749 kb on + strand, within DDA3937_RS02075 at 465.749 kb on + strand, within DDA3937_RS02075 at 465.750 kb on - strand, within DDA3937_RS02075 at 465.750 kb on - strand, within DDA3937_RS02075 at 465.750 kb on - strand, within DDA3937_RS02075 at 465.769 kb on - strand, within DDA3937_RS02075 at 465.787 kb on + strand, within DDA3937_RS02075 at 465.787 kb on + strand, within DDA3937_RS02075 at 465.788 kb on - strand, within DDA3937_RS02075 at 465.788 kb on - strand, within DDA3937_RS02075 at 465.823 kb on + strand, within DDA3937_RS02075 at 465.823 kb on + strand, within DDA3937_RS02075 at 465.823 kb on + strand at 465.824 kb on - strand, within DDA3937_RS02075 at 465.824 kb on - strand, within DDA3937_RS02075 at 465.828 kb on + strand, within DDA3937_RS02075 at 465.828 kb on + strand, within DDA3937_RS02075 at 465.828 kb on + strand, within DDA3937_RS02075 at 465.828 kb on + strand, within DDA3937_RS02075 at 465.828 kb on + strand, within DDA3937_RS02075 at 465.828 kb on + strand, within DDA3937_RS02075 at 465.828 kb on + strand, within DDA3937_RS02075 at 465.828 kb on + strand, within DDA3937_RS02075 at 465.828 kb on + strand, within DDA3937_RS02075 at 465.828 kb on + strand, within DDA3937_RS02075 at 465.828 kb on + strand, within DDA3937_RS02075 at 465.828 kb on + strand, within DDA3937_RS02075 at 465.829 kb on - strand, within DDA3937_RS02075 at 465.829 kb on - strand, within DDA3937_RS02075 at 465.829 kb on - strand, within DDA3937_RS02075 at 465.829 kb on - strand, within DDA3937_RS02075 at 465.829 kb on - strand, within DDA3937_RS02075 at 465.829 kb on - strand, within DDA3937_RS02075 at 465.829 kb on - strand, within DDA3937_RS02075 at 465.847 kb on + strand at 465.848 kb on - strand at 465.855 kb on + strand at 465.855 kb on + strand at 465.967 kb on + strand at 465.968 kb on - strand at 465.978 kb on + strand at 465.978 kb on + strand at 465.978 kb on + strand at 465.978 kb on + strand at 465.978 kb on + strand at 465.978 kb on + strand at 465.979 kb on - strand at 465.979 kb on - strand at 466.005 kb on - strand at 466.022 kb on + strand at 466.022 kb on + strand at 466.022 kb on + strand at 466.023 kb on - strand at 466.023 kb on - strand at 466.111 kb on + strand at 466.112 kb on - strand at 466.153 kb on - strand at 466.153 kb on - strand at 466.155 kb on + strand at 466.155 kb on + strand at 466.155 kb on + strand at 466.156 kb on - strand at 466.156 kb on - strand at 466.156 kb on - strand at 466.156 kb on - strand at 466.156 kb on - strand at 466.186 kb on + strand at 466.186 kb on + strand at 466.187 kb on - strand at 466.187 kb on - strand at 466.189 kb on + strand at 466.189 kb on + strand at 466.189 kb on + strand at 466.189 kb on + strand at 466.190 kb on - strand at 466.190 kb on - strand at 466.216 kb on + strand at 466.216 kb on + strand at 466.216 kb on + strand at 466.216 kb on + strand at 466.216 kb on + strand at 466.216 kb on + strand at 466.216 kb on + strand at 466.216 kb on + strand at 466.217 kb on - strand at 466.217 kb on - strand at 466.217 kb on - strand at 466.217 kb on - strand at 466.217 kb on - strand at 466.217 kb on - strand at 466.217 kb on - strand at 466.217 kb on - strand at 466.217 kb on - strand at 466.218 kb on + strand at 466.218 kb on + strand at 466.218 kb on + strand at 466.218 kb