Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02015 and DDA3937_RS02020 are separated by 228 nucleotides DDA3937_RS02020 and DDA3937_RS02025 overlap by 20 nucleotides
DDA3937_RS02015: DDA3937_RS02015 - integrase arm-type DNA-binding domain-containing protein, at 451,957 to 453,219
_RS02015
DDA3937_RS02020: DDA3937_RS02020 - DEAD/DEAH box helicase, at 453,448 to 456,006
_RS02020
DDA3937_RS02025: DDA3937_RS02025 - DUF1837 domain-containing protein, at 455,987 to 457,027
_RS02025
Position (kb) 453
454
455
456
457 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 452.475 kb on + strand, within DDA3937_RS02015 at 452.482 kb on + strand, within DDA3937_RS02015 at 452.500 kb on + strand, within DDA3937_RS02015 at 452.500 kb on + strand, within DDA3937_RS02015 at 452.500 kb on + strand, within DDA3937_RS02015 at 452.500 kb on + strand, within DDA3937_RS02015 at 452.501 kb on - strand, within DDA3937_RS02015 at 452.501 kb on - strand, within DDA3937_RS02015 at 452.501 kb on - strand, within DDA3937_RS02015 at 452.501 kb on - strand, within DDA3937_RS02015 at 452.502 kb on + strand, within DDA3937_RS02015 at 452.503 kb on - strand, within DDA3937_RS02015 at 452.503 kb on - strand, within DDA3937_RS02015 at 452.503 kb on - strand, within DDA3937_RS02015 at 452.511 kb on + strand, within DDA3937_RS02015 at 452.563 kb on + strand, within DDA3937_RS02015 at 452.640 kb on + strand, within DDA3937_RS02015 at 452.640 kb on + strand, within DDA3937_RS02015 at 452.640 kb on + strand, within DDA3937_RS02015 at 452.641 kb on - strand, within DDA3937_RS02015 at 452.641 kb on - strand, within DDA3937_RS02015 at 452.672 kb on + strand, within DDA3937_RS02015 at 452.672 kb on + strand, within DDA3937_RS02015 at 452.672 kb on + strand, within DDA3937_RS02015 at 452.672 kb on + strand, within DDA3937_RS02015 at 452.672 kb on + strand, within DDA3937_RS02015 at 452.673 kb on - strand at 452.673 kb on - strand, within DDA3937_RS02015 at 452.728 kb on + strand, within DDA3937_RS02015 at 452.774 kb on - strand, within DDA3937_RS02015 at 452.779 kb on + strand, within DDA3937_RS02015 at 452.863 kb on - strand, within DDA3937_RS02015 at 452.956 kb on + strand, within DDA3937_RS02015 at 453.048 kb on - strand, within DDA3937_RS02015 at 453.059 kb on + strand, within DDA3937_RS02015 at 453.059 kb on + strand, within DDA3937_RS02015 at 453.060 kb on - strand, within DDA3937_RS02015 at 453.095 kb on - strand at 453.112 kb on + strand at 453.154 kb on + strand at 453.178 kb on + strand at 453.178 kb on + strand at 453.179 kb on - strand at 453.217 kb on + strand at 453.252 kb on - strand at 453.350 kb on - strand at 453.642 kb on + strand at 453.668 kb on - strand at 453.704 kb on - strand, within DDA3937_RS02020 at 453.744 kb on - strand, within DDA3937_RS02020 at 453.744 kb on - strand, within DDA3937_RS02020 at 453.744 kb on - strand, within DDA3937_RS02020 at 453.761 kb on - strand, within DDA3937_RS02020 at 