on + strand at 466.218 kb on + strand at 466.219 kb on - strand at 466.219 kb on - strand at 466.219 kb on - strand at 466.219 kb on - strand at 466.219 kb on - strand at 466.219 kb on - strand at 466.219 kb on - strand at 466.220 kb on + strand at 466.220 kb on + strand at 466.220 kb on + strand at 466.220 kb on + strand at 466.220 kb on + strand at 466.220 kb on + strand at 466.220 kb on + strand at 466.220 kb on + strand at 466.220 kb on + strand at 466.220 kb on + strand at 466.221 kb on - strand at 466.221 kb on - strand at 466.221 kb on - strand at 466.221 kb on - strand at 466.221 kb on - strand at 466.221 kb on - strand at 466.221 kb on - strand at 466.221 kb on - strand at 466.221 kb on - strand at 466.221 kb on - strand at 466.221 kb on - strand at 466.221 kb on - strand at 466.221 kb on - strand at 466.246 kb on - strand at 466.246 kb on - strand at 466.301 kb on + strand at 466.301 kb on + strand at 466.301 kb on + strand at 466.301 kb on + strand at 466.302 kb on - strand at 466.311 kb on - strand at 466.318 kb on + strand at 466.319 kb on - strand at 466.562 kb on + strand, within DDA3937_RS02080 at 466.642 kb on + strand at 466.642 kb on + strand at 466.642 kb on + strand at 466.642 kb on + strand at 466.642 kb on + strand at 466.642 kb on + strand at 466.643 kb on - strand at 466.643 kb on - strand at 466.643 kb on - strand at 466.657 kb on + strand at 466.665 kb on + strand at 466.665 kb on + strand at 466.665 kb on + strand at 466.665 kb on + strand at 466.665 kb on + strand at 466.665 kb on + strand at 466.665 kb on + strand at 466.665 kb on + strand at 466.665 kb on + strand at 466.665 kb on + strand at 466.665 kb on + strand at 466.666 kb on - strand at 466.666 kb on - strand at 466.666 kb on - strand at 466.666 kb on - strand at 466.693 kb on + strand at 466.694 kb on - strand at 466.694 kb on - strand at 466.730 kb on + strand at 466.730 kb on + strand at 466.774 kb on + strand at 466.874 kb on + strand at 466.874 kb on + strand at 466.875 kb on - strand at 466.875 kb on - strand at 466.914 kb on + strand at 466.915 kb on - strand at 467.040 kb on - strand at 467.073 kb on + strand at 467.073 kb on + strand at 467.074 kb on - strand at 467.074 kb on - strand at 467.090 kb on + strand at 467.090 kb on + strand at 467.090 kb on + strand at 467.090 kb on + strand at 467.090 kb on + strand at 467.090 kb on + strand at 467.090 kb on + strand at 467.090 kb on + strand at 467.090 kb on + strand at 467.090 kb on + strand at 467.090 kb on + strand at 467.091 kb on - strand at 467.091 kb on - strand at 467.091 kb on - strand at 467.091 kb on - strand at 467.091 kb on - strand at 467.091 kb on - strand at 467.091 kb on - strand at 467.091 kb on - strand at 467.145 kb on + strand at 467.194 kb on - strand, within DDA3937_RS02085 at 467.198 kb on - strand, within DDA3937_RS02085 at 467.198 kb on - strand, within DDA3937_RS02085 at 467.198 kb on - strand, within DDA3937_RS02085 at 467.198 kb on - strand, within DDA3937_RS02085 at 467.198 kb on - strand, within DDA3937_RS02085 at 467.211 kb on - strand, within DDA3937_RS02085 at 467.297 kb on - strand, within DDA3937_RS02085 at 467.429 kb on + strand, within DDA3937_RS02085 at 467.429 kb on + strand, within DDA3937_RS02085 at 467.429 kb on + strand, within DDA3937_RS02085 at 467.430 kb on - strand, within DDA3937_RS02085 at 467.430 kb on - strand, within DDA3937_RS02085 at 467.430 kb on - strand, within DDA3937_RS02085 at 467.430 kb on - strand, within DDA3937_RS02085 at 467.430 kb on - strand, within DDA3937_RS02085 at 467.447 kb on - strand, within DDA3937_RS02085 at 467.447 kb on - strand, within DDA3937_RS02085 at 467.447 kb on - strand, within DDA3937_RS02085 at 467.493 kb on + strand, within DDA3937_RS02085 at 467.594 kb on - strand, within DDA3937_RS02085