453.820 kb on + strand, within DDA3937_RS02020 at 453.918 kb on + strand, within DDA3937_RS02020 at 453.955 kb on - strand, within DDA3937_RS02020 at 453.995 kb on + strand at 454.005 kb on - strand, within DDA3937_RS02020 at 454.077 kb on + strand, within DDA3937_RS02020 at 454.144 kb on - strand, within DDA3937_RS02020 at 454.293 kb on + strand, within DDA3937_RS02020 at 454.383 kb on + strand, within DDA3937_RS02020 at 454.384 kb on - strand, within DDA3937_RS02020 at 454.448 kb on - strand at 454.472 kb on - strand, within DDA3937_RS02020 at 454.549 kb on - strand, within DDA3937_RS02020 at 454.552 kb on + strand, within DDA3937_RS02020 at 454.558 kb on + strand, within DDA3937_RS02020 at 454.599 kb on + strand, within DDA3937_RS02020 at 454.602 kb on + strand, within DDA3937_RS02020 at 454.685 kb on + strand, within DDA3937_RS02020 at 454.685 kb on + strand, within DDA3937_RS02020 at 454.774 kb on - strand, within DDA3937_RS02020 at 454.873 kb on + strand, within DDA3937_RS02020 at 454.895 kb on - strand, within DDA3937_RS02020 at 454.900 kb on - strand, within DDA3937_RS02020 at 454.900 kb on - strand, within DDA3937_RS02020 at 455.014 kb on + strand, within DDA3937_RS02020 at 455.042 kb on + strand, within DDA3937_RS02020 at 455.056 kb on + strand, within DDA3937_RS02020 at 455.062 kb on + strand, within DDA3937_RS02020 at 455.227 kb on + strand, within DDA3937_RS02020 at 455.228 kb on - strand, within DDA3937_RS02020 at 455.228 kb on - strand, within DDA3937_RS02020 at 455.233 kb on - strand, within DDA3937_RS02020 at 455.236 kb on + strand, within DDA3937_RS02020 at 455.236 kb on + strand, within DDA3937_RS02020 at 455.246 kb on + strand, within DDA3937_RS02020 at 455.347 kb on - strand, within DDA3937_RS02020 at 455.455 kb on - strand, within DDA3937_RS02020 at 455.523 kb on + strand, within DDA3937_RS02020 at 455.982 kb on + strand at 456.067 kb on - strand at 456.139 kb on - strand, within DDA3937_RS02025 at 456.485 kb on - strand, within DDA3937_RS02025 at 456.518 kb on + strand, within DDA3937_RS02025 at 456.550 kb on + strand, within DDA3937_RS02025 at 456.602 kb on - strand, within DDA3937_RS02025 at 456.607 kb on - strand, within DDA3937_RS02025 at 456.843 kb on - strand, within DDA3937_RS02025 at 456.887 kb on - strand, within DDA3937_RS02025 at 456.912 kb on - strand, within DDA3937_RS02025 at 456.935 kb on - strand at 456.964 kb on + strand at 456.998 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 452,475 + DDA3937_RS02015 0.41 +2.0 452,482 + DDA3937_RS02015 0.42 -0.9 452,500 + DDA3937_RS02015 0.43 -0.3 452,500 + DDA3937_RS02015 0.43 -0.5 452,500 + DDA3937_RS02015 0.43 +0.1 452,500 + DDA3937_RS02015 0.43 -2.4 452,501 - DDA3937_RS02015 0.43 -0.9 452,501 - DDA3937_RS02015 0.43 +1.3 452,501 - DDA3937_RS02015 0.43 +2.8 452,501 - DDA3937_RS02015 0.43 -3.5 452,502 + DDA3937_RS02015 0.43 -1.1 452,503 - DDA3937_RS02015 0.43 -0.5 452,503 - DDA3937_RS02015 0.43 +1.0 452,503 - DDA3937_RS02015 0.43 -1.3 452,511 + DDA3937_RS02015 0.44 +0.3 452,563 + DDA3937_RS02015 0.48 -1.8 452,640 + DDA3937_RS02015 0.54 +0.2 452,640 + DDA3937_RS02015 0.54 -3.6 452,640 + DDA3937_RS02015 0.54 +0.2 452,641 - DDA3937_RS02015 0.54 +2.0 452,641 - DDA3937_RS02015 0.54 -1.5 452,672 + DDA3937_RS02015 0.57 -1.9 452,672 + DDA3937_RS02015 0.57 -1.9 452,672 + DDA3937_RS02015 0.57 -1.1 452,672 + DDA3937_RS02015 0.57 -2.6 452,672 + DDA3937_RS02015 0.57 +0.2 452,673 - +1.1 452,673 - DDA3937_RS02015 0.57 +0.0 452,728 + DDA3937_RS02015 0.61 +0.6 452,774 - DDA3937_RS02015 0.65 -2.9 452,779 + DDA3937_RS02015 0.65 -1.5 452,863 - DDA3937_RS02015 0.72 +0.7 452,956 + DDA3937_RS02015 0.79 -1.5 453,048 - DDA3937_RS02015 0.86 -1.8 453,059 + DDA3937_RS02015 0.87 -2.2 453,059 + DDA3937_RS02015 0.87 -2.5 453,060 - DDA3937_RS02015 0.87 -4.2 453,095 - +0.8 453,112 + +0.7 453,154 + +0.1 453,178 + -2.5 453,178 + -2.2 453,179 - +0.7 453,217 + -3.8 453,252 - -0.3 453,350 - -0.8 453,642 + -2.3 453,668 - +0.4 453,704 - DDA3937_RS02020 0.10 +1.0 453,744 - DDA3937_RS02020 0.12 -0.3 453,744 - DDA3937_RS02020 0.12 -1.5 453,744 - DDA3937_RS02020 0.12 -1.7 453,761 - DDA3937_RS02020 0.12 +0.1 453,820 + DDA3937_RS02020 0.15 -1.7 453,918 + DDA3937_RS02020 0.18 -1.7 453,955 - DDA3937_RS02020 0.20 +0.8 453,995 + +1.7 454,005 - DDA3937_RS02020 0.22 -1.1 454,077 + DDA3937_RS02020 0.25 +1.0 454,144 - DDA3937_RS02020 0.27 -3.0 454,293 + DDA3937_RS02020 0.33 -0.8 454,383 + DDA3937_RS02020 0.37 -2.2 454,384 - DDA3937_RS02020 0.37 -1.7 454,448 - -0.3 454,472 - DDA3937_RS02020 0.40 +0.3 454,549 - DDA3937_RS02020 0.43 -1.2 454,552 + DDA3937_RS02020 0.43 +1.1 454,558 + DDA3937_RS02020 0.43 -1.8 454,599 + DDA3937_RS02020 0.45 -1.3 454,602 + DDA3937_RS02020 0.45 -3.3 454,685 + DDA3937_RS02020 0.48 -0.4 454,685 + DDA3937_RS02020 0.48 -2.9 454,774 - DDA3937_RS02020 0.52 -1.5 454,873 + DDA3937_RS02020 0.56 -2.2 454,895 - DDA3937_RS02020 0.57 -1.7 454,900 - DDA3937_RS02020 0.57 -0.3 454,900 - DDA3937_RS02020 0.57 -2.8 455,014 + DDA3937_RS02020 0.61 -0.7 455,042 + DDA3937_RS02020 0.62 -1.3 455,056 + DDA3937_RS02020 0.63 -1.3 455,062 + DDA3937_RS02020 0.63 -2.2 455,227 + DDA3937_RS02020 0.70 -1.7 455,228 - DDA3937_RS02020 0.70 -0.5 455,228 - DDA3937_RS02020 0.70 -1.2 455,233 - DDA3937_RS02020 0.70 +0.4 455,236 + DDA3937_RS02020 0.70 -0.3 455,236 + DDA3937_RS02020 0.70 -0.0 455,246 + DDA3937_RS02020 0.70 -2.1 455,347 - DDA3937_RS02020 0.74 -2.5 455,455 - DDA3937_RS02020 0.78 -2.3 455,523 + DDA3937_RS02020 0.81 -3.5 455,982 + -2.8 456,067 - -1.1 456,139 - DDA3937_RS02025 0.15 -0.6 456,485 - DDA3937_RS02025 0.48 -2.3 456,518 + DDA3937_RS02025 0.51 -2.7 456,550 + DDA3937_RS02025 0.54 -1.2 456,602 - DDA3937_RS02025 0.59 -1.9 456,607 - DDA3937_RS02025 0.60 +1.8 456,843 - DDA3937_RS02025 0.82 +1.7 456,887 - DDA3937_RS02025 0.86 -2.4 456,912 - DDA3937_RS02025 0.89 -2.7 456,935 - -2.1 456,964 + +0.3 456,998 - -2.4
Or see this region's nucleotide sequence