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 465,369 + DDA3937_RS02070 0.70 -1.0 465,370 - DDA3937_RS02070 0.70 +0.9 465,370 - DDA3937_RS02070 0.70 -0.6 465,370 - DDA3937_RS02070 0.70 +1.8 465,370 - DDA3937_RS02070 0.70 -0.3 465,370 - DDA3937_RS02070 0.70 -2.4 465,370 - DDA3937_RS02070 0.70 -1.0 465,390 + DDA3937_RS02070 0.72 -2.0 465,391 - DDA3937_RS02070 0.73 -0.9 465,391 - DDA3937_RS02070 0.73 -2.0 465,397 + DDA3937_RS02070 0.73 -0.5 465,479 + DDA3937_RS02070 0.85 -1.7 465,479 + DDA3937_RS02070 0.85 -0.2 465,479 + DDA3937_RS02070 0.85 -1.5 465,479 + DDA3937_RS02070 0.85 -1.7 465,480 - DDA3937_RS02070 0.85 +1.5 465,480 - DDA3937_RS02070 0.85 +1.3 465,480 - DDA3937_RS02070 0.85 +0.4 465,480 - DDA3937_RS02070 0.85 -1.5 465,480 - DDA3937_RS02070 0.85 -0.4 465,480 - DDA3937_RS02070 0.85 +1.3 465,480 - DDA3937_RS02070 0.85 +0.6 465,497 + DDA3937_RS02070 0.87 -1.3 465,498 - DDA3937_RS02070 0.88 -0.3 465,561 - +3.7 465,570 - -1.1 465,570 - -0.0 465,570 - -1.3 465,570 - -1.3 465,572 + -0.8 465,572 + +0.4 465,572 + +2.5 465,573 - -1.6 465,573 - -1.8 465,573 - +1.2 465,575 + -1.3 465,576 - -0.5 465,581 + +1.7 465,581 + +1.4 465,582 - +1.3 465,582 - +1.3 465,582 - +0.4 465,582 - +0.1 465,582 - -1.1 465,594 + -1.4 465,594 + +0.2 465,594 + +2.1 465,594 + -2.3 465,595 - -2.6 465,595 - +1.5 465,595 - +0.8 465,748 - DDA3937_RS02075 0.58 +0.2 465,748 - DDA3937_RS02075 0.58 +1.5 465,749 + DDA3937_RS02075 0.59 +1.0 465,749 + DDA3937_RS02075 0.59 -0.4 465,749 + DDA3937_RS02075 0.59 -1.7 465,749 + DDA3937_RS02075 0.59 +2.7 465,749 + DDA3937_RS02075 0.59 +1.3 465,749 + DDA3937_RS02075 0.59 -0.5 465,749 + DDA3937_RS02075 0.59 +0.8 465,750 - DDA3937_RS02075 0.59 +2.2 465,750 - DDA3937_RS02075 0.59 +0.7 465,750 - DDA3937_RS02075 0.59 +2.1 465,769 - DDA3937_RS02075 0.66 +0.9 465,787 + DDA3937_RS02075 0.73 +0.7 465,787 + DDA3937_RS02075 0.73 +1.9 465,788 - DDA3937_RS02075 0.74 -2.6 465,788 - DDA3937_RS02075 0.74 -3.0 465,823 + DDA3937_RS02075 0.87 -0.2 465,823 + DDA3937_RS02075 0.87 +3.2 465,823 + +0.1 465,824 - DDA3937_RS02075 0.88 +0.6 465,824 - DDA3937_RS02075 0.88 +0.5 465,828 + DDA3937_RS02075 0.89 -1.8 465,828 + DDA3937_RS02075 0.89 -2.3 465,828 + DDA3937_RS02075 0.89 -0.8 465,828 + DDA3937_RS02075 0.89 -1.6 465,828 + DDA3937_RS02075 0.89 +0.2 465,828 + DDA3937_RS02075 0.89 +0.5 465,828 + DDA3937_RS02075 0.89 +1.1 465,828 + DDA3937_RS02075 0.89 +0.7 465,828 + DDA3937_RS02075 0.89 -0.5 465,828 + DDA3937_RS02075 0.89 -0.1 465,828 + DDA3937_RS02075 0.89 +1.5 465,828 + DDA3937_RS02075 0.89 -1.7 465,829 - DDA3937_RS02075 0.90 -2.0 465,829 - DDA3937_RS02075 0.90 +2.4 465,829 - DDA3937_RS02075 0.90 +2.0 465,829 - DDA3937_RS02075 0.90 -0.1 465,829 - DDA3937_RS02075 0.90 +1.1 465,829 - DDA3937_RS02075 0.90 -0.3 465,829 - DDA3937_RS02075 0.90 -0.9 465,847 + -0.2 465,848 - -3.0 465,855 + +0.3 465,855 + -0.1 465,967 + +1.0 465,968 - +0.7 465,978 + -0.1 465,978 + +1.8 465,978 + +1.1 465,978 + -0.9 465,978 + -2.1 465,978 + +2.3 465,979 - +1.2 465,979 - -0.2 466,005 - -0.2 466,022 + +2.3 466,022 + -0.6 466,022 + +0.5 466,023 - +0.6 466,023 - +0.5 466,111 + -2.2 466,112 - -2.5 466,153 - +1.2 466,153 - +3.2 466,155 + -0.9 466,155 + +0.3 466,155 + -1.1 466,156 - -1.5 466,156 - +1.6 466,156 - -0.2 466,156 - -3.5 466,156 - -0.2 466,186 + +1.5 466,186 + -1.7 466,187 - -3.9 466,187 - -2.3 466,189 + +1.9 466,189 + -3.0 466,189 + -2.7 466,189 + +3.3 466,190 - -2.7 466,190 - -2.0 466,216 + +0.6 466,216 + +0.1 466,216 + -3.5 466,216 + -2.3 466,216 + +0.7 466,216 + +0.1 466,216 + -0.4 466,216 + +0.1 466,217 - +1.0 466,217 - +1.7 466,217 - +2.4 466,217 - -2.2 466,217 - -1.7 466,217 - +1.7 466,217 - -2.9 466,217 - +1.1 466,217 - -0.8 466,218 + -2.1 466,218 + -3.4 466,218 + +0.1 466,218 + -0.8 466,218 + +0.5 466,219 - -0.4 466,219 - +0.5 466,219 - -0.4 466,219 - +0.6 466,219 - -1.5 466,219 - -2.4 466,219 - +0.5 466,220 + +0.3 466,220 + -0.3 466,220 + +2.0 466,220 + -0.3 466,220 + +1.1 466,220 + -1.9 466,220 + -0.3 466,220 + -3.3 466,220 + +0.0 466,220 + +0.5 466,221 - +0.5 466,221 - -0.7 466,221 - -4.2 466,221 - -1.8 466,221 - -1.3 466,221 - -2.7 466,221 - -3.0 466,221 - -0.3 466,221 - -2.0 466,221 - -2.8 466,221 - -1.1 466,221 - +0.3 466,221 - +1.4 466,246 - +1.4 466,246 - +2.5 466,301 + +0.2 466,301 + +1.3 466,301 + +1.7 466,301 + -0.4 466,302 - -0.3 466,311 - -0.1 466,318 + -2.4 466,319 - -2.2 466,562 + DDA3937_RS02080 0.77 +1.7 466,642 + +0.1 466,642 + +1.2 466,642 + -0.0 466,642 + -1.7 466,642 + +0.6 466,642 + +0.5 466,643 - -0.2 466,643 - -2.8 466,643 - -0.7 466,657 + -2.3 466,665 + +1.3 466,665 + -1.5 466,665 + +1.4 466,665 + -3.4 466,665 + -2.1 466,665 + -2.7 466,665 + +0.3 466,665 + -0.3 466,665 + +0.6 466,665 + +2.3 466,665 + +0.8 466,666 - +0.5 466,666 - -0.7 466,666 - -0.3 466,666 - -0.2 466,693 + +0.6 466,694 - -1.7 466,694 - +3.7 466,730 + -0.7 466,730 + -1.9 466,774 + +0.3 466,874 + -1.7 466,874 + +0.4 466,875 - +1.2 466,875 - +0.7 466,914 + +0.8 466,915 - +1.0 467,040 - -1.8 467,073 + -1.3 467,073 + -2.2 467,074 - -0.9 467,074 - -2.2 467,090 + -3.7 467,090 + -0.2 467,090 + +0.2 467,090 + -1.2 467,090 + -0.1 467,090 + +0.9 467,090 + -0.3 467,090 + +0.1 467,090 + -1.8 467,090 + +0.3 467,090 + +2.4 467,091 - -2.9 467,091 - -3.0 467,091 - -0.5 467,091 - -3.4 467,091 - +1.7 467,091 - -1.3 467,091 - -2.2 467,091 - -1.3 467,145 + -3.2 467,194 - DDA3937_RS02085 0.10 +1.6 467,198 - DDA3937_RS02085 0.11 -0.3 467,198 - DDA3937_RS02085 0.11 +0.8 467,198 - DDA3937_RS02085 0.11 -2.2 467,198 - DDA3937_RS02085 0.11 -2.0 467,198 - DDA3937_RS02085 0.11 +1.6 467,211 - DDA3937_RS02085 0.13 -1.1 467,297 - DDA3937_RS02085 0.23 -1.6 467,429 + DDA3937_RS02085 0.40 -1.7 467,429 + DDA3937_RS02085 0.40 -2.6 467,429 + DDA3937_RS02085 0.40 +0.6 467,430 - DDA3937_RS02085 0.40 -2.2 467,430 - DDA3937_RS02085 0.40 -0.7 467,430 - DDA3937_RS02085 0.40 -1.8 467,430 - DDA3937_RS02085 0.40 -2.0 467,430 - DDA3937_RS02085 0.40 -2.0 467,447 - DDA3937_RS02085 0.42 +2.7 467,447 - DDA3937_RS02085 0.42 +0.3 467,447 - DDA3937_RS02085 0.42 -1.8 467,493 + DDA3937_RS02085 0.48 -3.3 467,594 - DDA3937_RS02085 0.60 -1.7
Or see this region's nucleotide sequence